LOC103030233 (LOC108413570)


Basic Information

Item Value
gene id LOC103030233
gene name LOC108413570
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 735081 ~ 757324 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674461.1
ggagggaggtagagagCGAGGGAGCTTGAAGACACTTGTTCTGTTCCGATCGAACTGGTGCAGCATCTTTTCGTTTATTCCTCCTTCcatctctcgccctctctcacTTCACCACTCTATTTCTTCACTTGTTTTATATCCATCTGTTTATCTCTATCCTCCACTCTATccgtttatctctctctcaggtcaGGCAGAGGACACTCCTCAGTACAGGTCTGAGGAGCTTCTGAAGTCTGGAGAAGTTCGGAAGTCGGTCCGGTTCGGGATTTTGTTCGTAACGCATTCCGTTTCGCTCTGGATTATCGGTGTTTGGTGTTGTTGCAGTTTGGTCTACGATATTCTAAGAGAACATCACACCAGCTTTACACCAATCCCAACGTTCCAACAACCTCCCAGAACGGTCTGTAGCACCAGAAGGGAATCATCCCGAAGTTTCATCTGTCGCTCAAGAAGAATTCGGTACGACTCTTCGGGAACTGTTCTGAGACTCGTTCTTCATTGTTGGAAGAGTATTTTGGTTATTTCCAACATGATATCAGGATTACTTCAATGTTCCTCCACAGGTTCTACACCACTGCTGCATTAATGCTATCTTGAGGTTGACACCGTTCTCGCCCTGGTCCCCTGAAATACTCCCACCAAGAGCACCACCGTTCCTGTACCGTTTCAAAGTCCTGCCAGTAAACAGTGATGAGCGTTCCCATTCTGAAGATTGGCATGGTCCTCAGCACCATGGCCATGGTCACCAACTGGATGTCCCAGACTCTGCCCTCACTGGTGGGACTCAACCAGACCCTGGCACGACCCGGAACATCTGAGAAGATCATCAGCgtTCAGAACGTGTCTCAGTATTTGGAGGTGCTGGATTTGCGAACATCTCGAGATCTGCATTATCTTCGAGAGTCGGAGCAGCGAGTGAATTCAGTCGAACGAAGAGTGAAAACAGCCCATAATAACCTCCAGAGCCTCTCCGCTAAAGGCCTACAGGACCTGAAGCAGAGCGTGAACGAGTGTCTCCCCCTGCTGGCGGTTGTAGCTCAGTACAGCGCAGACGTGGGGCAGCTGGACTACCTTAAGCAGGAGGTGGAGAGGTTAAGCACCGCCCTCATTCTCCTACAGGAGCAGCTGGAGGCCTACGATTACAGCCAATTACAGCACAGGGCCATCTTACTGGAGGGCCAGCTACACACCTGCATCAACACACTcgGATGTGGTAGGCTAACAGGCATCAGTAGCCCGGTCACCATTAGGTCCTTTGGGTCCCGATTTGGCTCGTGGATGATGGACAGTATGATGCCCAGCTCGGATAACCAGGTCTGGTCTATGGACGGGTACTTTAAGGGCCGGCGAGTCTTAGAGTACGGGTCCATCGACGACTTCACCAAGGGACAGAACTTCGTGGTGCATCAGCTTCCCCATCCGTGGGCAGGTACGGGTCACGTCGTTTATAACGGTTCTCTTTACTACAACAAACACCAGACCAACATCATCGTCCAGTACCACCTACTCACCCGGAGCGTCCTGCTGCAGCGCAGTCTGGGCCAGGCCGGCTACAACAACACCTTCCCCTACTCCTGGGGTGGCTCGTCCGACATCGACCTCATGGCTGACGAGACCGGCCTGTGGGTGGTGTACACTACCATCCCCAACGGCGGGAACATGGTGGTGAGCCGGCTGAACCCCGCAACCCTGGAGGTGGTGAGGTCCTGGGACACGGGCTTCCCCAAACGAAGCGCCGGGGAGGCGTTCCTGATCTGCGGAACGCTGTACGTCACCAACTCGCACCTGGCCGGAGCCAAGGTCCACTTCGCCTACCACACGAACACGTCCTCGTACGAGTACACGGACATACCCTTCCACAACCAGTATTCGCACATCTCCATGCTGGACTACAACCCGCGAGAGAGGGCGCTCTACACGTGGAACAATGGCCACCAGGTGCTCTACAACGTCACGCTCTTCCACCTGATCCAGAGCTTCGCCGACACCTAGACCATGGAACCAACTAGGAGCGACAAGACGAGGGAGTTACTGGGGCGTTCCAGTCTGACCAGAACAATTGAACCAATCCTTTGTTTGACCTTAGTCAAATTCTAAAAAGACGTTTTAAAAAGCATTCTAAACAAAACGTGTTCTATATAGTACCGGAAAAGGGTTCTCGAacttttagaaaaattttgCAACCATCATAGGTGCCATATAGAACTACTTCTAAATAGTTCTTCAGATATTCCTTCATACATGAAGAAACATTCGGCCAAGCAAAGTcttgtttttcagttttgttttagttgtCTTGGTTCTGTGTACAACAATTGCTTTTAGCTTCAGCAATAATGGTTCCCTGACTTCTAACAATTATAAAACCATGTTGGTGCTCTGAAGAAGAAGCATTCTTAAAAGGTTCTTCAAAAAATCTTTGTAACAAAGATCAGTTTTGTTTTGGTCTACATGGATCTAGTTCCTTCATTGAAGAACCTTTGAGGAACCTTGGATTTAAAGTTGTAAACTTTGAACAAAAGGAATTTTTTTGTTGCCGATCAAGGTAAATTCTGACTCTGACTCATAGCAATCATAAACCATTTGTGGTGATACATAGAACCATGTCTtaagaaaacatttaagaacCACTGCTTTTGCTAAAGAACATTTGAAGAACCCCTGTTTTAAGAATGTACTCTATAAGCTAAGCACACATGGTTAAATTTTAGGGTTGTAACCATTGGGGAACCAATTATGGTGCTATATAGAACCATTTTTCTGTAGTCTTTAAATTTTCCCTTGTATGTACAGCATGTAAAACCAaagcttttactaaaagaatCGTTAAAGGTATACACTCTTATGGGACTGAAAAAGGGGAGTTCTCTAACTTGTAGCAATTGTGGAACCATTTGTGGTGCTTTATAGAACcaacttttaaaaagttcttaaaaaaaaatagaaccaaTACTTTTACTGTAACAacttttaatcagattttaaaagGAAGTTCTCGGGTTCGTAGCCAGTGTGAATCTATTTGACGCTATATAGAA

