LOC103046652


Basic Information

Item Value
gene id LOC103046652
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 1151611 ~ 1171823 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674439.1
agagggagagagagagagaggtggagtgaatgaaggaaagagaggaagacGAAGAGCGAAGACTGACCAACTCTACACAACCAGCACAACACCAGTGAACACAGgGAAGTCTGATCTGCAGTGCTGACTGAGTCAGGCATGAGTAATCGCTCCATCGCCTGGTGGCTCACCCAGATCGGCCTTCCACAGTACACCACGGCCCTGGAGAGAGAGTATTATGGGCTGGAGggtcttTTCATGGTCACTGATGAGGAGTTGGAGGAGAAAGGCATTGAAGATGCCGAACACAGAGCGACGATCTTAAATCAGCTCCAGAAACACCAGCAGAGACTAAACCCATGCACAGGTGTTGCCGTGGTATCGCTGAAGAGAGTGAGCATGAAGTTCTCTCTGGGGTCGACTCTGGACCGAGCCAAGCCCACCAACCTCTTCCGGCAGAGCATTGTCCCCCGTCTCCGTCGCCGTGACAACCACCGTCTCTCGTCCTGCTCCCAGCTGGATACAATCAACCAGCGCAAACAGAGtaaGCGGAGGAGTGTTGGAGGACTCATCACTCAGGTGTTTTCGGGTCATAAGGAGATGGACTCTTTGAAgaaggagctggaggaggagcttAAACTCAGTACTGAGGATATCAGGAGTCATGCCTGGTACCACGGCCAGCTTCCCCGAGAGGACGTGGGGGATCTTCTGCAGCGGGACGGTGATTTCCTGGTGCGGGACTCGATGTCCTGCAGTGGGGATTATGTCCTGAGCTGCAGGTGGAAGGAGCAGCCCATGCACTTCAAGATCATCAAGATCGTCCTGCGACCAAAACAGGGTTACTCTCGGGAGCTCTTCCAGTTTGAGAACGATCAGTTTGATAACATTCCTGCACTGGTGCGTTTTCACGTTGGTGGGCGGCGGCCTATATCCCAAGCGTCCGGAGCCGTCATCTTTCACCCAATCACACGCAGCCTTCCTCTGCGGGTCATCAGCGAGCGCCAGGCCGCCAAGGCAAAAGTTGAAAAGAATAAGAGGCGGAGCTTAAGCTCTAACCACATGGACACGCTACAGGTCAACAAccctctgctgagGACTGGCAGTCAGCCTGCTAATCTGGAGACAGTGGGAAGACCTTCACTACAGTCAGCACAGTCTGACAGTAACCTGAGAACAGGTGTGTCCCAGAGCTGTCAGTCTCAGGACTCTAGCTCCGCCCCCATGTCTCCCATGTACCGGACAGGAAGTGACCCGTTACTCAGCCCCGGTTCCATTCGCTCGTCTCGTGCCGCCCAGTCGCCTGCTGGGGGCGTCACCCTGCGAGGTTCTGACGGACAGCTGCACTCCAGAGCCCCGCCCAAACCCCTCAGAGTGTCAATGCTGTTTCCTGGAGCCCCGCCCACAACTCCGCGGATAGCGGTCGACCCCGCCTCCTTCTATGATGAGCTGGTGCCCCAGGTTCCGCCCTCCATGCTTCCGAAGGGTCACGCGGCGCGACTGCGCGCCCAGGAGAAGTGGACCAGTCGCGCCCGCCTCACAGAGACCAGCTTCACCTTTCTAGAGGCTCAACGGATGGAGGAGGAGCGACAGATGCTGGAGGAGGAGCCAAGAGTGATTGACGGAGAGGGGGCGGAGCCAGACTGGAAGTTCGAGCGGCCACAGACCGAGACGACTTCCTGCTTTCGTCTCGATGCCTTCAGGTCGCTGCTGCTGCCGGACAACAACCGTCCTCTAGAGCAGAGCGTCCTGCACTCCGTCAAAGAGCTGTTCACCCGCACCGACGCCGCGGCAACCTccctgcacatgctcagtgtgGACTGCCAGGTAGCTCGTGTAACAGGTGTGACGGCGGAGCAGAAGAGGATCATGGGAGTGGATTCTGGGCTGGAGCTGATCATGCTGCCTCATGGAAGCCAGCTGAGAAAAGACCTGCTGGACCGacATCAGCTCATAGTGTTGGGAATAGCCGTGGATATTCTGGGATGTACCGGTTCCGTTAATCAGAGGGCGGCTGTTCTCCATAAGGTGATCCAGTTGGCCCAGGCCCTGAGGGACACCGCCCACGACCTGTACGCCTTCTCCGCCGTCATGAAGGCTCTGGACCTTCCTCAGgTGGTGCGGTTGGAGATGACGTGGCGAGTGTTGAGGAGGAATCACACTGAGAGCGCGGTGATGTTCGAGAAAACTCTGAAACCCTTGATGAAGTCTCTGAACGAGGGAGATGACTCGGTGGTGTCGGGACCCGTGGCTCTGCCGCACATAGTGCCGATACTGAGGCTGATGGAAGGTGAGGACGCAGTGGAGACCTCAGAGAGAGGCTGCCAGCTCCTCTACAGCATCCTGCAGTCCGCCCGCAACACCGCCGACCACGCCCACCTGCACCAGCAACACGCCCACACACTGCTATCAGCTGGTTGGGAGCCAATCCCGGAGCTGCTGGAGGCGTTCCGGACGGAGTTCGCTCTGCGGCTGTTCTGGGGTCAGGCCGGAGCCGAGGCGCCGAAAAAGGAACGCTACGAAAAGTTCGAGAAGATCCTCACCGTCCTCTCCAACAAACTGGAACCAGCTCAGACCACTGAAGTCTGATCTACAGAACCTTCATCAGAACCCACTATAGAGTTTCCCTCCACAGAACAGTGGAATAAAAGCAGACGTTTGGACGTTTTGATGGATGTTTTACATTTAGATCCTTCAA

Function

GO: NA

KEGG:

id description
ko05217 Basal cell carcinoma

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674439.1 True 2677 mRNA 0.57 17 1151611 1171823

Neighbor

gene id symbol gene type direction distance location
LOC103023562 NA coding upstream 183498 961275 ~ 968113 (+)
LOC103026766 NA coding upstream 199997 941924 ~ 951614 (+)
LOC103027056 LOC108413120 coding upstream 217410 904230 ~ 934201 (+)
LOC103027665 LOC108413281,LOC108412240 coding upstream 255811 889210 ~ 895800 (+)
LOC103027992 LOC108413169 coding upstream 267076 855966 ~ 884535 (+)
LOC111193496 NA coding downstream 46934 1218757 ~ 1228783 (+)
LOC103028492 NA coding downstream 61267 1233090 ~ 1236197 (+)
LOC103027248 LOC103027248 coding downstream 68340 1240163 ~ 1243893 (+)
LOC103027651 NA coding downstream 76744 1248567 ~ 1253895 (+)
LOC103031973 dnm2,LOC105929264 coding downstream 131330 1303153 ~ 1326104 (+)
G99674 pin1,LOC107571794,LOC107727173,LOC107685032,LOC107662743 non-coding upstream 44115 1039796 ~ 1107496 (+)
G99677 NA non-coding upstream 47902 1051900 ~ 1103709 (+)
G99690 LOC108412243 non-coding upstream 65814 1081118 ~ 1085797 (+)
G99682 NA non-coding upstream 89430 1061716 ~ 1062181 (+)
G99671 NA non-coding upstream 123387 1027849 ~ 1028224 (+)
LOC103027978 NA non-coding downstream 85221 1257044 ~ 1289874 (+)
G99726 NA non-coding downstream 89919 1261742 ~ 1263514 (+)
G99734 NA non-coding downstream 161447 1333270 ~ 1333914 (+)
G99736 NA non-coding downstream 185269 1357092 ~ 1358954 (+)
G99899 NA non-coding downstream 205195 1377018 ~ 1419192 (+)
ubl5 ubl5 other upstream 41019 1108476 ~ 1110592 (+)
LOC111193492 NA other upstream 558411 590183 ~ 593200 (+)
LOC111193579 NA other upstream 611140 534029 ~ 540471 (+)
LOC103036139 NA other upstream 655235 487474 ~ 496376 (+)
G99561 NA other upstream 669392 474660 ~ 482219 (+)
G99710 NA other downstream 9604 1181427 ~ 1184269 (+)
LOC111193582 NA other downstream 124592 1296415 ~ 1298377 (+)
LOC111193593 NA other downstream 673668 1845491 ~ 1853019 (+)
LOC103047668 NA other downstream 713405 1885228 ~ 1889237 (+)
LOC103038569 NA other downstream 840206 2012029 ~ 2016263 (+)

Expression


Co-expression Network