LOC103027992 (LOC108413169)


Basic Information

Item Value
gene id LOC103027992
gene name LOC108413169
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 855966 ~ 884535 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674450.1
AGGCTGCGCTTCCTCAGTCTCAGGTGAATCCGCAGCGCGTAGAGAGAAGTTACGAGGATTTATACAGCCGAACCGAGCCGGTACCGGTCCGGACGGGCATGGAGTGAGCGGGGGAGAACCGGAGCCGGGGTCAGAAGAGTCTCGATCTTGAGGAGACTGGAAGTTTATTCCGTCGGTTTGTTGAAGAAGAACCACATTAATCAAACCCCGATGCCTCAAACAAGCCAATTAGTTTATTGAACTTAATTTTCACCAGAACCGCCCCATCAGCGTGTCAATCAACACGCCAATCCCTGCCCAAATTGATCACCTCAGATCTTTTCCTCTGGTTGGGATCTAAAAACCTTCAGTTATGTCCCTAATGGGCGGCACAGTGGCACCCAAGCCAGTCTGCTACACCAACGCTACGGTAAAGTTCTTCTACGAGTCGTCTGGGAAGAACATCTCGGACACATGGAGGACGCAGGACTACATCGTGGTGGGACTTGGACTGACGGTGTGCGTCTTCATCATCCTGGCCAATATCTTGGTCATTACCGCCATATTCATTAACCGGAGGTTCCACTACCCGATCTACTTCCTGCTGGGGAACCTGGCGGCGGCGGATCTCTTCGCCGGGATCGCCTACCTGCACCTGATGTTCCACACGGGGCCGTGGACCCAGAGGCTCACCAGATACCAGTGGTTCCTCCGACAGGGTTTGATAGACACCAGTCTCACGGCGTCGGTGATTAATTTGATGGCCATCGCTCTGGAGAGACACCAGACCATCTTCACCATGCAGCTGCACAGTAAGATGACGAACCGCCGGGTGTTCCTGCTGATCCTCAGTATCTGGCTGGTGGCCACGCTGATGGGGCTGGTGCCCACGCTGGGCTGGAACTGCGTCTGTAACCTGGCCAGGTGCTCCAAGATGGCGCCGCTGTACAGCCGGGACTACCTGGTGTTCTGGGCGGTGCTGAACCTGGTGAGCTTCACCATCATGGTGGTGGTCTACACCCGCATCTTCATCTACGTCCGGCACAAGAGCCAGCGCATGAGCCAGCACACCACCCAGTCCCGCCACAAGGAGACGGTGGAGAGCCTGATGAGGACCGTCTTCGTCATCCTgagtTGTTTCGTGATCTGCTGGACTCCAGGTTTGGTCCTGTTGTTGCTGGACGGGGTAAACTGCGGCATCATCGTCCTGAAGTTTGAGAAGTACTTCCTGGTTCTGGCCGAGTTTAACTCCCTGATGAACCCGATCATCTACTCGTACCGGGATCAGGACATGCGCCGCACCTTCAAGCGTATCCTGTGCTGCCTGTGTCCTCGCGCCGGCCACAAGGGGCCGCACGCCGGCGTCCGGTTCAACACCCTGGACCAAGAGGCACATAAGATGACATGCATTGAAGAAGACCCAAACAGACACCCGAACGGGACTCACCTGGTGCTACAAGGTGCTAACGATCTTCAGAACTCCAGCGTGAGCTGAGTCCTGCTGAAGCGAAGCTGGTTTTATCGTTAATGtagcaataaaaaaactgaccaaaaccgGCCACTCATCTGCTACTGTCtggactttctctctctctctttgtttttggaccaactgtgaagaaaaaaactaaaccgAATACATACCTTTGTTGTTCTAGCATCACAAGAAAAAAGGGTAAATTGTAaagtaatatagtgtaatgtaGCGTTCACTGTACATCACTGGGCAGCTTTAAAATCATAAACTGACTTGTTTTAACTGTCAATTCTGTTAATTTAAGGAATTTAAGTACCTTAAATTCCTAAATTGTGTTTAGTATACCTGGAGCTATGAGGTTGATGTGGCTAACAAAACAAGTAACAGGAGCTTATCTTAGCTTAGCACGGACAATAGATCGCAACATACCAATTACAGGTCTAAACCAGACTCCACTCATTCCTAAAACTGTGTCAAAGTGTTGGGTAATCTTTAATACAGTAGATATTTGTTGGTTTTATAACTGTACGATTAGTTACATGGGCTAAAACatgctaatcaaagctaaaaacagcaacagcATCTAATGCTTTGTTCCATTTAAACGTCAAAATGTCCAAGTCCCACATAGGAAATTGAAACGGGAACATCCCCACAAGTCAAAATTTCCTACTTGATAAGTCAAGAAAGCCTTGCTATCCCCAATTCTGGATTCAAGATGGCCACCTCACACACAAGCAGTATTAAAACCATATTATTatgcagtttattttttttttatcacttttttattattttacaaatttcTATCCATTAACATGCTAGAACAGGGTTTGAATGcacagaatactaaatacttCACTATATTTTCACTgtattgctaacaatgctaatctgAGGCAATGTAACTAGGACATGTTTTGAAAGGAAAATACTGGTAAATGAATGTCAAACCAGTTGTGGTTAAATTTAATCACTTAGTTATAAATAagttctttatctttatgtgagcatgattttggtaaaaaaaaatatatatgaacatgttttgtatagaataTAGACTTACAGTATTCTAACTTGTATAGGAACATCTATAATATGTCTCTTAATGCCTATTAGTGTCCAGTGTAAAtttttaaatagtgtaaaatTATTGGAATGTTTACCTGGAATTTAGTCAGTTCCAGcatctgaggtaaatggaaCATAGCATTAGCATGTTCGTATACATTTTTGCCTAGTTTTCAATTAATTACCAAAGAAAATTTGAGCCTTTTTGAGTAAGctatatttctatttaaaattcTCAGTGACTCCTTTCTAATGAAATGGCGCCCCTTGCGGCCCTTTATATGAATTTGAGGCCAGATGTGGCCTGTGtgaatctaataaaattcactttttggcagcttgtttatattttgatggttattgttaatattatatataatcatatgcaaaaatgtttctgttttatttaaaaaaaacagaatatgtaaacttcaataaataaaactaaaaagcaCAAAAGTTATAACTTATTTACATCAAATTTACAGGTTAGTCAACGGTTCACAAATGTACCATTTGCACACCAGtaagtatgtgtatatgtaatCTATCATTGACTCTTTTTAAACTTTGTACATAAGTAATTAATGCAGTGCCCTTAAACTTCTTTTGTTTAGAACTGTTTATATAAAGTTGTATTAGGTTTGCCTgacttaaaaaatgcatttattttttttaataatatttacaata
>XM_022674451.1
AGGCTGCGCTTCCTCAGTCTCAGGTGAATCCGCAGCGCGTAGAGAGAAGTTACGAGGATTTATACAGCCGAACCGAGCCGGTACCGGTCCGGACGGGCATGGAGTGAGCGGGGGAGAACCGGAGCCGGGGTCAGAAGAGTCTCGATCTTGAGGAGACTGGAAGTTTATTCCGTCGGTTTGTTGAAGAAGAACCACATTAATCAAACCCCGATGCCTCAAACAAGCCAATTAGTTTATTGAACTTAATTTTCACCAGAACCGCCCCATCAGCGTGTCAATCAACACGCCAATCCCTGCCCAAATTGATCACCTCAGATCTTTTCCTCTGGTTGGGATCTAAAAACCTTCAGTTATGTCCCTAATGGGCGGCACAGTGGCACCCAAGCCAGTCTGCTACACCAACGCTACGGTAAAGTTCTTCTACGAGTCGTCTGGGAAGAACATCTCGGACACATGGAGGACGCAGGACTACATCGTGGTGGGACTTGGACTGACGGTGTGCGTCTTCATCATCCTGGCCAATATCTTGGTCATTACCGCCATATTCATTAACCGGAGGTTCCACTACCCGATCTACTTCCTGCTGGGGAACCTGGCGGCGGCGGATCTCTTCGCCGGGATCGCCTACCTGCACCTGATGTTCCACACGGGGCCGTGGACCCAGAGGCTCACCAGATACCAGTGGTTCCTCCGACAGGGTTTGATAGACACCAGTCTCACGGCGTCGGTGATTAATTTGATGGCCATCGCTCTGGAGAGACACCAGACCATCTTCACCATGCAGCTGCACAGTAAGATGACGAACCGCCGGGTGTTCCTGCTGATCCTCAGTATCTGGCTGGTGGCCACGCTGATGGGGCTGGTGCCCACGCTGGGCTGGAACTGCGTCTGTAACCTGGCCAGGTGCTCCAAGATGGCGCCGCTGTACAGCCGGGACTACCTGGTGTTCTGGGCGGTGCTGAACCTGGTGAGCTTCACCATCATGGTGGTGGTCTACACCCGCATCTTCATCTACGTCCGGCACAAGAGCCAGCGCATGAGCCAGCACACCACCCAGTCCCGCCACAAGGAGACGGTGGAGAGCCTGATGAGGACCGTCTTCGTCATCCTgagtTGTTTCGTGATCTGCTGGACTCCAGGTTTGGTCCTGTTGTTGCTGGACGGGGTAAACTGCGGCATCATCGTCCTGAAGTTTGAGAAGTACTTCCTGGTTCTGGCCGAGTTTAACTCCCTGATGAACCCGATCATCTACTCGTACCGGGATCAGGACATGCGCCGCACCTTCAAGCGTATCCTGTGCTGCCTGTGTCCTCGCGCCGGCCACAAGGGGCCGCACGCCGGCGTCCGGTTCAACACCCTGGACCAAGAGAGAAGGCGACAAGAGTTGGAAGACTCGTGGATAGCTTGTAAATTGTCTTGCGCTTCATCCTCGTGATCGGATGAACAAAATCAGACTATTCCATTCATGTGACGAATCCACTAAACTCTCGTTTTTGTGATTTAtgaatgatttatttttgtttttcttttctttttcacctGATTCTTATTGTTGCTGTTCCTCCCATCCTGCAGAGCTACGACTGTATTTTGCTGTGCTAATGTTCGGTGTGTTCAGTACGTAGCGTTTTAATGCCTGTTCAGGTGCTTTTGTaatgctatgctaagctaaactatgctaagctaagtgTAATTCCAGCACTGtatggtttgtgtgtgttggggtgtgtttTAGTCATGCTAAATTCAGGGGTTTAACAGGATAATGACCTTAGCAGCTGTGCTAGCAGCCCATATAGTGTTCAGTGCTAATGTACGTGTGGAAATGTGTTAACTAGCGCGCTAATGCACCCCAGCTTGAGATTAGCTCCACATTTTTGGTGTCAATGACCTCAGCGTCGCTCAGGTTGTTCTGAAGTGGAGTCGATCTCACTGCGACCCCCCTGACCCGGCGCTAGCAGATGTTTAGCGACTCCCCACTGTGTTTGTCATGCTAATGTCGCTATGTGATTGGTTTACGAGCtcgtctgtgtctgtgtgtacagtaatcacttaaatatttacacatccGTCCTCCTCGGCAGATTAACAGCGTTGCACAGATGGAAACATTTTAGCGTTGCGTTCGATGAGTCAGGGAGAATTTTTGCGTTACACCGAATTGTTTTCTAACCACTTTCCGGTCGTTTGTTTGTCCCCCACCAACCAGCACATCCTCACAAAGGCATGAACTCAAGAGTGTCCAATTTATACGCTCCCAGAAACCATCAGTTCCCTCTGTGTGATAGAACTGATTTTTAATAGATCTTATAGATTGTGGTGTTTAGCCTGTTTCAGCTGGTTTAGTAAACAGCAAATTCACACACGACTAGATAAAACCGGCTAAACACCACAATCTATTCATTCAAAATCACCTAAAACCTGCTACACATAATCTGTCAacttaaaattaactaaaacagACTAAACAACACAATCAGTTCATGCAAAACCAACTACAACAATtaagaaatgaatgaaaacctgcTAAA

