LOC107197534


Basic Information

Item Value
gene id LOC107197534
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 3202847 ~ 3209594 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674523.1
taCTTTTGATTTCAGCTCATGAGATGAAGAACAGGAGATGGCCTCCAGCAGTGATTTATTTCGACCTCGGAGAGCGCAAAGTCTTTCCCCACCTCCTTGCATGAAGTATTCCAAAAAAAGTTGGGATGGGACAACAAAAGGCTGTaaaaAGCCAGATACAGGGATTGTGAGTCTGTTCCAGAGATTTGCTGGAAGAGGTAAACAGGACAGTGAGGaATCTCAGAGGTTGAACTTGGTTCTGTGTGGAATTGATGGAGCACTTAAAGTCCTTATATCAGATCTTATACTGGGCCAGAACCAACGCAGGTCCGACCCCAGTCTGGAGCCCAGCTTAACATGTGTGAAGAGAGCTGGAGAAGTGTCTGGATGCTCAGTTACCGTGGTGAAGATGCCAGCCCTCTGCAGGATTCTTAAGGAAGATGTGAAGTGTGAAGCTCTccgctgtgtctctctctgtgattcTGGAGTCCATGCTTTCCTCTTCATCGTTCCTGTCGGTCCCCTCACTGATGCTGACAAAAGAGAAGTGGAGAAGATTGAGAAAACTTTCAGCTCCAGAGTGAAAGATAACCTAATAGTTATTTTTACCACATCTACTATGCAACCGCCTGTTAAAGATTTTATTGAACATGACACAGAAATCAGGAAGTTTCTTGCTTTGAGTGAAGATCATTATATAATAGTGGGAACAGAGATCGGGAAATCCTCCAAGCAGGCAGGTGAAAAGCTGGTAAATGAAATTATAAAGAGGATCAAAGCACAACCGTATTCTCTTTACATGTATATGATGGCTCAGGAAGAAAAAGTCAGACACGAAGTGGAGAAGAAGTATGAAGAAGAACTGAGCAAACAGCAGAAGGAAATCCAGGAGCTAAAAATGAAGCTAAAGGCAGAAGGTGATGAAGAGGAAGCAGAGGTTTCCAGTTGCTTAAGAATTGTGTTGATTGGAAAGACGGGGAATGGAAAGAGTGCAACAGGAAACACCATCCTGGGAAGAAATGAATTTGTTACTGAAACCAGTATGAATTCTGTGACAAGAGTCTGCCAGAAAGGAGTTGGTGAAGTACTAGGAAGGTCAGTTGCTGTAATTGACACTCCTGGTCTCTTTAATGCCTCAATGTCGGTGGAAGAAGTACATCAAGAAATTGTGAAGTGCATCTCAATATCAGCACCTGGACCCCACGCTTTCATCATAGTACTGAGTGTGGGAAGAGTCAGTAAGGAAGATGTGGAAATGTTAGACACAATAAAAACGCTCTTTGGTCCAAAGGCTGCAATGTTCAGTATAGTGCTGTTCACTAGAGGAGATGACCTACAAAATCAGACAATAAAGGATTACGTAGACAAATGTACCATTGAGCCCGTCAGGAAGATGCTCAGAGACTGTGGAGACAGATTCATAGCATTTAATAACAGAGAGGAAACAGACTGCACCCAAGTTTCTGAGCTTCTCACAATGATTGAAATggtgaaaaacacaaacacatcaagTCTGTACTTTACAAACAGCATGTTCGAAGAGGCAGAACTGTCCATCAAAAAGAAAACTGAGGAAATCctcaaaaagaaagagaaagagattgaaGATGAAAAGGAGAAACTGAAAATTAAATACAACCAGGAAATggaagagataaagaaaatactagaggaagaaaaacaaaaggctGATgaggaaaaacagcaactacAGAGAAATTTTAGAGACAAGATGGAAGCTCTCAAAAAAGAGTTTGAGGAAAAAGATCAAACGGAGAGAAAGAAACGGGAGATGGAAGACAAGGCCAGGTCAGAAGAAGTAAATATGCAAATGCAGCAATGGCAAAGCCGAATAACTGAGTTAGAAATAGAGAATAAAAAGCAGAGAGATGAATTTGAAAAACAGCTAAGTGAAAGAGATGTGgaggataaaaagagagaagagaaatacAAACAAGATAAAGAACACTTTCAGATTCAGCAAAATCAAGCCATAGAGGAACTAAGAAAAAGTCAAGATGAAGAATTTAAACAGAGAGGCTTGGAGGAGGATAGAAGGAGACAAAAGGAAGAGGACGAGAGAAGTGATTGGGAGAGGAGAATAAAAGAGGCAGAACATGAGAAGACAGAGATACAAGAGGACCTTAAGCGTAAACTGATGGAAtgggaagaagagaagaaaaggcaGATCATGGAACTACAGGAAGAGGATCTGCAGAGAAAGCAGAAGCATGCTGAAGAGCTAAGAGCTaaacaagaagaacaagaaagaatgagagaggcaTTTGAAAGAGACATGGAAGAAGAAAGACTttggagagaggaggagaaacgACAGTGGAgagaagaaagtgagagaaaagacagagagtATGAGGAAAAGAAATGTACAATGGAAGCACAGATGAAAGAACAGTATGAGCAGATGGAGAAAAGAAGGATGGAAGAGCAGGAGAGAAGAAAACAAGAGGATGAAGAGAGAAGAGCTGAAGAAAGAAAACGACTGCAGGAAAGAGAGGAGGACATTAAGAGACAATGGCAGGAGGACATtaagaaaagagaggaagaaatcATGGctagagaagaaaaagagaagaaggaaTGGGAGGAACTGAAAAAGAAGCATGATCAAGAAATGAAGGCcatgaaaaataaatttgaagATATGGCCAGGCAGCAGGCTGAGCAGTTAAATGAGTTCAAtgcaagtaaagaaaaacacttccAGGAGCTCATGGAGGAGCAACAGAAACGTTATGAGCTTTTGGATAATCTCTATAAACTCACAGAGGGTCAAAAAAGCAAGGAAATTAAGAAACTAAGAGCAGAACTtgacaaaataaagaataaatcaaATTGTACTATTAGTTGAGCAGTCATAGCAGTTGTAATGAATGATGCTGTAGTGAAATGATGCTGcagaaaaactattttattcatATGATGAATAAAATGCATGTATTAGGCAAGGATCCATTTGAGGATGGGtaactgtttttgtgtgtattaaatatatattcttgtatatataAAGTACAGGCCaagagtttggacacaccttctctt

