LOC111193484


Basic Information

Item Value
gene id LOC111193484
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 26075698 ~ 26078799 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674393.1
TTCACTTAGTTTAAGTACAGATTCTGAGCTACAGGTTTCAGATTTAAAATGACTGAGAGTAAATTCACCTGTATGGCGGATCTCATGGAGCATCTCCACGCTTTATCTTTAGCTCATTTAGCCTCGTCAGCATCCCGCGACTTCCCCAGCCAGCAGGACCTCGACccTATCCAAAGAAGAGCGAATGGCCAACCTATCTGTTCATTGAGGACCTTCATATATGGCTGTGGGGACACTGGTGATACCGTTGAGGAACGAACCATAAAATACTGGTACTTGTTTCACACCGGGAGCAGGGACTCATGGGAATCTTCCTCTGAAAGCGAGGAGCACAGAGCAGCGCCTTTCCCCTTCGAGGGATTTTGCTCCGCTTCCTCTTTAAAAAATGAGGAGGACGTTATAGAGCAGCCTGAACCTGAGGAGTCCAagatgaaggaggaggaggaggaggaggaggaggaggagctatCTGGCTGCTTTACAATCAAGACTGATATCGTGGCAGTACTTGTGGAAGCTTTCCGAGCATTTAGACTGAGGATGAGGAAAGCTTTccgaagaggaagaggaagagtcgAGCCGGTGCAGAGCCCTTCCTTCCAGGAGGATCCGACTTCTGCGTCTGCTCAAGAAGCGCCTCTCAGGACTCCTGATGCTGAGGCAGAAGCTGAGGAGGAAGCAGCCGAGGAGGAAGCAGCCGAGGAGGAAGCAGCTGAGGAGGAAGCGTCTTCAGAGACTCGGAGAACCAGGAAGCTGCGCTTCCCCAAATTTAAGaaaTACAGGACGTCAAGAACAAGAACCAAGAAACCAAGAAGCTGAATCTTCAGCTCCCCTTCAGAGTAAAGAAGTTTCTAATTTCCCTCTCAGTAAAAAGTCCAGTCCTCCTCTGGCTCTGATTGGTCCACAGCAGCAGGTGCTGTATGAGTGTTTGTTGCAGTTCGGTGTCGACCTAAGGAGGATGGGTCTCCCTTTTGAGCTCTGGGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674393.1 True 985 mRNA 0.51 5 26075698 26078799

Neighbor

gene id symbol gene type direction distance location
LOC103038099 erbb4,LOC108441681,LOC108440448,LOC101079286 coding upstream 52025 25763847 ~ 26023673 (+)
ube2f ube2f,LOC107725407,LOC107674019,LOC107556276,LOC107707607,LOC107566887 coding upstream 316055 25740227 ~ 25759643 (+)
LOC111193460 NA coding upstream 556332 25484843 ~ 25519366 (+)
LOC103025458 NA coding upstream 626419 25423712 ~ 25449279 (+)
LOC111193564 NA coding upstream 653440 25419540 ~ 25422258 (+)
LOC103039357 NA coding downstream 110166 26188965 ~ 26193144 (+)
LOC103039973 NA coding downstream 166440 26245239 ~ 26248347 (+)
LOC111193566 NA coding downstream 171374 26250173 ~ 26254877 (+)
slitrk1 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 coding downstream 432322 26511121 ~ 26515238 (+)
LOC111193487 NA coding downstream 560168 26638967 ~ 26643210 (+)
G106380 NA non-coding upstream 45016 26026244 ~ 26030682 (+)
G106391 NA non-coding upstream 115249 25954937 ~ 25960449 (+)
G106370 NA non-coding upstream 365242 25710216 ~ 25710456 (+)
G106289 NA non-coding upstream 509272 25563594 ~ 25566426 (+)
G106275 NA non-coding upstream 515670 25558581 ~ 25560028 (+)
G106446 NA non-coding downstream 144337 26223136 ~ 26228689 (+)
G106466 NA non-coding downstream 206093 26284892 ~ 26285416 (+)
G106476 NA non-coding downstream 230930 26309729 ~ 26309982 (+)
G106486 NA non-coding downstream 373409 26452208 ~ 26452448 (+)
G106541 NA non-coding downstream 690815 26769614 ~ 26769877 (+)
LOC111193565 NA other upstream 504877 25458815 ~ 25570821 (+)
LOC111193563 NA other upstream 706259 25361744 ~ 25369439 (+)
G106146 NA other upstream 1662600 24411208 ~ 24413098 (+)
G106036 NA other upstream 2086106 23987207 ~ 23989592 (+)
G106017 si:ch73-12o23.1,LOC108439175,LOC108258846,LOC107722961,LOC107590719 other upstream 2151927 23915635 ~ 23923771 (+)
LOC103037236 NA other downstream 75618 26154417 ~ 26171801 (+)
G106661 lancl1 other downstream 1935717 28014516 ~ 28022047 (+)
G106673 NA other downstream 1987553 28066352 ~ 28066983 (+)
LOC103027743 NA other downstream 2624268 28703067 ~ 28724026 (+)
LOC111193573 NA other downstream 3070266 29149065 ~ 29159680 (+)

Expression


Co-expression Network