avpi1


Basic Information

Item Value
gene id avpi1
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 2451401 ~ 2463385 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674497.1
tcacgCATGATCTGTTGTCACCGGTGAAGCAGAGAGGCTTTGGTCGCGCGAATCTCGCTACGTTTAGCGGTTTAGAGGAGAATAGAGGCGTTTATCGATGAAACCGAGGAGTTAGAGAGGATTATAATCCGTGTGGAGGACGGGAAGAGCTGCTGTAGATGGAGGAAGTGGCAGCTGCCCCCCCGGCCCTGCCCGGCCCGTCCCAGCCCACGTTCTGCCGGCCCGCGGCCTCCGAGCGCCGCAGCCGCAAGTCTGGCTCCGCCAACATCTTCCAGGGCGTGAACCTGCGCCAGCTGCGGCGCCTGTTCCGGTCAGCCGGGGAACCGGACGCCGAGCAGCGAGCGCGAATGGTGTGGGGCGACTGGACAGCGGGGGCAGCTGAGGGGGAGGACGGCGGGCAGGACGAAGAGGAGGGGGAAGATGAAGATAGGCTGGCGCAGGCACTGGTGGGATTGAGGGTCCGAGCCAGAAACCGCAGCGGAATCCGGGCAGAACCTCATCGCAGCGACGGCGTCTCCGCCACCAGAGGGGTTCGGGCGTTTGGACACTccagATTTAGTGAGCGGTCTCCAGGACAGTCGTCTGAAGCTGCCGCTGATGAAGATGATGCTGCCGCTGCAGGAGCCTGTGGTGGGCAGGATCCCGTCACCGCTGGGTCATGTGACTCAGGGGACGTCCTGTATGAAGAAGAGGAGGTTCGAGGATCTTGGAGTCGGAGTGGTGCTGTGGAGAAGGATCCAGAACGCTACCTCCACCGTATACGGCACTGACGGAGGAGCCGGAACACTGCGGGATTATCagagagaccgagagagagagagcgggattAGACAATAATCTGATAACCAACCCTGGTTGGGTCTGCCAGGCCACAGCAGGACATGCTCACTAAATATACCCTGAGTGGCcagtttattggaaacacctaccctgtATCTACACTctactctggccactttattagaaacatcttcTATCTGAGCGTAGTCCACCTAATATGCGTCTCCAAAAGTTGGGCTACAGTCATTTACTGTACCTACAGTTAGTAGGTAGTCCAGGTGAGAGACACTGAttctgaaatctgatttattgTTGAGATTTTATGCTTGGATGTGAGACAAAACACTTCAAAAGGTTGTTTGAGACAAACTTAAGGAAGTAGTCTTAGACAAATAACATGAAAAAGTGGCTTGTCTGAGACAAACCACTTCCAGGGGTGGTCTGAgacaaaccacttcaggaggtggtcttaGACAAACCACATGAGAGGGTGTTCTGAGACTAACTACTAGAGGAGGTGGTttgtctgagaaaaaaacaacttgAGAGGGTGGTCTTAGACAAACCACTTGAAAAGGTGGTCTGTCTGAgacaaaccacttcaggaggtggtcttaGACAAACCACATGAGAGGGTGTTCTGAGACTAACTACTAGAGGAGGTGGTttgtctgagaaaaaaacaacttgAGAGGGTGGTCTTAGACAAACCACTTGAAAAGGTGGTCTGTCTGAGACAAACCACTTAAGAAGGTGGTCTTAGACAAACCAATTGAGAAGGTGGTCTGTCTGAGACAAACCACTTGAGAAGATGGTCTGTCTGAGACAAACCACTTGAGAAGGTGGTCTGTCTGAGACAAACCACTTGAGACGGTGGTCTGTCTGAGACAAACCACTTAAGAAGATGGTCTGTCTGAGACAAACCACTTGAGAAGGTGGTCTGTCTGAGACAAACCACTTGAGAAGGTGGTCTGTTTGAGACAAACCACTTAAGAAGATGGTCTGTCTGAGACAAACCACTTAAGAAGGTGGTCTGTCTGAGACACATTACTTGAGGAGGTGGTCTTAGACAAACCAATTGAGAACATAGTCTGAGACAAACCAATTGAGAACATAGTCTGAGAAAAAACACTTGAGAAGGTGGTCTGTCTGAGACAAACCACTTGAGAAGGTGGTCTGTCTGAGACAAACTACTTGAGGAGGTGGTTTGAGACAAACCACATggggaggtggtctgagactaACTAATTCAGGAGATCGTCTGAGACTTACCGATtaaggaggtggtctgagattaGACGCATTTAAAACCAATACAAATCTCAACACTCAAACCACATCAGGAGTGATCGAGATTAGACAATAATCTGATATCCCCTTGGGATTGGATATTGGGTCTGCCAGGGCACAGCAGGACATACTCACTAAAAATACCCATAGTGGCCAGTTTATTGTAAACATTTGCCTGAGTGTAGTCCACCTAACATGCATATCTAAAAGTTGGGCTACAGtcagttactgtactgtatctATTAAAGTGCAAGGATAGGTAGAGCAGCACAGGAAGTAACGTTAAAAACCATGGACCACACGTTTCCTGAGAAGCTAACGCTAATCCTACCAAAATAGCTGGATACATCTCTACTGGAAGCTATGGAAACCTTCTGGGACACTATACTGGAGTGGCACTACAGAGCTAGCGAATGCTCACCCAACCCatgttaaaacactttttcttatGTTATATAGATACTTAGATTAGCTGCTCTGAGATCTGATTCTTCTCATGTTTACGGTAGTTGTACGCACAGAAACAATTGCcccaattaaaacaaaaatgcaaatgtGGCTAACAGTGATATCAGCAGGACATGAAAGCTAGCAGTTAGATTTGCTTTTCAAACAGAGACAAATATTACTCTTGTTAGCATCAATTCACTAAGAAACTTAAGTTAGTATACCTTTTTAgcttttcttaacttttattcTCTGAGAAACTGGACCTGAAAACTTCAGTTCACTTAAAAACAGAAGTTAGCATTGTCTTGGGGAAATACATTCATTAAGAAACTAAAATTAGCATTTTGTTATTGCCGCCTCACTACAAAACACAAGTTAGCATGTTATTTTATGCTTCCATTTACTGAAACTACAATGCAACATTACTTTTTAAGCTTCCATTCTTGAAAAACCGAGTTAGCATTTTCTTGTTAGCTTTCATTCACTGATAAACTAGCATAGGCAAGTTTGCATGACTAGCTTGGCTTGATCACTTATCTTCAGTTCACTTAAAAACAGAAGTTAGCATTGTCTTGgggaaaataaagtaattaagaaACTGAAATTAGCATTTTGTTAGCTCTGACtcactaaaaaaacaatttagcaTGTTATTTTATGCTTCCATTTACTGAAAGACTACAATGCAACATTACTTTTTAAGCTTCCATTCTTGAAAAACAGAGTTAGCATGTTCTTGTTAGCTTTATTTCACTGAGAAACTAGCATACAGGCAAGtttacattactttaacttGGCAAACTTGAAGTGAACTTATCTTCACTTCACATAAAAACAGAAGTTAGCATTGTCTTGgggaaaatacagtaattaagaAACTGAAATGAGCATTTTGTTAGCTCTGACTCACTAAGAAACACAAGTTTACATTGTCTTGGGGAAATACATTCATTGAGAAACTGAAATTAGCATTTTGTTAGCTCCAactcactaaaaaaaacaatttagcaTGTTATTTTATGCTTCCATTTACTGAAACTACAATGCAACATTACTTTATAAGCTTCCATACTTGGAAAACAGAGGTAGCATTTTCTTGTTAGCTTTATTTCACTGAGAAACTAGCATACACAGGCAAGTTTACATGACTTTAACTGTGCAAACTTGAAGTGAACTTATCTTCACTTCACATAAAAACAGAAGTTAGCCTTGTCTTGGGGAAATATGTTCATTAAGAAACTGAAATTAACAATTTGTTAGTTCCCACTCACTAAGAAACAAAAGTTagcattatattttattcttccaTTAACTGAGAAACTTTGAGGAAATGTAGCTCCTTTGTAACTCTTCCACAGAAATTAGTTAGCATGTCTTTTAGCATTCACTGAAAAAACTGGAATTTAACATTTCTTATAttccttttagtaaaaaaaaaaaacgaattagtCTTTGTTAGAATTCATTGGCTGACAAAGCTGGAATTAATTTCTTAGCTTCAACTCAATAAGATAAACATAGTTAGCATTATTTGTTATTCTCTATTCACTAAGAAAAAGAGCTTAGCTAGCTTCTGTTTACTGAAAAACTAGCAGTTAGCATTTCTTTAGCTTCCGTCCTCTGAGAAACTGCTATGCAACATTTGTTAGCATCTTTTCAGTGAGAAAAATAGTTAGGTTAGCATTCTTTTAGCTTTCGTTCAgtgacaaaaaagtaaaaaaaaaaaatatttaacttatACTGATATAGATGTTACCATATATTTACAAAGTTTACAGTTCTTGTTGACTTGCGTTAACTGACAAAACTGGTATTAGCAAAACCTGTTAGCATTCACtcactaaaaaaacacaagatacAAGGCTGTACTCCTTTTAAAGCTTCCTTTTCATGAGGAACGCACATTAGCGTATCTTCTTTATAGCTTCCATTTAGTAAGAAACTGGAATTATTCACTAAAAAACACAAGTTAGTGTGATTTAAAGGCTTCCACTCACTAAAAACCAGGAATTTAGCTTCCATTCAGTAAGAAAAATCGAGTTAGCATGTCTTGTAAAGGGGCTATTCACTGAAAAACTAGAATTAATCTTAAATGTTAGCATCCATTTGTTGATTAATGGGAGTTATAATTTTCCTGTTAGCATTCTTTCACTTAAAAATAGGTTTTGGCTTCTCTTCTCATCTGTTTAAAGATAAActgaacttaaaatgtatttgttcgCTTCATTTCACTAAGAAAAAAGAGCTATCGTTTCTTAGTTAGCTTCTGTTGACTGAGAAATTAGCATAGGCAAGTTAGcatttctttagcttccatttaCAAGGTATGTTTCCACCCAAAGATTTAGAAACATGTATTTTATGAGTGAAAATACTGCATTTGCACTTTAATTTAGTGCCATGTGACAATGTGGgttctatttatctattaataaatatatagtacaccttttttttatattagcacCTTAGAAAGTCAGTGGAAACATTAGCTATAGCTTGTTCTTGCTGAATTCTACTCATTTATTTCCTTTAATCCGCTGAT
>XR_002650564.1
tcacgCATGATCTGTTGTCACCGGTGAAGCAGAGAGGCTTTGGTCGCGCGAATCTCGCTACGTTTAGCGGTTTAGAGGAGAATAGAGGCGTTTATCGATGAAACCGAGGAGTTAGAGAGGATTATAATCCGTGTGGAGGACGGGAAGAGCTGCTGTAGATGGAGGAAGTGGCAGCTGCCCCCCCGGCCCTGCCCGGCCCGTCCCAGCCCACGTTCTGCCGGCCCGCGGCCTCCGAGCGCCGCAGCCGCAAGTCTGGCTCCGCCAACATCTTCCAGGGCGTGAACCTGCGCCAGCTGCGGCGCCTGTTCCGGTCAGCCGGGGAACCGGACGCCGAGCAGCGAGCGCGAATGGTGTGGGGCGACTGGACAGCGGGGGCAGCTGAGGGGGAGGACGGCGGGCAGGACGAAGAGGAGGGGGAAGATGAAGATAGGCTGGCGCAGGCACTGGTGGGATTGAGGGTCCGAGCCAGAAACCGCAGCGGAATCCGGGCAGAACCTCATCGCAGCGACGGCGTCTCCGCCACCAGAGGGGTTCGGGCGTTTGGACACTccagATTTAGTGAGCGGTCTCCAGGACAGTCGTCTGAAGCTGCCGCTGATGAAGATGATGCTGCCGCTGCAGGAGCCTGTGGTGGGCAGGATCCCGTCACCGCTGGGTCATGTGACTCAGGGGACGTCCTGTATGAAGAAGAGGAGGTTCGAGGATCTTGGAGTCGGAGTGGTGCTGTGGAGAAGGATCCAGAACGCTACCTCCACCGTATACGGCACTGACGGAGGAGCCGGAACACTGCGGGATTATCagagagaccgagagagagagagcgggattAGACAATAATCTGATAACCAACCCTGGTTGGGTCTGCCAGGCCACAGCAGGACATGCTCACTAAATATACCCTGAGTGGCcagtttattggaaacacctaccctgtATCTACACTctactctggccactttattagaaacatcttcTATCTGAGCGTAGTCCACCTAATATGCGTCTCCAAAAGTTGGGCTACAGTCATTTACTGTACCTACAGTTAGTAGGTAGTCCAGGTGAGAGACACTGAttctgaaatctgatttattgTTGAGATTTTATGCTTGGATGTGAGACAAAACACTTCAAAAGGTTGTTTGAGACAAACTTAAGGAAGTAGTCTTAGACAAATAACATGAAAAAGTGGCTTGTCTGAGACAAACCACTTCCAGGGGTGGTCTGAgacaaaccacttcaggaggtggtcttaGACAAACCACATGAGAGGGTGTTCTGAGACTAACTACTAGAGGAGGTGGTttgtctgagaaaaaaacaacttgAGAGGGTGGTCTTAGACAAACCACTTGAAAAGGTGGTCTGTCTGAgacaaaccacttcaggaggtggtcttaGACAAACCACATGAGAGGGTGTTCTGAGACTAACTACTAGAGGAGGTGGTttgtctgagaaaaaaacaacttgAGAGGGTGGTCTTAGACAAACCACTTGAAAAGGTGGTCTGTCTGAGACAAACCACTTAAGAAGGTGGTCTGTCTGAGACAAACCACTTGAGAAGGTGGTCTGTCTGAGACAAACTACTTGAGGAGGTGGTTTGAGACAAACCACATggggaggtggtctgagactaACTAATTCAGGAGATCGTCTGAGACTTACCGATtaaggaggtggtctgagattaGACGCATTTAAAACCAATACAAATCTCAACACTCAAACCACATCAGGAGTGATCGAGATTAGACAATAATCTGATATCCCCTTGGGATTGGATATTGGGTCTGCCAGGGCACAGCAGGACATACTCACTAAAAATACCCATAGTGGCCAGTTTATTGTAAACATTTGCCTGAGTGTAGTCCACCTAACATGCATATCTAAAAGTTGGGCTACAGtcagttactgtactgtatctATTAAAGTGCAAGGATAGGTAGAGCAGCACAGGAAGTAACGTTAAAAACCATGGACCACACGTTTCCTGAGAAGCTAACGCTAATCCTACCAAAATAGCTGGATACATCTCTACTGGAAGCTATGGAAACCTTCTGGGACACTATACTGGAGTGGCACTACAGAGCTAGCGAATGCTCACCCAACCCatgttaaaacactttttcttatGTTATATAGATACTTAGATTAGCTGCTCTGAGATCTGATTCTTCTCATGTTTACGGTAGTTGTACGCACAGAAACAATTGCcccaattaaaacaaaaatgcaaatgtGGCTAACAGTGATATCAGCAGGACATGAAAGCTAGCAGTTAGATTTGCTTTTCAAACAGAGACAAATATTACTCTTGTTAGCATCAATTCACTAAGAAACTTAAGTTAGTATACCTTTTTAgcttttcttaacttttattcTCTGAGAAACTGGACCTGAAAACTTCAGTTCACTTAAAAACAGAAGTTAGCATTGTCTTGGGGAAATACATTCATTAAGAAACTAAAATTAGCATTTTGTTATTGCCGCCTCACTACAAAACACAAGTTAGCATGTTATTTTATGCTTCCATTTACTGAAACTACAATGCAACATTACTTTTTAAGCTTCCATTCTTGAAAAACCGAGTTAGCATTTTCTTGTTAGCTTTCATTCACTGATAAACTAGCATAGGCAAGTTTGCATGACTAGCTTGGCTTGATCACTTATCTTCAGTTCACTTAAAAACAGAAGTTAGCATTGTCTTGgggaaaataaagtaattaagaaACTGAAATTAGCATTTTGTTAGCTCTGACtcactaaaaaaacaatttagcaTGTTATTTTATGCTTCCATTTACTGAAAGACTACAATGCAACATTACTTTTTAAGCTTCCATTCTTGAAAAACAGAGTTAGCATGTTCTTGTTAGCTTTATTTCACTGAGAAACTAGCATACAGGCAAGtttacattactttaacttGGCAAACTTGAAGTGAACTTATCTTCACTTCACATAAAAACAGAAGTTAGCATTGTCTTGgggaaaatacagtaattaagaAACTGAAATGAGCATTTTGTTAGCTCTGACTCACTAAGAAACACAAGTTTACATTGTCTTGGGGAAATACATTCATTGAGAAACTGAAATTAGCATTTTGTTAGCTCCAactcactaaaaaaaacaatttagcaTGTTATTTTATGCTTCCATTTACTGAAACTACAATGCAACATTACTTTATAAGCTTCCATACTTGGAAAACAGAGGTAGCATTTTCTTGTTAGCTTTATTTCACTGAGAAACTAGCATACACAGGCAAGTTTACATGACTTTAACTGTGCAAACTTGAAGTGAACTTATCTTCACTTCACATAAAAACAGAAGTTAGCCTTGTCTTGGGGAAATATGTTCATTAAGAAACTGAAATTAACAATTTGTTAGTTCCCACTCACTAAGAAACAAAAGTTagcattatattttattcttccaTTAACTGAGAAACTTTGAGGAAATGTAGCTCCTTTGTAACTCTTCCACAGAAATTAGTTAGCATGTCTTTTAGCATTCACTGAAAAAACTGGAATTTAACATTTCTTATAttccttttagtaaaaaaaaaaaacgaattagtCTTTGTTAGAATTCATTGGCTGACAAAGCTGGAATTAATTTCTTAGCTTCAACTCAATAAGATAAACATAGTTAGCATTATTTGTTATTCTCTATTCACTAAGAAAAAGAGCTTAGCTAGCTTCTGTTTACTGAAAAACTAGCAGTTAGCATTTCTTTAGCTTCCGTCCTCTGAGAAACTGCTATGCAACATTTGTTAGCATCTTTTCAGTGAGAAAAATAGTTAGGTTAGCATTCTTTTAGCTTTCGTTCAgtgacaaaaaagtaaaaaaaaaaaatatttaacttatACTGATATAGATGTTACCATATATTTACAAAGTTTACAGTTCTTGTTGACTTGCGTTAACTGACAAAACTGGTATTAGCAAAACCTGTTAGCATTCACtcactaaaaaaacacaagatacAAGGCTGTACTCCTTTTAAAGCTTCCTTTTCATGAGGAACGCACATTAGCGTATCTTCTTTATAGCTTCCATTTAGTAAGAAACTGGAATTATTCACTAAAAAACACAAGTTAGTGTGATTTAAAGGCTTCCACTCACTAAAAACCAGGAATTTAGCTTCCATTCAGTAAGAAAAATCGAGTTAGCATGTCTTGTAAAGGGGCTATTCACTGAAAAACTAGAATTAATCTTAAATGTTAGCATCCATTTGTTGATTAATGGGAGTTATAATTTTCCTGTTAGCATTCTTTCACTTAAAAATAGGTTTTGGCTTCTCTTCTCATCTGTTTAAAGATAAActgaacttaaaatgtatttgttcgCTTCATTTCACTAAGAAAAAAGAGCTATCGTTTCTTAGTTAGCTTCTGTTGACTGAGAAATTAGCATAGGCAAGTTAGcatttctttagcttccatttaCAAGGTATGTTTCCACCCAAAGATTTAGAAACATGTATTTTATGAGTGAAAATACTGCATTTGCACTTTAATTTAGTGCCATGTGACAATGTGGgttctatttatctattaataaatatatagtacaccttttttttatattagcacCTTAGAAAGTCAGTGGAAACATTAGCTATAGCTTGTTCTTGCTGAATTCTACTCATTTATTTCCTTTAATCCGCTGAT

Function

NR:

description
PREDICTED: uncharacterized protein LOC107730030

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674497.1 True 5065 mRNA 0.41 3 2451401 2463385
XR_002650564.1 False 4678 misc_RNA 0.40 4 2451401 2463385

Neighbor

gene id symbol gene type direction distance location
LOC103025604 LOC108436360,LOC107598482,LOC107700849,LOC107747162 coding upstream 35580 2401554 ~ 2415821 (+)
