XLOC_000739 (zgc:172106)


Basic Information

Item Value
gene id XLOC_000739
gene name zgc:172106
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 55293424 ~ 55299173 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001232
aggcatctactttcagagagtcacagatcacagctgcgtcaattaataaggcagaaaataggcgataggctgctaagccttttatgggccgatcagatcataagacgatgatcagcccggcccaaaaagtacgtcggcccaccgggaaagtgcccggtccgccagatggccagtccgcccctgttacCAAGTATGAATATAGATTGCAATAGTAAAAGTTGATCTATGATTAATtgttaaatgctgtacatgtattgtttattattagttcatgttactgcatattaactaacataaactaataaaacattgtaaagtgtgaccgctttaaaataaaagaaaaagaggaagcaGGAAGTGAAACCTGTTGAAGTTTTCCGTCCATCATGATCACCAGTTCTCTGTTCAGTGCTTCAATACCGCAGTAAAGCAAGGATGTTTTGTCTTTCATTTATAATTTCTCTGCTCATGATTCCCGgcaTTTGCAGCCAGAAATGGGAAGTTCGGTACTCAAAAACTGCAATATGTGTTTTAAAGGGTTCAACAATGCGTTTATCAGGCAGTTATAAACACCCAGATGGTCTCACTGTGACAGAGATATTTTGGACTGTAAACATAGAAAAAGGAAAAGCCATCAATCTGCTGAATAATCCAAATTACACAGGCAGAGTTGATTACTttcagattgaggaaatgttttTTCTCAAGCTCAGTAATGTGAGACATGAGGATGAAGGAATGTACTGCATCAGAATTGAGACAAAGGTAGAAAAACAGCAATTTCTGGGTTTTCCTGGGATTGAGCTCACAGTGACAGATCTCAGAGTGGAGACTCCTGCAGAGGTGGTTGAAGGAGATTCTCCAGTCTTAACTTGTAAAAGTTCCTGTAATCTCGGCAGCACAATCTTCATCTGGTATAAGAATGGCAAGTCTTTCTCAGAATCGGTGCGTCAGAATCAGCTGATTCTGCAGTCGGTCAGCAGTGAAGATTCTGGAAACTACAGCTGTGCAGTGAGAGATCTGAAAGATCTGCCGTCTCCTGCTCTCACGCTCAACATCAGATATCCTCCAAAGAGCGTCTCAGTGTCCGTCAGTGGATCTGCTGTAATAGAgtctggagattcagtgactctgagctgcagcagcgactcaaaccctcctgctgTGAACTTCACCTGGTTTAAGGAGAATCAAAGCTCAGCTGTTGGATCAGGACAGAGTTTCAGCATCTCCAGCTTTAACTCCAGTCACAGTGGCCAATACTACTGCGAGGCTGAGAATAAATATGGCTCTCAGAGATCAGAGTCTGTTTCAGTCACTGTTAAAGAAAGCGGCTCATTTTGGATCTCGATCACAGCAGGAATCGCTGcatctgcttttgtgtttgtttttattgtcatCATAAGGAAGCGAGTGACTCGGTCAGAAGAGCAAAACCACAGAggatcacaacaacaacaacaacaaaagcacagTGCGGTGGAGCCTCCTGAAGATCCCTACATGGCCCTTGACCCCAATTCCAGATGCTCTGAGTACGACACACTAGACAATTTGAAGAGATCCTGTGAAAACACAGACGACCGTGAAGATGATGGTTCCACATATTATAATATTGATCAATGATTATTCAAATAGTCACATCTTGACTTATTTCATGATTTACTTTACTTGTGAGATTTCCTTGATGCtgttttaagtcttttttttttaattaagtaggGTATCTATAATTTACCTGTTCAGGTAAACTAAAGGCAGAATAGAGTAGTCTGgctctctcaaggttttttttcttcactcccatcaggtgaagtttttttccctctccgctgtcgccactgcctcgcatggttcaggattggtagagctacgcatcgatgaattggctcttcagtgtttgaactctcagtaatgattaaatcacactgaactgagctgaactgaacttaaacactaaaacctgaaccacactgttccagttactatgaccatttatgtgaagctgctttgacacaatctacattgtaaaagcgctatacaaataaagctgaattgaattgaactg
>TCONS_00001233
GATTGCAATAGTAAAAGTTGATCTATGATTAATtgttaaatgctgtacatgtattgtttattattagttcatgttactgcatattaactaacataaactaataaaacattgtaaagtgtgaccgctttaaaataaaagaaaaagaggaagcaGGAAGTGAAACCTGTTGAAGTTTTCCGTCCATCATGATCACCAGTTCTCTGTTCAGTGCTTCAATACCGCAGTAAAGCAAGgcaTTTGCAGCCAGAAATGGGAAGTTCGGTACTCAAAAACTGCAATATGTGTTTTAAAGGGTTCAACAATGCGTTTATCAGGCAGTTATAAACACCCAGATGGTCTCACTGTGACAGAGATATTTTGGACTGTAAACATAGAAAAAGGAAAAGCCATCAATCTGCTGAATAATCCAAATTACACAGGCAGAGTTGATTACTttcagattgaggaaatgttttTTCTCAAGCTCAGTAATGTGAG
>TCONS_00001234
AGTGCTTCAATACCGCAGTAAAGCAAGGATGTTTTGTCTTTCATTTATAATTTCTCTGCTCATGATTCCCGGTGAGTCTAAATGCTGTGCAGAACTTACACATTAAGTACTGTTAAATATTATGATAGATCATCAAGTATAGTTCAAATAGATCGATTTTGTCTTGTTGGACACTTCCTGTAATGTGGGGTGTTGCTGTCATTTTGGTCTTTTTGTTAAGTTTTTGCAATCCACTAGGTGGCATTTTAAATAGTATGAGTGAAGAGAGcatgatattgtgatattgtattatttatgtatttacc
>TCONS_00001235
GTTTTGTCTTTCATTTATAATTTCTCTGCTCATGATTCCCGgcaTTTGCAGCCAGAAATGGGAAGTTCGGTACTCAAAAACTGCAATATGTGTTTTAAAGGGTTCAACAATGCGTTTATCAGGCAGTTATAAACACCCAGATGGTCTCACTGTGACAGAGATATTTTGGACTGTAAACATAGAAAAAGGAAAAGCCATCAATCTGCTGAATAATCCAAATTACACAGGCAGAGTTGATTACTttcagattgaggaaatgttttTTCTCAAGCTCAGTAATGTGAGACATGAGGATGAAGGAATGTACTGCATCAGAATTGAGACAAAGGTAGAAAAACAGCAATTTCTGGGTTTTCCTGGGATTGAGCTCACAGTGACAGATCTCAGAGTGGAGACTCCTGCAGAGGTGGTTGAAGGAGATTCTCCAGTCTTAACTTGTAAAAGTTCCTGTAATCTCGGCAGCACAATCTTCATCTGGTATAAGAATGGCAAGTCTTTCTCAGAATCGGTGCGTCAGAATCAGCTGATTCTGCAGTCGGTCAGCAGTGAAGATTCTGGAAACTACAGCTGTGCAGTGAGAGATCTGAAAGATCTGCCGTCTCCTGCTCTCACGCTCAACATCAGATATCCTCCAAAGAGCGTCTCAGTGTCCGTCAGTGGATCTGCTGTAATAGAgtctggagattcagtgactctgagctgcagcagcgactcaaaccctcctgctgTGAACTTCACCTGGTTTAAGGAGAATCAAAGCTCAGCTGTTGGATCAGGACAGAGTTTCAGCATCTCCAGCTTTAACTCCAGTCACAGTGGCCAATACTACTGCGAGGCTGAGAATAAATATGGCTCTCAGAGATCAGAGTCTGTTTCAGTCACTGTTAAAGAAAGCGGCTCATTTTGGATCTCGATCACAGCAGGAATCGCTGcatctgcttttgtgtttgtttttattgtcatCATAAGGAAGCGAGTGACTCGGTCAGAAGAGCAAAACCACAGAggatcacaacaacaacaacaacaaaagcacagTGCGGTGGAGCCTCCTGAAGATCCCTACATGGCCCTTGACCCCAATTCCAGATGCTCTGAGTACGACACACTAGACAATTTGAAGAGATCCTGTGAAAACACAGACGACCGTGAAGATGATGGTTCCACATATTATAATATTGATCAATGATTATTCAAATAGTCACATCTTGACTTATTTCATGATTTACTTTACTTGTGAGATTTCCTTGATGCtgttttaagtcttttttttttaattaagtaggGTATCTATAATTTACCTGTTCAGGTAAACTAAAGGCAGAATAGAGTAGTCTGgctctctcaaggttttttttcttcactcccatcaggtgaagtttttttccctctccgctgtcgccactgcctcgcatggttcaggattggtagagctacgcatcgatgaattggctcttcagtgtttgaactctcagtaatgattaaatcacactgaactgagctgaactgaacttaaacactaaaacctgaaccacactgttccagttactatgaccatttatgtgaagctgctttgacacaatctacattgtaaaagcgctatacaaataaagctgaattgaattg

