LOC111193506


Basic Information

Item Value
gene id LOC111193506
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 3164646 ~ 3170094 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674521.1
TGTCGACCTGGAAGGAGACATGGTCTCTTCTCACCACTACTTATGTCTTGGAGGTTGAACTTTGTGCTGTGTGGGACTGATCAAGCACAGAAAGCCTCTATATCAGATCTCATACTGGGCCAGAGCCAGCGCAGGCCCAAGCCCAGTCTGGAGCCCAGCTTCATATGTGTGACGAGACATGGAGTAGTGTCTGAACGCTCAGTTACCCTGGTGGAGATGCCGGCTCTTTACAACACTCAAGAGAATGATGCAAAGTGTACAGCTCTCcgctgtgtctctgtctgtgatTCTGGAGTCAGTGCTTTCCTCTTAATCATTTCTCTTGGTCTCCTCACTGATGAAAACCGAAGAGAAATtgaaaaaatccagaaaatcttCGGCTCCAGAGTCAAAGATAACCtaatagttatttttaaaatgcccAATATGGAACAGGCTGCTTTTATTAAAGGTGACACAGAACTCTGGAACTTTCTTGCTATGTGCAATTATAGACATGTAATTGTGGAAACAGAGATGGGGAAATCCTTTGAGAAAGCAGGTGAAGAGCTTCTGGCAGAAATTACAAAATTGATCGAAGCACAGCCCTATACTCTTCTCATGTTTGTGATGGCTCAGGAAGAAAGAGCCTGGTGTGAAGCGAACGCAAAGTATAAAGAAGAGCTGAGCAAACATAAGAAGGAAATTCAGGAGTTAAAGAAGCAGctaaaagcacaagGTAATGAAGAGGAAGCACAAGTTTCCAGTTGCTTAAGGATAGTATTAATTGGAAAGGCTGGAAATGGAAAGAGTGCAACAGGAAACACCATCCTGGGAAGAAAGGAATTTGCTACTGGAGCCAGTATGAATTCTGTAACAAAAATTTGCAAGAAAGGAGTTGGTGAAGTACTGGGAAGGACAGTTGCTGTAGTTGACACTCCAGGTCTCTATGATACCTCACTGTCAACGGTAAACATACAGGAAGAAATTGTGAAGTGCATCTTGATGTCAGCACCTGGACCTCATGCTTTCATTATAGTACTGAGTGTGGGAAGAGTCACCAAAGACGACGTGGAAACTTTAGATCTGATCAAAACTATTGGTCCAAAGGCTGCAATGTTCAGTATAGTGCTGTTCACTAGAGGAGATGACCTGGAAGATCAGACAATAAAGGAGTATGTAGAGACCTGTACCATCGAGCCAATCAAGAAACTGCTCAGAGACTGTGGCGACAGATTCATAGTATTTaataacagagaaaaacaagacCGCACCCAAGTTTGTGAGCTTCTGACACAGATTGAAATGGTGAAGACATCCAACCCATCATGTCAGTTCTTTACAAACAACATGTTCCAAGAGGCAGAACTGTCCatcaaaaagaaaatcaaggaaattcttagagaaaaagagaaggagattgAAGCTGAAAAGGAGAAACTGAAAACCAAATACAGGCAGGAGATGGAACAGATGAAGAAAAGACTGgaggaagaaaaacaaaaggctgccaaagaaaaacagcagatcAGAGAAAAGATGGAAGCTCTCAAGAAGGAGTTGGAAGAAAAAtatgaaagagagaagaaaaatgaaACAGCAGAACGAGAAATTAAACGACTGCAGGAAAGAGAATATGAGATAATGAGACAATGGCAGGAGGATATTAAAAAGATAGAGGCAGAAATCATGgctagagaggagagagagaagacagaacTCAAAAGGAAACATCATCAGGAATTGGAGGACATGAAGAAAACACATGAAGCTGAAGTCAGAAAACTGGTTGTGCAATTTAGTGAGTTCACTGATAGCAAAGAACAACTGCATGGGGAAacggaaatgtaccaaaaacaGTGTGAGCTTTTGGAACATATCCAACAATTCAATGAAAGTGAGGGTGGAGCAGATGTTGTGTTACTAAGAAGCAAAAAATGTACCATCCTTTGA

Function

GO: NA

KEGG:

id description
ko04020 Calcium signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674521.1 True 1932 mRNA 0.42 4 3164646 3170094

Neighbor

gene id symbol gene type direction distance location
LOC111193604 NA coding upstream 5112 3155218 ~ 3159534 (+)
LOC111193603 NA coding upstream 15480 3143050 ~ 3149166 (+)
slc9a3r2 slc9a3r2 coding upstream 132931 3008861 ~ 3031715 (+)
nthl1 nthl1 coding upstream 160384 2997559 ~ 3004262 (+)
pkd1 pkd1 coding upstream 248446 2775158 ~ 2916200 (+)
LOC111193605 NA coding downstream 12088 3182182 ~ 3183378 (+)
LOC111193507 NA coding downstream 13346 3183440 ~ 3184312 (+)
LOC111193606 NA coding downstream 19988 3190082 ~ 3200505 (+)
LOC107197534 NA coding downstream 32753 3202847 ~ 3209594 (+)
LOC103032260 NA coding downstream 41676 3211770 ~ 3225512 (+)
G100305 NA non-coding upstream 39066 3063953 ~ 3125580 (+)
G100288 tsc2 non-coding upstream 167230 2991418 ~ 2997416 (+)
G100282 NA non-coding upstream 191142 2918736 ~ 2973504 (+)
G100317 NA non-coding downstream 12097 3182191 ~ 3200431 (+)
G100377 nup133,LOC106564728 non-coding downstream 185484 3355578 ~ 3357876 (+)
G100387 NA non-coding downstream 220923 3391017 ~ 3394325 (+)
G100365 NA non-coding downstream 254595 3424689 ~ 3426907 (+)
G100363 btbd3,btbd3a,LOC107583195,LOC107684321,LOC107675618,LOC107594463,LOC107747408 non-coding downstream 265945 3436039 ~ 3463191 (+)
LOC103046164 NA other upstream 47383 3088653 ~ 3117263 (+)
G100300 NA other upstream 118009 3044627 ~ 3046637 (+)
tekt4 LOC108436369 other upstream 514496 2642087 ~ 2650150 (+)
LOC111193505 NA other upstream 539141 2610517 ~ 2625505 (+)
LOC111193601 NA other upstream 664215 2493761 ~ 2500431 (+)
LOC103023443 NA other downstream 56645 3226739 ~ 3229366 (+)
LOC103022119 NA other downstream 841901 4011995 ~ 4060749 (+)
G100820 akt3b,LOC108438606,LOC108259077,LOC107594289,LOC107729704,LOC107703832,LOC101071975 other downstream 1079989 4250083 ~ 4267826 (+)
atg4d atg4d other downstream 1459029 4629123 ~ 4645356 (+)
G100975 NA other downstream 1916666 5086760 ~ 5091748 (+)

Expression


Co-expression Network