Function

NR:

description
PREDICTED: noelin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674461.1 True 3041 mRNA 0.47 6 735081 757324

Neighbor

gene id symbol gene type direction distance location
LOC103043293 LOC108413567,LOC107572909 coding upstream 6958 656668 ~ 728123 (+)
LOC103026069 NA coding upstream 186801 541945 ~ 548280 (+)
LOC107197104 NA coding upstream 275305 454872 ~ 459776 (+)
gtf3c1 NA coding upstream 393344 311666 ~ 341737 (+)
rexo5 NA coding upstream 441702 276653 ~ 293379 (+)
mvb12a NA coding downstream 11685 769009 ~ 779862 (+)
LOC111193580 NA coding downstream 49690 807014 ~ 809445 (+)
LOC103028614 LOC108415945,LOC106564086 coding downstream 57136 814460 ~ 829481 (+)
LOC103028300 LOC107686882 coding downstream 73071 830395 ~ 848102 (+)
LOC103027992 LOC108413169 coding downstream 98642 855966 ~ 884535 (+)
G99604 NA non-coding upstream 103247 631505 ~ 631834 (+)
G99596 NA non-coding upstream 123081 606380 ~ 612000 (+)
G99588 NA non-coding upstream 154344 580352 ~ 580737 (+)
G99582 NA non-coding upstream 159678 569657 ~ 575403 (+)
LOC111193491 NA non-coding upstream 202994 530003 ~ 532087 (+)
LOC103024499 NA non-coding downstream 32782 790106 ~ 792100 (+)
G99623 NA non-coding downstream 90875 848199 ~ 851469 (+)
G99642 NA non-coding downstream 139095 896419 ~ 896789 (+)
G99645 NA non-coding downstream 140023 897347 ~ 898314 (+)
G99651 NA non-coding downstream 211578 968902 ~ 971158 (+)
LOC111193492 NA other upstream 141881 590183 ~ 593200 (+)
LOC111193579 NA other upstream 194610 534029 ~ 540471 (+)
LOC103036139 NA other upstream 238705 487474 ~ 496376 (+)
G99561 NA other upstream 252862 474660 ~ 482219 (+)
LOC103031902 NA other upstream 698017 20991 ~ 37064 (+)
ubl5 ubl5 other downstream 351152 1108476 ~ 1110592 (+)
G99710 NA other downstream 424103 1181427 ~ 1184269 (+)
LOC111193582 NA other downstream 539091 1296415 ~ 1298377 (+)
LOC111193593 NA other downstream 1088167 1845491 ~ 1853019 (+)
LOC103047668 NA other downstream 1127904 1885228 ~ 1889237 (+)

Expression


Co-expression Network