LOC103025604 (LOC108436360,LOC107598482,LOC107700849,LOC107747162)


Basic Information

Item Value
gene id LOC103025604
gene name LOC108436360,LOC107598482,LOC107700849,LOC107747162
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 2401554 ~ 2415821 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674495.1
GCTGTGAGGTTGTGTAAGGTGGAATCCGCGGTATATAAACTGAATTTACAGCTGAATTTACAGCAGCTGCAGACTCAACCTGCTGTTTAAACAACCCGGTAAAGATGTGGGTCTTCTGGACGTTTCTCCTCTATCTAAGTCTCTCCGGAGTTCACTCCATGTTCTCTGAGGTCACAGATTCGGTTCTTCCTCCTCACGCTCTTCATAACCCCACTCAGAGGAATTATGGGATGGCAGTGACGGATGTGGATGGCGATGGGGATCTGGAGGTGGTGGTGGCAGGGTACAGCGGGTCGAACCTGATTCTGAAGTATGATCGTGATCAGAAGAGGCTGGTAAATATCGCAGTGAATGATCGTAACTCTCCGTACTACAACCTGCGGGACCCGGAGGGGAACGCTATCGGAGTGACGGCGTGTGACGTGGACGGAGACGGACGAGAGGAGATCTACTTCCTCAACACCAACAACGCTTTCTCAGgtcagGCCTCGTACTCCGATAAGCTGTTTAAGTTCCGTAACGGCCGATTCGAGGATCTGCTGAGTGATGACATCAACGTGCGGAGGGGAGTGGCCAAGCGCATGGCAGGACGCTCTGTAGCCTGTGTGGATAGAAAGGGAACTGGGCGGTACTCTATCTACGTGTCGAATTACGCTCGGGGAAACGTGGGGGCTCACGCTCTGATCGAGATGGATGAATCTGCCAGTGATGTTACTAAAGGCATCATCGCTCTGTCTGACGTCGCCTCTCAGGCCAGAGTCAACAAGTACACAGGTGGGCGTGGCGTAGTGGTTGGTCCAATTCTTAACGACGCTCGCTCTGATATCTTCTGCGACAATGAAAACGGACCCAACTTCCTGTTCCGTAACAACGGTGACGGCACCTTCACCGACATGGCAGCTCAAGCAGGTGTGGAGGACAGATATCAGCATGGCAGGGGCGTGGCTCTGGCTGATTTTAATGGAGATGGGAAGATTGACATTGTCTATGGAAACTGGAATGGCCCCCACCGTCTCTACATGCAGACTGACCAGAAGACCTTTAAGaaCATTGCAACAAAGTCCTTCTCTGTCTCGTCTCCTGTCCGCACTGTCATCGCTGCCGACTTCGATAACGACCTGCAGCTGGAGGTTTTCTTCAACAACATCGCTTACAGAGGAAACGCCCCCAACAAGATCTTCAGagTCATGAGGAGGGAGAGCGCTGATCCCACCATCACTGAGCTAAACATCGGCGACGCCTCAGAGCCTGAGGGCCGGGGAACAGGAGCGACTGTGGTGGATTTTGATGGTGATGGATATCTGGATCTACTGGTTGCTCATGGGGAGAGCGCCTCCCAGCCCATCTCTGTCTACAAAGTCAAACAGAGCTCCGGTAATAACTGGCTGCGGGTGATGCCTCGCACTCGTTACGGAGCGTTCGCTCGCGGTGCCAAGGTGGTGATCCACACTAAACAGAGCGGCGTTCACACCCGCATCATCGACGGAGGATCTGGATACCTGTGTGAGATGGAACCAGTGGCTCACTTTGGACTAGGATCTGATCAGGCCACCAAGATTGAAGTCTATTGGCCGGATGGCCGCTCTCTGACCCGCCCCGTCTCGCCAACTGATATGAACACAGTGATGGAGATCACATATCCTGGAGCTTGAGTGTTTATCAGTTATCAGCTCACTCTCTttactttctctgttttttttacgcTTTCGCCATCATGCCTTTAAAGTGCATCAATATTAACAAAAATGCAGACCAGCGCTGTGAAGGGTAGAGTAAAGGGAAAGAACACGAGAAAGAAGGAAAGTGGCTTTAAATCCAGTTTTGAAACTCCAGTCATGTTTGtatttaatttgcttttttaactGATGTTTCTTGATTCTATATAAGCTAACATGAACTGTCTGTTAACTTcattttcttaataaaaaataaattaataaagccTGGGGTATCTATTAGAATTAA

Function

NR:

description
PREDICTED: cartilage acidic protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674495.1 True 1965 mRNA 0.50 12 2401554 2415821

Neighbor

gene id symbol gene type direction distance location
khsrp khsrp coding upstream 11575 2369956 ~ 2389979 (+)
vps54 vps54,LOC107709616 coding upstream 73292 2308299 ~ 2328262 (+)
LOC103028349 NA coding upstream 171531 2222873 ~ 2230023 (+)
LOC103028654 rab1a,LOC108436370,LOC105021598,LOC107676578,LOC107666439,LOC106585917 coding upstream 188745 2205433 ~ 2212809 (+)
cenpm cenpm coding upstream 263348 2131980 ~ 2138206 (+)
LOC103022670 pgam1,LOC108436383,LOC108258456,LOC107729838,LOC107700858,LOC107598490 coding downstream 88664 2504485 ~ 2506380 (+)
exosc1 exosc1,LOC107700859,LOC107598491 coding downstream 92715 2508536 ~ 2518926 (+)
pkd1 pkd1 coding downstream 359337 2775158 ~ 2916200 (+)
nthl1 nthl1 coding downstream 581738 2997559 ~ 3004262 (+)
slc9a3r2 slc9a3r2 coding downstream 593040 3008861 ~ 3031715 (+)
G100202 NA non-coding upstream 45518 2355327 ~ 2356036 (+)
G100199 NA non-coding upstream 55885 2345033 ~ 2345669 (+)
G100194 NA non-coding upstream 91451 2309716 ~ 2310103 (+)
G100177 NA non-coding upstream 138068 2261858 ~ 2263486 (+)
G100174 NA non-coding upstream 140319 2260659 ~ 2261235 (+)
G100205 NA non-coding downstream 16334 2432155 ~ 2435667 (+)
G100216 NA non-coding downstream 74978 2490799 ~ 2493218 (+)
G100221 NA non-coding downstream 109736 2525557 ~ 2537407 (+)
G100237 NA non-coding downstream 167700 2583521 ~ 2584324 (+)
G100240 NA non-coding downstream 211865 2627686 ~ 2703276 (+)
LOC103026535 slc25a23a,LOC103026535,LOC107594260,LOC107703801,LOC107747161,LOC108258471 other upstream 32990 2343619 ~ 2368564 (+)
c12h19orf53 LOC103027500 other upstream 65222 2333607 ~ 2336332 (+)
LOC103031088 NA other upstream 349696 2040094 ~ 2051858 (+)
LOC103031617 NA other upstream 362812 2032895 ~ 2038742 (+)
LOC103038569 NA other upstream 385291 2012029 ~ 2016263 (+)
avpi1 NA other downstream 35580 2451401 ~ 2463385 (+)
LOC111193601 NA other downstream 77940 2493761 ~ 2500431 (+)
LOC111193505 NA other downstream 194696 2610517 ~ 2625505 (+)
tekt4 LOC108436369 other downstream 226266 2642087 ~ 2650150 (+)
G100300 NA other downstream 628806 3044627 ~ 3046637 (+)

Expression


Co-expression Network