LOC107197101


Basic Information

Item Value
gene id LOC107197101
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 177680 ~ 182649 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674406.1
TTACTATGTTTATCTTTCAGAGCTCCGGTTAATTGGACAATTTCTACACTGAACAAGCTGGGAGGTCTTCCTTTATACTTCACCTCCAACATCTGGGTTTACTTCACCTTGAAAGATAAGGCTCAGTTCTTGAAGACATTCTTGCCACCACTGAGAGAGAATCTAAAATTCAACAAAGACAAGATCATCTCCTTGATGAATGAAGCCCAGAAAATGTCCAAGACAAAAACCAGACTGTCCCACAGAATCAAGCGGGACACAGCATGCACAGCAGGAGATATCACTCAAGTCCAAGCGAACGATAACTCTTTTCCGTTTGGCTACGATGTAACACAGTTTAACATCTGTCTGAGTGTTCAGACACTGAAGGACAATCTGGCCGCCATTTCACAGAAAGTTGTTGGGAGTGAATACCAGCGTGTCATCCTGGATAAACTCAACCAGGCCTACCCATCAGGCATCAGCGATGAGATTCTGCAGGTCCTCGGCCCCGCCTCCCGCGCTGCCACGGTAACCGATATCAGCAAGTGGAACATCACTAAGGTGGACACACTGTCAGCCCTGATGAAATCCAGTGATGGAAACTGGACCTCAGATCAGGTGAAAGCTGTTGTCAGTAGGTACCTGGCGGTCGGTGGGAACTCTCTGGGTCGCTCTGAGTTGAACGCTCTCGGAGGAGTGAACCTCTGCGCTCTGGACATCAGTACCCTCAATACAATCACCTCCACCAACTTACAGAGTGCAGGTTCGCTGTCAGTATCTACCTGCAGTTTGGATCAGAAGCAGGTTCTGTTCAGCGTCGCTCAGACGGCCTTCAGCGACAAAACCCTGAACACCCCCCGAGCCTCCACCCCCGTCTCCACCAACGCCTACCAGCTCATCCAGACCTACCTCGGTGAGACCCGCTGCACCGCTCTATAACAGCTCACAACACTCTATAACAGTCTGTAACACTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674406.1 True 956 mRNA 0.50 6 177680 182649

Neighbor

gene id symbol gene type direction distance location
LOC103033028 NA coding upstream 7976 162996 ~ 169704 (+)
LOC103027555 NA coding upstream 52531 98126 ~ 125149 (+)
LOC111193489 NA coding upstream 159836 6084 ~ 17844 (+)
LOC111193578 NA coding downstream 4498 187147 ~ 188599 (+)
LOC103028503 NA coding downstream 33364 216013 ~ 223221 (+)
rexo5 NA coding downstream 94004 276653 ~ 293379 (+)
gtf3c1 NA coding downstream 129017 311666 ~ 341737 (+)
LOC107197104 NA coding downstream 272223 454872 ~ 459776 (+)
G99345 NA non-coding upstream 83498 92045 ~ 94182 (+)
G99344 NA non-coding upstream 89113 86699 ~ 88567 (+)
G99340 NA non-coding upstream 100658 66706 ~ 77022 (+)
G99356 NA non-coding downstream 15017 197666 ~ 200573 (+)
G99367 NA non-coding downstream 50278 232927 ~ 234373 (+)
G99368 NA non-coding downstream 52208 234857 ~ 235793 (+)
G99373 NA non-coding downstream 65291 247940 ~ 249482 (+)
G99352 thumpd1 non-coding downstream 81727 264376 ~ 265137 (+)
LOC103031902 NA other upstream 140616 20991 ~ 37064 (+)
G99561 NA other downstream 292011 474660 ~ 482219 (+)
LOC103036139 NA other downstream 304825 487474 ~ 496376 (+)
LOC111193579 NA other downstream 351380 534029 ~ 540471 (+)
LOC111193492 NA other downstream 407534 590183 ~ 593200 (+)
ubl5 ubl5 other downstream 925827 1108476 ~ 1110592 (+)

Expression


Co-expression Network