khsrp (khsrp)


Basic Information

Item Value
gene id khsrp
gene name khsrp
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 2369956 ~ 2389979 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674492.1
TCTGTCCCTCTCCGTGTCCCCCCGCGGTTTCTTCCCTTCGCCTTCCCGCTCCTGCGCACCACCTCTCGGCCCGCATCTGCCCCTCCGTCCCCCTGCGCTCACATTCACGGAGAGAAATGTCGGAGTATAACGCGGTGCCGCCGCCCGGAGCCCCGGGGGCAGGAGCTCTGGGAGCCGGCGCGATCAAGAAGGACGCCTTCGCGGACGCGGTGCAGCGCGCCCGCCAGATCGCAGCCAAGATCGGTGGAGATGTTGCGCCCCCCCCTATGAGCAATAACGGTGGTAGCGAGAGCTACCCATTCGCAGCACAAAAACGATCCTTGGAGGATGGAGATCAGCCAGACAGTAAGAGGATGGCCTCTCAGAGTGACAGGGATAACGCTACAGCGCTGTCTATCGGGGCTCAGCTGGCTGCCCTGTCTCAGCAGAGTGGACGTCCCTCCTCAGTAACGGAGGAGTACAGAGTGCCTGATGGAATGGTCGGACTCATCATTGGTCGAGGAGGAGAGCAGATCAATAAGATCCAGCAGGAGTCTGGCTGTAAAGTTCAGATTGCTCCCGACAGTGGAGGTTTACCTGAGAGAAGTGTGTCTCTAACTGGGTCTCACGACGCCATTCAGAAGGCCAAGATGCTGTTAGATGACATCGTTTCGCGGGGGCGGGGCACTCCACCCTCGTCTTTCCACGAGACCAACGGCAGCGGCCACATGCAGGAGATGATGATTCCAGCGGGAAAAGCCGGCCTCGTCATCGGCAAAGGAGGAGAAACCATTAAACAGCTTCAGGAGCGAGCTGGAGTGAAGATGATCCTGATTCAGGATGCGTCTCAGGGACCCAACATGGACAAGCCCCTTCGCATCATTGGAGAACCCTACAAAGTGCAGcaAGCTCGGGAGATGGTGCAGGAGATCCTGAGGGAAAGGGATCATCCTGGGTTCGGAGAGAGAAACGACTACGGCTCTCGTAtgggcggcggcggcggcggaggaggaggaggaatagaggtgtgtGTACCTGTTCCCCGTCACTCTGTGGGCGTCGTGATTGGCCGAAACGGAGAGATGATCAAAAAGATTCAGAATGATGCTGGAGTCAGAATACAGTTCAAACCAGACGACGGAAACGGACCTGATAAGATCGCTCACATCATGGGTCCTCCTGACCGCTGCGAGCACGCCGCCAGCATCATCAACGACCTGCTACAGAGCATCCGCGTCCgagaggagggaggagggGGACCCCCTGGTCCTCCTGGCACAGGCATGCCTCCAGGTGGGCGTGGTCGAGGGCGTGGCCCAGGTAACTGGGGTCCTCCAGGCGGCGAGATGACCTTTTCTATCCCCGCTCACAAATGTGGCCTCGTGATTGGTCGGGGAGGTGAGAACGTGAAGGCGATTAACCAGCAGACTGGAGCGTTCGTGGAGATCTCGCGCCAACCGCCACCCAACGGAGACCCCAACTTCAAACTGTTCACCATCCGGGGGTCACCGCAACAGATAGACCACGCCAAGCAGCTCATCGAGGACAAGATTGAGggTCCTCTGTGTCCTGTAGGTCCCGGTCCTGGTGGTCCTGGTCCAGCTGGTCCAATGGGACCCTACAACCCAAATCCATATCAGCCGGGACCCCCAGGAGCCCCTCCACATGGTGGTCCTCCAGGTGCACATCAGTACCCTCCTCAGGGCTGGGGGAACACCTATCAGCAGTGGCAGCCGCCCGCGCCCCATGACCCCAgtaAGGCAGCAGCAGATCACAGTGCGGCCTGGGCAGCGTACTACGCGCAGTACTACCAGCAGCCTGCGGGCGGCGCCATGCCCGGCCAGACGCCCAGCGGACAGCCGGCCGCCCCGGCCCCCGCCGACCAGAGCCAAGCAGCCCAGGGTGCGGGTCAGCCCGACTACACCAAAGCCTGGGAGGAGTACTACAAGAAGATGGCTCAACAGGGCGGTGGCGCTGCTCCAGCAGCAGGGGGCACTCCGGCGGcggcgggagctgcaggaggacaGACTGATTATAGCGCCGCCTGGGCGGAGTATTACAGACAACACGCTGCTTATTACGGCCAAACCCCACAGACACCCGGCCAGCCTACAGCTGCTCCACAGGGCCAGCAGgcacaGTGAAGCTCTGAACTCTGACAGCCCCTCGGCTCACTGGTCCTCCCACTCGATCACTCGTCCTCCATGATTTCCACTGCAGCCCACCGGctcttcccttttttttattttcaccttttttccCTCCCTGCCCttcctcctttttctttttttttgtatctcgTCGTCTTCGTCTTGTTCCAGGTGACACAAATGAACAAACGGAAGCCTTTCTTAACccgctcctcctcttcctcacctcgtcgttttcgtttttttttttttgtttctgctgaAATGgactaaagaaaaaacaaacaagcgtAGCTgactcttcctcactctcctcctcctcctcctcctcctcctcctgacaGAGTAAATGATTTGATTCTGAAACCGTCGCCAGGAAAACTAAAGGGAAATGCGTCTCATCACCGGCTAACCTCCACCATCTCCATCCTCCTGCGTAGATCTTACGTCACACATGGACTTGCACTTCAGTTCGTCTCTTTcgcttcttcttctcttcttaacgtcttccttctttttttttttttaatgaataaaatattgggAAAGAACgtttgggtggggggggggggggtttgagGGTGGTCTGTTAAACATCCAGGTGTTCTTACTGCGTTTAATACGTGTCCAGCGACTGTGTTCTtctcttaatttgtttctttattttattacttttgtttcccctttttagacttttaatttgttttaaaattaagttcTCTAGTTGAGTTGAAACATTCCCAGTGTCTTCTTCATTCTGAGCTTTTACTGTctcgtgtgtgagtgtgtgtgtggtcctcCTGAAGTGTGAATGAGGTACTGATTAAATGTATGTGATCTTCCTAACGAATTAccgccctgtttttttttttttttttctcttcccgACTTTAAAAAGCCCCGatgtttgtttatataaatatatattgaaggctttttttttttttttactttattgctcGTTTTTAAAGAACTTCACAATAAAAGGAGATATGCAGACCGTTTTTCTTTCTGTCGTTGCTCACTTTGCTACTGAGTCAGCAGAGTGTGAACTACTTTTAGTTTCTAGGAGCTCATGACGTGGGGTGTAATTACCATATAATGTGATTTACAACATTTTCACTAAAACTGTCATCAGGTTCAGCGAAACCCCCCTCCCTGTGTAACttcgttttttctttctgtaacatgtttcaataaaatccaaaaatgaa
>XM_022674493.1
TCTGTCCCTCTCCGTGTCCCCCCGCGGTTTCTTCCCTTCGCCTTCCCGCTCCTGCGCACCACCTCTCGGCCCGCATCTGCCCCTCCGTCCCCCTGCGCTCACATTCACGGAGAGAAATGTCGGAGTATAACGCGGTGCCGCCGCCCGGAGCCCCGGGGGCAGGAGCTCTGGGAGCCGGCGCGATCAAGAAGGACGCCTTCGCGGACGCGGTGCAGCGCGCCCGCCAGATCGCAGCCAAGATCGGTGGAGATGTTGCGCCCCCCCCTATGAGCAATAACGGTGGTAGCGAGAGCTACCCATTCGCAGCACAAAAACGATCCTTGGAGGATGGAGATCAGCCAGACAGTAAGAGGATGGCCTCTCAGAGTGACAGGGATAACGCTACAGCGCTGTCTATCGGGGCTCAGCTGGCTGCCCTGTCTCAGCAGAGTGGACGTCCCTCCTCAGTAACGGAGGAGTACAGAGTGCCTGATGGAATGGTCGGACTCATCATTGGTCGAGGAGGAGAGCAGATCAATAAGATCCAGCAGGAGTCTGGCTGTAAAGTTCAGATTGCTCCCGACAGTGGAGGTTTACCTGAGAGAAGTGTGTCTCTAACTGGGTCTCACGACGCCATTCAGAAGGCCAAGATGCTGTTAGATGACATCGTTTCGCGGGGGCGGGGCACTCCACCCTCGTCTTTCCACGAGACCAACGGCAGCGGCCACATGCAGGAGATGATGATTCCAGCGGGAAAAGCCGGCCTCGTCATCGGCAAAGGAGGAGAAACCATTAAACAGCTTCAGGAGCGAGCTGGAGTGAAGATGATCCTGATTCAGGATGCGTCTCAGGGACCCAACATGGACAAGCCCCTTCGCATCATTGGAGAACCCTACAAAGTGCAGcaAGCTCGGGAGATGGTGCAGGAGATCCTGAGGGAAAGGGATCATCCTGGGTTCGGAGAGAGAAACGACTACGGCTCTCGTAtgggcggcggcggcggcggaggaggaggaggaatagagGTACCTGTTCCCCGTCACTCTGTGGGCGTCGTGATTGGCCGAAACGGAGAGATGATCAAAAAGATTCAGAATGATGCTGGAGTCAGAATACAGTTCAAACCAGACGACGGAAACGGACCTGATAAGATCGCTCACATCATGGGTCCTCCTGACCGCTGCGAGCACGCCGCCAGCATCATCAACGACCTGCTACAGAGCATCCGCGTCCgagaggagggaggagggGGACCCCCTGGTCCTCCTGGCACAGGCATGCCTCCAGGTGGGCGTGGTCGAGGGCGTGGCCCAGGTAACTGGGGTCCTCCAGGCGGCGAGATGACCTTTTCTATCCCCGCTCACAAATGTGGCCTCGTGATTGGTCGGGGAGGTGAGAACGTGAAGGCGATTAACCAGCAGACTGGAGCGTTCGTGGAGATCTCGCGCCAACCGCCACCCAACGGAGACCCCAACTTCAAACTGTTCACCATCCGGGGGTCACCGCAACAGATAGACCACGCCAAGCAGCTCATCGAGGACAAGATTGAGggTCCTCTGTGTCCTGTAGGTCCCGGTCCTGGTGGTCCTGGTCCAGCTGGTCCAATGGGACCCTACAACCCAAATCCATATCAGCCGGGACCCCCAGGAGCCCCTCCACATGGTGGTCCTCCAGGTGCACATCAGTACCCTCCTCAGGGCTGGGGGAACACCTATCAGCAGTGGCAGCCGCCCGCGCCCCATGACCCCAgtaAGGCAGCAGCAGATCACAGTGCGGCCTGGGCAGCGTACTACGCGCAGTACTACCAGCAGCCTGCGGGCGGCGCCATGCCCGGCCAGACGCCCAGCGGACAGCCGGCCGCCCCGGCCCCCGCCGACCAGAGCCAAGCAGCCCAGGGTGCGGGTCAGCCCGACTACACCAAAGCCTGGGAGGAGTACTACAAGAAGATGGCTCAACAGGGCGGTGGCGCTGCTCCAGCAGCAGGGGGCACTCCGGCGGcggcgggagctgcaggaggacaGACTGATTATAGCGCCGCCTGGGCGGAGTATTACAGACAACACGCTGCTTATTACGGCCAAACCCCACAGACACCCGGCCAGCCTACAGCTGCTCCACAGGGCCAGCAGgcacaGTGAAGCTCTGAACTCTGACAGCCCCTCGGCTCACTGGTCCTCCCACTCGATCACTCGTCCTCCATGATTTCCACTGCAGCCCACCGGctcttcccttttttttattttcaccttttttccCTCCCTGCCCttcctcctttttctttttttttgtatctcgTCGTCTTCGTCTTGTTCCAGGTGACACAAATGAACAAACGGAAGCCTTTCTTAACccgctcctcctcttcctcacctcgtcgttttcgtttttttttttttgtttctgctgaAATGgactaaagaaaaaacaaacaagcgtAGCTgactcttcctcactctcctcctcctcctcctcctcctcctcctgacaGAGTAAATGATTTGATTCTGAAACCGTCGCCAGGAAAACTAAAGGGAAATGCGTCTCATCACCGGCTAACCTCCACCATCTCCATCCTCCTGCGTAGATCTTACGTCACACATGGACTTGCACTTCAGTTCGTCTCTTTcgcttcttcttctcttcttaacgtcttccttctttttttttttttaatgaataaaatattgggAAAGAACgtttgggtggggggggggggggtttgagGGTGGTCTGTTAAACATCCAGGTGTTCTTACTGCGTTTAATACGTGTCCAGCGACTGTGTTCTtctcttaatttgtttctttattttattacttttgtttcccctttttagacttttaatttgttttaaaattaagttcTCTAGTTGAGTTGAAACATTCCCAGTGTCTTCTTCATTCTGAGCTTTTACTGTctcgtgtgtgagtgtgtgtgtggtcctcCTGAAGTGTGAATGAGGTACTGATTAAATGTATGTGATCTTCCTAACGAATTAccgccctgtttttttttttttttttctcttcccgACTTTAAAAAGCCCCGatgtttgtttatataaatatatattgaaggctttttttttttttttactttattgctcGTTTTTAAAGAACTTCACAATAAAAGGAGATATGCAGACCGTTTTTCTTTCTGTCGTTGCTCACTTTGCTACTGAGTCAGCAGAGTGTGAACTACTTTTAGTTTCTAGGAGCTCATGACGTGGGGTGTAATTACCATATAATGTGATTTACAACATTTTCACTAAAACTGTCATCAGGTTCAGCGAAACCCCCCTCCCTGTGTAACttcgttttttctttctgtaacatgtttcaataaaatccaaaaatgaa