Function

symbol description
zgc:172106 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080204-42 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000017984

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001232 False 2068 mRNA 0.42 9 55293424 55299173
TCONS_00001233 False 477 processed_transcript 0.35 2 55293625 55297251
TCONS_00001234 False 305 lncRNA 0.34 2 55293831 55294283
TCONS_00001235 True 1626 mRNA 0.42 8 55294009 55299168

Neighbor

gene id symbol gene type direction distance location
XLOC_000738 si:ch211-286b5.6 coding upstream 6164 55279124 ~ 55287260 (+)
XLOC_000737 BX284640.1 coding upstream 17611 55264712 ~ 55275813 (+)
XLOC_000736 si:ch211-286b5.2 coding upstream 46171 55239160 ~ 55247253 (+)
XLOC_000735 NA coding upstream 102162 55184764 ~ 55191262 (+)
XLOC_000734 mb coding upstream 148339 55137943 ~ 55145085 (+)
XLOC_000740 si:ch211-286b5.8 coding downstream 5201 55304374 ~ 55310703 (+)
XLOC_000741 NA coding downstream 15301 55314474 ~ 55579436 (+)
XLOC_000742 NA coding downstream 27393 55326566 ~ 55343851 (+)
XLOC_000743 si:ch211-286b5.9 coding downstream 49364 55348537 ~ 55353978 (+)
XLOC_000744 NA coding downstream 70344 55369517 ~ 55369839 (+)
XLOC_000733 CU467849.1 non-coding upstream 164845 55128465 ~ 55128579 (+)
XLOC_000729 NA non-coding upstream 308127 54959492 ~ 54985297 (+)
XLOC_000721 NA non-coding upstream 592669 54698173 ~ 54700755 (+)
XLOC_000715 NA non-coding upstream 679945 54611838 ~ 54613479 (+)
XLOC_000745 NA non-coding downstream 70965 55370138 ~ 55477135 (+)
XLOC_000746 NA non-coding downstream 86019 55385192 ~ 55385451 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01059337_00000128_00000564 NA coding CI01059337 null 34 ~ 564 (-)