LOC111193460


Basic Information

Item Value
gene id LOC111193460
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 25484843 ~ 25519366 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674362.1
GGTTTTAGAGATGCTGTTCAGTGATCCACACCCACAGTGATTTGATCTCACACTCAGTAATGCTGTAAACAGTTCATCACTGACGTCCAGGAGGTGAAGATATCGTTTCTTTAATGTCAGACACAGTGTCCTGAAATATGAAGGGATGAAGGTTCTCTGGGTGATGCTACTGACTTTCTCTCGCTTAATGGAGACCATGTCAGTACAATTTAAAGTGGTGGGTCCAGCTGCTCCTCTTGTTGCTGTAGCTGGTGAAGATCTGGTTCTTCCCTGTTCTCTCCAACCCAGCTTCAGTTCTGAGGGTATGAGAGTGGAGTGGTACAGACTGCATCGGACAGACACGCTAGTTCACCTGCATGAAGAATAtaaagacagaaatagagatCAGATGGAGTCTTACAGAGGGagaacagctctgtttaaagaaGAACTGAAGAAAGGAAACGCCTCACTGAAACTCTCAGCTCTCCAACCTTCTGATGATGGAGCTTACAAGTGTTTAATAGAGTATGGATTGCAGTATGATGATATAACTCTTTATGTTGAAGTTAAAGGAAAAGGTTTTCATGGTTGGAAGATTACCATCATCTGCATTTCTGTTTTTGCTGTTATTTTAACAGCTTTTACAGCTTACATCTGGAGAGATAAATACTCTGAAAAGCAGCTCTCTCCTACACAGTGCTCAGTTATAACCTACATGCGTCTCCACACCGAGAATCCCCGCAAAGAGCTGGACCTGAGCAAATTCAACACATCAGAGGAGGGACACAGGAGACTCATCCCAGCTGTATCAAACAGCAGGAAGGCTCAATTAGCTGGCTGTAATCTCACTGAGCAGTCTATTGAAACATTAAGTACAGCTCTACAGTCAGAAAACTCcaccctgaaagagctggacctcagtaacaacaACTTGCAGGGATCAAGGATGGAGAAACTCTCTGCTGGACTAAAGCGTTcaaactgtaaactggagataCTCAGACTTGCTATGTGTAAACTCAGTAAACAGTCCTGTACGTCTCTTCAGTCAGTTTTACAATCAGAAAACTctctgaaagagctggacctcagtgaCAACAACCTGGAGGATTCAGGAATAGAGAAACTCTCTGATGGACTCAAGAATACACACTGTAAACTAGAGCGACTCAGGTCAGAATtctgttatttcttttttatatggtga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674362.1 True 1189 mRNA 0.43 7 25484843 25519366

Neighbor

gene id symbol gene type direction distance location
LOC103025458 NA coding upstream 35564 25423712 ~ 25449279 (+)
LOC111193564 NA coding upstream 62585 25419540 ~ 25422258 (+)
LOC103023109 NA coding upstream 98543 25382872 ~ 25386300 (+)
LOC103022503 NA coding upstream 110011 25372806 ~ 25374832 (+)
slitrk6 slitrk6,LOC107674010,LOC107730399,LOC107558904,LOC107737039,LOC107574216,LOC107698122 coding upstream 382270 25076936 ~ 25102573 (+)
ube2f ube2f,LOC107725407,LOC107674019,LOC107556276,LOC107707607,LOC107566887 coding downstream 220861 25740227 ~ 25759643 (+)
LOC103038099 erbb4,LOC108441681,LOC108440448,LOC101079286 coding downstream 244481 25763847 ~ 26023673 (+)
LOC111193484 NA coding downstream 556332 26075698 ~ 26078799 (+)
LOC103039357 NA coding downstream 669599 26188965 ~ 26193144 (+)
LOC103039973 NA coding downstream 725873 26245239 ~ 26248347 (+)
G106255 NA non-coding upstream 81931 25360085 ~ 25402912 (+)
LOC103043670 NA non-coding upstream 83038 25400917 ~ 25401805 (+)
G106250 NA non-coding upstream 271374 25213203 ~ 25213469 (+)
G106248 NA non-coding upstream 272767 25211579 ~ 25212076 (+)
G106220 NA non-coding upstream 575814 24908744 ~ 24909029 (+)
G106281 NA non-coding downstream 4211 25523577 ~ 25526560 (+)
G106282 NA non-coding downstream 7503 25526869 ~ 25527333 (+)
G106284 NA non-coding downstream 23241 25542607 ~ 25546810 (+)
G106286 NA non-coding downstream 33225 25552591 ~ 25554715 (+)
G106275 NA non-coding downstream 39215 25558581 ~ 25560028 (+)
LOC111193563 NA other upstream 115404 25361744 ~ 25369439 (+)
G106146 NA other upstream 1071745 24411208 ~ 24413098 (+)
G106036 NA other upstream 1495251 23987207 ~ 23989592 (+)
G106017 si:ch73-12o23.1,LOC108439175,LOC108258846,LOC107722961,LOC107590719 other upstream 1561072 23915635 ~ 23923771 (+)
LOC103038624 zgc:77849,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708,LOC107564565 other upstream 2664747 22810079 ~ 22820096 (+)
LOC103037236 NA other downstream 635051 26154417 ~ 26171801 (+)
G106661 lancl1 other downstream 2495150 28014516 ~ 28022047 (+)
G106673 NA other downstream 2546986 28066352 ~ 28066983 (+)
LOC103027743 NA other downstream 3183701 28703067 ~ 28724026 (+)
LOC111193573 NA other downstream 3629699 29149065 ~ 29159680 (+)

Expression


Co-expression Network