rexo5


Basic Information

Item Value
gene id rexo5
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 276653 ~ 293379 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674411.1
TCCGGCGCTCGGTGCTCGGCGCTCTGCTGATTGGGTCTGGGTCAGGACTGATAGCAGATCAGGAGCAGCAGATCGATCGCTGGCAGTGTCTCTGCGGTACCCTGCAGTGGTTCAGGTGGTACCCTGCGGTGGTTCAGGGGGTATCTGCGGGACAGAAGCTCGGTCCATCATGTCCAGAGCTGTGGGCAGTAAGAGAAAGCTGGGCGGTTCTGCTGAGTCCAGTCCTGCTCAGAAAAGGTTAAAGGCTGGTGAGGAACCGCAGGAGAACCAGGCCGCCGAGGGAGGTACGGACCTGCAGACCAATCAGAACCAGGCAGAACCGGACCTCTCTGTCTCCCAGCAGCACCAGCACAGACCACACCTCTCTCGCCCATCACTGCAGCAGCGCCAACCAATCACTGTGGAGGACGTGTGCAGACTGGTGCAGTACAGCCTACTGGGGACCAGCTACGGATCTCAAAAAcccagCTGGTGTCGTCTCCGGGGGCGGCGCCGGGTGGTCCGGGTTAATGTGGCGGTTCTGGAGGGACTGACCCAGCTCCACTTCTACTCCCATTACTCCCAGTTCAACCAGCTGAGGACCAAATACAGCACTAGATGCACTCTAGCGCCCTCCTCAGGCCACCTGCTGTCTGAGCTCCTCACTGCTGAACTCCCAAACCCACAGTCCAGCCCAGCAGCCCACACAGCACCCCCTACAGctcagGTAGCGTATCACCCGGTGGTTCGGCGCTTTGGTCTGAAGAAGAGCGGGATGAGCAGTTATCTGCTGAAGGAGGAGGAAATGATTAAGAAGAGTTTTCCCATTAAAgGTGGGCGGGGCTGTGAGGCGTTTGCGTGCACTCGGAGCGCTGATCATGTGACCGACAGCAGCCCTCTGTTTGGTCTGGACTGTGAGATGtgtATAACTAAGGCTGGAACTGAGTTACTGATGGGGGGGGTTGGcctggtggacagcagggggcgctgttTGCTGGATGAACTAGTGAAACCATTTAACCCCATCATCAACTACTGCaccagGTTTTCGGGTATAACCCGCTCGATGCTGCAGGATGTAGAAACTCGTCTGCAGGACGTTCAGGTGAAGCTTGTGGATCTGTTGCCGCCGGACGCTGTTCTGGTCGGACACTCGCTGGATAATGACCTGCGGGTTCTGAACCTGGTTCACCCTCATGTGATCGACACGTCTCTGCTGTATCGTAAAGAATTCGGCCAGAGATTCAAACTGAAGCACCTAGCCCTGATCATCCTCAGgagagagatacagagtgaAGAGAGGAAAGGTCATGACCCCTGCGAAGACGCCCGAGCAGCTCTGGAACTCGCCCAGTATTTCATCAGCAAAGGACCAAAACAGGTAGTTGAGACTCACCTGGAGGATCTGTGGGATATTAGTCCTGCTGTCCAACCGTCTGCAGTTAACGGACCACTGACCAACGGACCACTCACCAACGGACCACTGACCAACGGATCACTGCCCATCAACAGACTCAGCCCTCTGAGGTTCTGCTACGCTCTGCACAAGTCGGGTCAGTCGGCTCTGTTCCTGGGTAGATCAGAAACGATGGGCGGGAATAGGTCCAGCCAGATGTGGCGCCGTCACCACTGCAGTACTGACAAACAGGTGGTGTCAGTGGCTGAGCGAGTGGGTGGGGCTTACGCCCTCAGTGTTCTGCAGTTCTCCTCCTACACTGATATACTGAACCACAGTCCAGAAGGGGGCAGCACACCTCACCTGAAGCAgatggCAGACAGGTTAAGGAagatgtgtgtgttgtttgtgggTCCGTTGCCATGGGAACACACAGAGGAGAatgtacacacactgttacgATGCTACGGAAAACTACGCTCCGTCCGACTACTGCGTAAAACACACTcgatgtatgCTGTGGTGGAGTTTCAGCATCTGGAAGGAGCTCAGCTCGCTCTGCAGAACCGTCTCCAGATAAACAACCAAACAATAAAGGTACAGCGGCCGGTCAGTGAACTGACCCTGGACCTGGAGGCGTCTCTGGCGGAGCTACAGGACGATGTTTTAAATGATCATGTGATCTACGTGGGCGGTCTCTCCTCACGACATCATCACCCTGACGACCTGCTCCATACCTTCAGCCAATTTGGTCCCATTCGTGACATCATCACACCTCCAAAGAACTCTGGGAAATTACGAAGGCACGCCCACATCAggttcctcagtgctgACAGCGTTCCTGCAGCAGTGGGTTCTCCGGTGCAGGTGGGGAACCGGACCCTAAATGTGTGTCGGGCTCTAACACCCCCTCACATGCACACCTGGACACACACCTGCCCCGTTACCATGGAGACGAGCGGAGAAACACCTGTCCCAGAGGAGCAGAGAGGGGAGGGGCTGGAGATTACAGCAGGACCTACCTGTCCTCAGGATGGAGTGGTGGAACGTGGGATGAGGACTCTGGACAGAACGGTGGGGAAGATGTTCAGCGCTCTGGAGGAGAACACCCTCAGCATCGTCATCATGCCCGGCGTCAGGAGTGGAGGTGTGGAATATTCCGGTCTGTGTTTCTTGGAGGTGAAACAGGGGTAGACTCTCTGAAACGCTCCCGGGTTGTTCATCACGGCTTTGAAGGACATCAGAGACACGAACACGGACTCAAGATACTTTATAAACTGACTGAAGAAGtttatagtgattttttttgtttttaataaatacatctgTAATCAGGCATCATGTGAACACATGCCTGTACATGCTGCTAAATGATCTTCTGAATACATATTTTACACCAAACTGAAA