khsrp khsrp coding upstream 61422 2369956 ~ 2389979 (+)
vps54 vps54,LOC107709616 coding upstream 123139 2308299 ~ 2328262 (+)
LOC103028349 NA coding upstream 221378 2222873 ~ 2230023 (+)
LOC103028654 rab1a,LOC108436370,LOC105021598,LOC107676578,LOC107666439,LOC106585917 coding upstream 238592 2205433 ~ 2212809 (+)
LOC103022670 pgam1,LOC108436383,LOC108258456,LOC107729838,LOC107700858,LOC107598490 coding downstream 41100 2504485 ~ 2506380 (+)
exosc1 exosc1,LOC107700859,LOC107598491 coding downstream 45151 2508536 ~ 2518926 (+)
pkd1 pkd1 coding downstream 311773 2775158 ~ 2916200 (+)
nthl1 nthl1 coding downstream 534174 2997559 ~ 3004262 (+)
slc9a3r2 slc9a3r2 coding downstream 545476 3008861 ~ 3031715 (+)
G100205 NA non-coding upstream 15734 2432155 ~ 2435667 (+)
G100202 NA non-coding upstream 95365 2355327 ~ 2356036 (+)
G100199 NA non-coding upstream 105732 2345033 ~ 2345669 (+)
G100194 NA non-coding upstream 141298 2309716 ~ 2310103 (+)
G100177 NA non-coding upstream 187915 2261858 ~ 2263486 (+)
G100216 NA non-coding downstream 27414 2490799 ~ 2493218 (+)
G100221 NA non-coding downstream 62172 2525557 ~ 2537407 (+)
G100237 NA non-coding downstream 120136 2583521 ~ 2584324 (+)
G100240 NA non-coding downstream 164301 2627686 ~ 2703276 (+)
G100245 NA non-coding downstream 166427 2629812 ~ 2633083 (+)
LOC103026535 slc25a23a,LOC103026535,LOC107594260,LOC107703801,LOC107747161,LOC108258471 other upstream 82837 2343619 ~ 2368564 (+)
c12h19orf53 LOC103027500 other upstream 115069 2333607 ~ 2336332 (+)
LOC103031088 NA other upstream 399543 2040094 ~ 2051858 (+)
LOC103031617 NA other upstream 412659 2032895 ~ 2038742 (+)
LOC103038569 NA other upstream 435138 2012029 ~ 2016263 (+)
LOC111193601 NA other downstream 30376 2493761 ~ 2500431 (+)
LOC111193505 NA other downstream 147132 2610517 ~ 2625505 (+)
tekt4 LOC108436369 other downstream 178702 2642087 ~ 2650150 (+)
G100300 NA other downstream 581242 3044627 ~ 3046637 (+)
LOC103046164 NA other downstream 625268 3088653 ~ 3117263 (+)

Expression


Co-expression Network