Function

GO: NA

KEGG:

id description
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674523.1 True 3045 mRNA 0.40 6 3202847 3209594

Neighbor

gene id symbol gene type direction distance location
LOC111193606 NA coding upstream 2342 3190082 ~ 3200505 (+)
LOC111193507 NA coding upstream 18535 3183440 ~ 3184312 (+)
LOC111193605 NA coding upstream 19469 3182182 ~ 3183378 (+)
LOC111193506 NA coding upstream 32753 3164646 ~ 3170094 (+)
LOC111193604 NA coding upstream 43313 3155218 ~ 3159534 (+)
LOC103032260 NA coding downstream 2176 3211770 ~ 3225512 (+)
LOC103037697 LOC108438607 coding downstream 74164 3283758 ~ 3289225 (+)
kif16b kif16b coding downstream 172286 3381880 ~ 3423599 (+)
esf1 esf1,LOC107579043 coding downstream 227138 3436732 ~ 3455661 (+)
LOC103036342 jag1 coding downstream 367587 3577181 ~ 3634221 (+)
G100317 NA non-coding upstream 2416 3182191 ~ 3200431 (+)
G100305 NA non-coding upstream 77267 3063953 ~ 3125580 (+)
G100288 tsc2 non-coding upstream 205431 2991418 ~ 2997416 (+)
G100282 NA non-coding upstream 229343 2918736 ~ 2973504 (+)
G100377 nup133,LOC106564728 non-coding downstream 145984 3355578 ~ 3357876 (+)
G100387 NA non-coding downstream 181423 3391017 ~ 3394325 (+)
G100365 NA non-coding downstream 215095 3424689 ~ 3426907 (+)
G100363 btbd3,btbd3a,LOC107583195,LOC107684321,LOC107675618,LOC107594463,LOC107747408 non-coding downstream 226445 3436039 ~ 3463191 (+)
G100390 NA non-coding downstream 239569 3449163 ~ 3515506 (+)
LOC103046164 NA other upstream 85584 3088653 ~ 3117263 (+)
G100300 NA other upstream 156210 3044627 ~ 3046637 (+)
tekt4 LOC108436369 other upstream 552697 2642087 ~ 2650150 (+)
LOC111193505 NA other upstream 577342 2610517 ~ 2625505 (+)
LOC111193601 NA other upstream 702416 2493761 ~ 2500431 (+)
LOC103023443 NA other downstream 17145 3226739 ~ 3229366 (+)
LOC103022119 NA other downstream 802401 4011995 ~ 4060749 (+)
G100820 akt3b,LOC108438606,LOC108259077,LOC107594289,LOC107729704,LOC107703832,LOC101071975 other downstream 1040489 4250083 ~ 4267826 (+)
atg4d atg4d other downstream 1419529 4629123 ~ 4645356 (+)
G100975 NA other downstream 1877166 5086760 ~ 5091748 (+)

Expression


Co-expression Network