LOC111193470


Basic Information

Item Value
gene id LOC111193470
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 29656537 ~ 29658422 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674379.1
ATGTCCTCACCCCACCACTGCCTCAAACTGAACCACCACTGCCTCAAACTGAACCACCACTGTCTCAAACTGAACCACCACTGTCCCAAACTAAGCCACCACTGCCTCAAACTAAACTACCACTTCCCCaaactgagccaccactgccccaaACTAAGCCATTACTGCCCCAAACTGAGCCACTACTGCCCCAAACTAAGCCACCACTGCCTCAAACTGAACCACCACTGCCCCaaactgagccaccactgccccaaactgagccaccactgcctcaAACTGAGCCACCACTGTCCCAAACTAAGCCACCACTGCCTCAAACTGAACCACCACTGCCTCAAACTGAACCACCACTGTCCCAAACTAAGCCACCACTGCCTCAAACTAAACCACCACTGCCTCAAACTGAACCACCACTGTCTCAAACTGAGCCACCACTGTCCCAAACTAAGCCACCACTGCCTCAAACTAAGCAATTACTGCCCCAAACTGAGGCACCACTGCCCCAAACTAAGTCACCACTGCCCCAAACTAAGCCACCACTGTCTGaaactgagccaccactgcctcaAACTGAGCCACCACTGTCCCAAACTAAGCCACCACTGCCTCAAACTGAACCACCACTGCCTCAAACTGAACCACCACTGTCCCAAACTAAGCCACCACTGCCTCAAACTGAACCACCACTGCCTCAAACTGAACCACCACTGTCTCAAACTGAGCCACCACTGTCCCAAACTAAGCCACCACTGCCTCAAACTAAGCAATTACTGCCCCAAACTGAGGCACCACTGCCCCAAACTAAGTCACCACTGCCCCAAACTAAGCCACCACTGTCCCAAACTAAGCCACCACTGCCCCAAACTAAGCCATTACTGCCCCAAACTAAGCCACCACTGCCCCAAACTAAGCCACCACTGCCCCAAACTAAGCCACCACTGCCTCAAACTAAGCCACCACTGTCCCGAACTAAACCACCACTGCAATTACTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674379.1 True 996 mRNA 0.53 2 29656537 29658422

Neighbor

gene id symbol gene type direction distance location
LOC103025432 NA coding upstream 68415 29563196 ~ 29588122 (+)
donson LOC107555241 coding upstream 98494 29538337 ~ 29558043 (+)
LOC103025657 runx1,LOC108429862,LOC107571884 coding upstream 136703 29417222 ~ 29519834 (+)
LOC103024513 LOC107555266,LOC106574727,LOC106575573,LOC108429863,LOC107568777,LOC107709315,LOC107718016,LOC105889574,LOC100333907 coding upstream 414940 29208551 ~ 29241597 (+)
LOC111193469 NA coding upstream 528896 29125873 ~ 29127641 (+)
ncam2 ncam2,LOC107721821,LOC107698913,LOC107751079 coding downstream 185678 29844100 ~ 30451601 (+)
LOC111193471 NA coding downstream 881839 30540261 ~ 30547361 (+)
LOC111193577 LOC108429857,LOC108258902 coding downstream 1003577 30661999 ~ 30668744 (+)
gart gart coding downstream 1013730 30672152 ~ 30711252 (+)
adamts5 adamts5,LOC107751075,LOC107698897 coding downstream 1602858 31261280 ~ 31300421 (+)
G107074 NA non-coding upstream 303 29655911 ~ 29656234 (+)
G107064 NA non-coding upstream 35025 29615278 ~ 29621512 (+)
G107057 NA non-coding upstream 55953 29597258 ~ 29600584 (+)
G107056 NA non-coding upstream 59523 29595038 ~ 29597014 (+)
G107044 NA non-coding upstream 81190 29525655 ~ 29575347 (+)
G107075 NA non-coding downstream 15674 29674096 ~ 29674334 (+)
G107094 NA non-coding downstream 25664 29684086 ~ 29684364 (+)
G107096 NA non-coding downstream 38280 29696702 ~ 29698661 (+)
G107104 NA non-coding downstream 59750 29718172 ~ 29718407 (+)
G107106 NA non-coding downstream 62204 29720626 ~ 29720867 (+)
LOC111193573 NA other upstream 496857 29149065 ~ 29159680 (+)
LOC103027743 NA other upstream 932511 28703067 ~ 28724026 (+)
G106673 NA other upstream 1589554 28066352 ~ 28066983 (+)
G106661 lancl1 other upstream 1634490 28014516 ~ 28022047 (+)
LOC103037236 NA other upstream 3484736 26154417 ~ 26171801 (+)
G107117 NA other downstream 121904 29780326 ~ 29780927 (+)

Expression


Co-expression Network