Function

GO: NA

KEGG:

id description
K14570 REX1, REXO1, RNH70; RNA exonuclease 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674411.1 True 2782 mRNA 0.55 20 276653 293379

Neighbor

gene id symbol gene type direction distance location
LOC103028503 NA coding upstream 53432 216013 ~ 223221 (+)
LOC111193578 NA coding upstream 88054 187147 ~ 188599 (+)
LOC107197101 NA coding upstream 94004 177680 ~ 182649 (+)
LOC103033028 NA coding upstream 106949 162996 ~ 169704 (+)
LOC103027555 NA coding upstream 151504 98126 ~ 125149 (+)
gtf3c1 NA coding downstream 18287 311666 ~ 341737 (+)
LOC107197104 NA coding downstream 161493 454872 ~ 459776 (+)
LOC103026069 NA coding downstream 248566 541945 ~ 548280 (+)
LOC103043293 LOC108413567,LOC107572909 coding downstream 363289 656668 ~ 728123 (+)
LOC103030233 LOC108413570 coding downstream 441702 735081 ~ 757324 (+)
G99377 NA non-coding upstream 5525 268441 ~ 271128 (+)
G99352 thumpd1 non-coding upstream 11516 264376 ~ 265137 (+)
G99373 NA non-coding upstream 27171 247940 ~ 249482 (+)
G99368 NA non-coding upstream 40860 234857 ~ 235793 (+)
G99367 NA non-coding upstream 42280 232927 ~ 234373 (+)
G99466 NA non-coding downstream 46720 340099 ~ 372617 (+)
G99478 NA non-coding downstream 87815 381194 ~ 423304 (+)
G99497 NA non-coding downstream 125827 419206 ~ 419712 (+)
G99568 NA non-coding downstream 207716 501095 ~ 529108 (+)
LOC111193491 NA non-coding downstream 236624 530003 ~ 532087 (+)
LOC103031902 NA other upstream 239589 20991 ~ 37064 (+)
G99561 NA other downstream 181281 474660 ~ 482219 (+)
LOC103036139 NA other downstream 194095 487474 ~ 496376 (+)
LOC111193579 NA other downstream 240650 534029 ~ 540471 (+)
LOC111193492 NA other downstream 296804 590183 ~ 593200 (+)
ubl5 ubl5 other downstream 815097 1108476 ~ 1110592 (+)

Expression


Co-expression Network