LOC111193482


Basic Information

Item Value
gene id LOC111193482
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 18336145 ~ 18337262 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674388.1
ACATCATCACCTTTAGAACACTTGTACGAACATTCTAAAGGTGATGATGTCACCAGCCAGTCGATTGGCTGTGTGATTCCGAAGCTACAGCATTCCGATGGGTATAAATAGCTGTGTGCTGGAGTTTTTGGTCTGTTGGGTGTTCGGTGTTGGAGAGAGCAGTTCGAAAGTATAGTGCTACCCATAGCTACAGACAACTAGACATGGTGCAGATGCTGAAAGCGTTAATCGTTCCAGGTGTGCTGGCCGTCGCcggctgctgctggtggtggtatAGCTCCCGGAAGAAAACTCCAGGTACCAGCCAGGACAGTGAGGAGAAGGAGGATGAGCTTTCTTCCTCTAGTGGTGAAGAGCAGTGTGCTCAGTCTGAGACTAGAGCACCTCTCTCAAGCCCAGAGGGAGCTCCCCCTTCAGGACAGTGTGGAAGGCAGCCAGCTAGCAGAGATCAGTGAGCAGGAAATGCAGCTTGAAGAGCCAATCATCATCATAGATGATCCTCAGTCTGAAGACACTCCAGTGTCTGTTATAGAGCTTCCAGAGCTCAGTGTGGTTGAAGACCTGTCTTCTTCTTCTGAAGATGGACAGTGTGCTCAGTCAAGCCCAGAGGAGCTCCCCCTTCAGGACAGTGTGGAAGACAGCCAGCCAGATGGACAGTGTGCTCTATCAAGCCCAGAGGAGCTCCCCCTTCAGGACAGTGTGGAGGACAGCCAGCCAGCCTGGAGCAGTGAGGGGAAAAGGCTGCTTGAGGAGCCAATCATGGACAAAGAGGATCCTCCTACTAAAGGCGTACCAGCTTCCTTTCTGGGACGAAAGACAAAACCACGGGTCCTTTCCACCTCCGTGCCTTTGAAGCCCTTTTTCATAAGGGATAAAAAGTATGAGAACACAAGGGAGAGCCTTTCCCAGGTGGCATGGGACTCAGTAATGAATGATTGGTATTAACTTaccaaataaaagcaaaaatatatatatatca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674388.1 True 979 mRNA 0.50 2 18336145 18337262

Neighbor

gene id symbol gene type direction distance location
LOC103032036 LOC108258971,LOC108434686,LOC107588835,LOC107667659,LOC107742634,LOC107739811,LOC107700106,LOC107552381 coding upstream 121273 18192698 ~ 18214872 (+)
LOC103032361 gpm6ba,LOC108434682,LOC108259029,LOC107552377,LOC107588840,LOC107654257,LOC107667658 coding upstream 253683 18009302 ~ 18082462 (+)
gemin8 gemin8 coding upstream 329634 17998315 ~ 18006511 (+)
LOC103027494 NA coding upstream 373427 17950021 ~ 17962718 (+)
hsf2bp LOC106595116 coding upstream 391420 17934859 ~ 17944725 (+)
arhgap6 arhgap6 coding downstream 67244 18404506 ~ 18566714 (+)
mid1 mid1,LOC103030906,LOC106575281,LOC106574413 coding downstream 305446 18642708 ~ 18742642 (+)
LOC103031642 ednrb,LOC108434743,LOC105911940,LOC106569465,LOC107658690,LOC107566659 coding downstream 452261 18789523 ~ 18808162 (+)
LOC103031957 LOC103031957 coding downstream 490017 18827279 ~ 18858363 (+)
sugt1 sugt1,LOC104941757 coding downstream 523467 18860729 ~ 18895531 (+)
G104483 NA non-coding upstream 56337 18257597 ~ 18279808 (+)
G104482 NA non-coding upstream 89806 18245635 ~ 18246339 (+)
G104478 NA non-coding upstream 120055 18215606 ~ 18216090 (+)
G104474 NA non-coding upstream 120674 18215096 ~ 18215471 (+)
G104446 NA non-coding upstream 144935 18188710 ~ 18191210 (+)
G104499 NA non-coding downstream 24770 18362032 ~ 18448106 (+)
G104502 msl3,LOC107724056,LOC107742416 non-coding downstream 47613 18384875 ~ 18394066 (+)
G104534 NA non-coding downstream 110527 18447789 ~ 18510642 (+)
G104504 NA non-coding downstream 232189 18569451 ~ 18573534 (+)
G104588 NA non-coding downstream 310953 18648215 ~ 18649075 (+)
LOC111193547 NA other upstream 917007 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 1197172 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 1441553 16888386 ~ 16894592 (+)
LOC103037450 NA other upstream 1761712 16555694 ~ 16574433 (+)
col17a1 col17a1,LOC108434660,LOC107684270,LOC107583183 other upstream 1828358 16463938 ~ 16507787 (+)
G104656 pcdh8 other downstream 581798 18919060 ~ 18923203 (+)
nfkbiz nfkbiz other downstream 1396964 19734226 ~ 19744924 (+)
G105276 NA other downstream 2652011 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 2681776 21019038 ~ 21028990 (+)
G105357 NA other downstream 2989930 21327192 ~ 21369204 (+)

Expression


Co-expression Network