Function

NR:

description
PREDICTED: lysophosphatidic acid receptor 1-A-like isoform X2

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0001525 angiogenesis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0070915 lysophosphatidic acid receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674450.1 True 3223 mRNA 0.43 5 855966 884535
XM_022674451.1 False 2531 mRNA 0.50 5 855966 880282

Neighbor

gene id symbol gene type direction distance location
LOC103028300 LOC107686882 coding upstream 7864 830395 ~ 848102 (+)
LOC103028614 LOC108415945,LOC106564086 coding upstream 26485 814460 ~ 829481 (+)
LOC111193580 NA coding upstream 46521 807014 ~ 809445 (+)
mvb12a NA coding upstream 76104 769009 ~ 779862 (+)
LOC103030233 LOC108413570 coding upstream 98642 735081 ~ 757324 (+)
LOC103027665 LOC108413281,LOC108412240 coding downstream 4675 889210 ~ 895800 (+)
LOC103027056 LOC108413120 coding downstream 19695 904230 ~ 934201 (+)
LOC103026766 NA coding downstream 57389 941924 ~ 951614 (+)
LOC103023562 NA coding downstream 76740 961275 ~ 968113 (+)
LOC103046652 NA coding downstream 267076 1151611 ~ 1171823 (+)
G99623 NA non-coding upstream 4497 848199 ~ 851469 (+)
LOC103024499 NA non-coding upstream 63866 790106 ~ 792100 (+)
G99604 NA non-coding upstream 224132 631505 ~ 631834 (+)
G99596 NA non-coding upstream 243966 606380 ~ 612000 (+)
G99588 NA non-coding upstream 275229 580352 ~ 580737 (+)
G99642 NA non-coding downstream 11884 896419 ~ 896789 (+)
G99645 NA non-coding downstream 12812 897347 ~ 898314 (+)
G99651 NA non-coding downstream 84367 968902 ~ 971158 (+)
G99654 NA non-coding downstream 94195 978730 ~ 980663 (+)
G99656 NA non-coding downstream 100366 984901 ~ 986268 (+)
LOC111193492 NA other upstream 262766 590183 ~ 593200 (+)
LOC111193579 NA other upstream 315495 534029 ~ 540471 (+)
LOC103036139 NA other upstream 359590 487474 ~ 496376 (+)
G99561 NA other upstream 373747 474660 ~ 482219 (+)
LOC103031902 NA other upstream 818902 20991 ~ 37064 (+)
ubl5 ubl5 other downstream 223941 1108476 ~ 1110592 (+)
G99710 NA other downstream 296892 1181427 ~ 1184269 (+)
LOC111193582 NA other downstream 411880 1296415 ~ 1298377 (+)
LOC111193593 NA other downstream 960956 1845491 ~ 1853019 (+)
LOC103047668 NA other downstream 1000693 1885228 ~ 1889237 (+)

Expression


Co-expression Network