Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC111193507 |
| gene name | NA |
| gene type | coding |
| species | mexican tetra (Astyanax mexicanus) |
| category of species | ornamental fish |
| Item | Value |
|---|---|
| chromosome id | NC_035908.1 |
| NCBI id | CM008311.1 |
| chromosome length | 31403898 |
| location | 3183440 ~ 3184312 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| id | name | namespace |
|---|---|---|
| GO:0030163 | protein catabolic process | biological_process |
| GO:0009057 | macromolecule catabolic process | biological_process |
| GO:0044257 | cellular protein catabolic process | biological_process |
| GO:0044265 | cellular macromolecule catabolic process | biological_process |
| GO:0051603 | proteolysis involved in cellular protein catabolic process | biological_process |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_022674522.1 | True | 873 | mRNA | 0.40 | 1 | 3183440 | 3184312 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC111193605 | NA | coding | upstream | 62 | 3182182 ~ 3183378 (+) |
| LOC111193506 | NA | coding | upstream | 13346 | 3164646 ~ 3170094 (+) |
| LOC111193604 | NA | coding | upstream | 23906 | 3155218 ~ 3159534 (+) |
| LOC111193603 | NA | coding | upstream | 34274 | 3143050 ~ 3149166 (+) |
| slc9a3r2 | slc9a3r2 | coding | upstream | 151725 | 3008861 ~ 3031715 (+) |
| LOC111193606 | NA | coding | downstream | 5770 | 3190082 ~ 3200505 (+) |
| LOC107197534 | NA | coding | downstream | 18535 | 3202847 ~ 3209594 (+) |
| LOC103032260 | NA | coding | downstream | 27458 | 3211770 ~ 3225512 (+) |
| LOC103037697 | LOC108438607 | coding | downstream | 99446 | 3283758 ~ 3289225 (+) |
| kif16b | kif16b | coding | downstream | 197568 | 3381880 ~ 3423599 (+) |
| G100305 | NA | non-coding | upstream | 57860 | 3063953 ~ 3125580 (+) |
| G100288 | tsc2 | non-coding | upstream | 186024 | 2991418 ~ 2997416 (+) |
| G100282 | NA | non-coding | upstream | 209936 | 2918736 ~ 2973504 (+) |
| G100377 | nup133,LOC106564728 | non-coding | downstream | 171266 | 3355578 ~ 3357876 (+) |
| G100387 | NA | non-coding | downstream | 206705 | 3391017 ~ 3394325 (+) |
| G100365 | NA | non-coding | downstream | 240377 | 3424689 ~ 3426907 (+) |
| G100363 | btbd3,btbd3a,LOC107583195,LOC107684321,LOC107675618,LOC107594463,LOC107747408 | non-coding | downstream | 251727 | 3436039 ~ 3463191 (+) |
| G100390 | NA | non-coding | downstream | 264851 | 3449163 ~ 3515506 (+) |
| LOC103046164 | NA | other | upstream | 66177 | 3088653 ~ 3117263 (+) |
| G100300 | NA | other | upstream | 136803 | 3044627 ~ 3046637 (+) |
| tekt4 | LOC108436369 | other | upstream | 533290 | 2642087 ~ 2650150 (+) |
| LOC111193505 | NA | other | upstream | 557935 | 2610517 ~ 2625505 (+) |
| LOC111193601 | NA | other | upstream | 683009 | 2493761 ~ 2500431 (+) |
| LOC103023443 | NA | other | downstream | 42427 | 3226739 ~ 3229366 (+) |
| LOC103022119 | NA | other | downstream | 827683 | 4011995 ~ 4060749 (+) |
| G100820 | akt3b,LOC108438606,LOC108259077,LOC107594289,LOC107729704,LOC107703832,LOC101071975 | other | downstream | 1065771 | 4250083 ~ 4267826 (+) |
| atg4d | atg4d | other | downstream | 1444811 | 4629123 ~ 4645356 (+) |
| G100975 | NA | other | downstream | 1902448 | 5086760 ~ 5091748 (+) |