Function

symbol description
khsrp Enables mRNA 3'-UTR AU-rich region binding activity. Predicted to be involved in regulation of gene expression. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in cytoplasm and nucleus. Orthologous to human KHSRP (KH-type splicing regulatory protein).

NR:

description
PREDICTED: far upstream element-binding protein 2 isoform X1

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG:

id description
K13210 FUBP; far upstream element-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674492.1 True 3343 mRNA 0.53 18 2369956 2389979
XM_022674493.1 False 3337 mRNA 0.53 18 2369956 2389979

Neighbor

gene id symbol gene type direction distance location
vps54 vps54,LOC107709616 coding upstream 41694 2308299 ~ 2328262 (+)
LOC103028349 NA coding upstream 139933 2222873 ~ 2230023 (+)
LOC103028654 rab1a,LOC108436370,LOC105021598,LOC107676578,LOC107666439,LOC106585917 coding upstream 157147 2205433 ~ 2212809 (+)
cenpm cenpm coding upstream 231750 2131980 ~ 2138206 (+)
LOC103037292 zgc:158803,LOC108411937,LOC108258445,LOC107700834,LOC107598467,LOC107709610,LOC107747154 coding upstream 239309 2117126 ~ 2130647 (+)
LOC103025604 LOC108436360,LOC107598482,LOC107700849,LOC107747162 coding downstream 11575 2401554 ~ 2415821 (+)
LOC103022670 pgam1,LOC108436383,LOC108258456,LOC107729838,LOC107700858,LOC107598490 coding downstream 114506 2504485 ~ 2506380 (+)
exosc1 exosc1,LOC107700859,LOC107598491 coding downstream 118557 2508536 ~ 2518926 (+)
pkd1 pkd1 coding downstream 385179 2775158 ~ 2916200 (+)
nthl1 nthl1 coding downstream 607580 2997559 ~ 3004262 (+)
G100202 NA non-coding upstream 13920 2355327 ~ 2356036 (+)
G100199 NA non-coding upstream 24287 2345033 ~ 2345669 (+)
G100194 NA non-coding upstream 59853 2309716 ~ 2310103 (+)
G100177 NA non-coding upstream 106470 2261858 ~ 2263486 (+)
G100174 NA non-coding upstream 108721 2260659 ~ 2261235 (+)
G100205 NA non-coding downstream 42176 2432155 ~ 2435667 (+)
G100216 NA non-coding downstream 100820 2490799 ~ 2493218 (+)
G100221 NA non-coding downstream 135578 2525557 ~ 2537407 (+)
G100237 NA non-coding downstream 193542 2583521 ~ 2584324 (+)
G100240 NA non-coding downstream 237707 2627686 ~ 2703276 (+)
LOC103026535 slc25a23a,LOC103026535,LOC107594260,LOC107703801,LOC107747161,LOC108258471 other upstream 1392 2343619 ~ 2368564 (+)
c12h19orf53 LOC103027500 other upstream 33624 2333607 ~ 2336332 (+)
LOC103031088 NA other upstream 318098 2040094 ~ 2051858 (+)
LOC103031617 NA other upstream 331214 2032895 ~ 2038742 (+)
LOC103038569 NA other upstream 353693 2012029 ~ 2016263 (+)
avpi1 NA other downstream 61422 2451401 ~ 2463385 (+)
LOC111193601 NA other downstream 103782 2493761 ~ 2500431 (+)
LOC111193505 NA other downstream 220538 2610517 ~ 2625505 (+)
tekt4 LOC108436369 other downstream 252108 2642087 ~ 2650150 (+)
G100300 NA other downstream 654648 3044627 ~ 3046637 (+)

Expression


Co-expression Network