G53675


Basic Information

Item Value
gene id G53675
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 5859197 ~ 5895612 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU61132
TTAAAAAAAAAAAAATATTCTTCTCATTTATGTTCCACAGAAAAAGGAAAGTCATACAAATTTGCCATTGTTCCCAAACAGTCAGTTTTTCCCACAGGATGTTGACCAATGCAATGTAACAAATAAAGGACAACAGAAGATTTTCCGGAGGCAGCAGTGTTCATTTAGTCTGTTGCCATGGTCACAAGGTGCCCCTCCTCCTCACATGACAGCTACACTAGAGATGTTAGCGTGTCTTGAGGGCTTTGATGTATATGATGGTGAACATTGACCAGAATAAGTCCAGAGGTGAGAAGATGGAAAGGTAACCAGCAGGTGGTCCTGGGATGTCTTAATGGACAGTCATGTATGATTCATATTAGATGCCAGTGCTTGGTCCGGAGGCTGGAAATCACTTCCTATTGTGCTCCCAGAAGGCCGAACAGAGGGGATTAACTGGCTCAGGAAAGGGGTTTTTGCTGCTTTGAGGTCCAAAGCTGTTTCTTCTGTCTTTTGTCATTGTCGTCCCCCTGAGAACTTCTTGGTTCAGTCATTGTCATTTCTGCAAGCTAGCCTACAGTAGTGGACACTCTTGGGCGTCACTGTGTATCGATTGAAAATACTGTCCTTAGAGGAATTACAATATCTTGAAGTTTTGAGTTAAAAAATTTTTATTACTAATCATAAAGGATTTTTATGATTATATATACAGTGCCCTCCATAAGTATTGGAACAGTAAAGACAAAATTGTTCTGGTAGCTGTGGTGTCAAGACATCTATAAATATGATTAATATTTATATTAATCATAATAATATTAAAAGATTAATATGAGGCAGAAGTACAGAATGTCACATTTTATTATTGACTGTTTCAACACAAAATGTTTTACCAACTAAGAAATACAGCACTTTTAGAGTTTTATTTGTTTATTTGCTTGTTTTGGGGAGTTTCTGCCTTTAGTCTCCTCTTCAGCTGGTGAAATGCTTGTTCAATAGGATTTAAATCTGGAGATTGACCAGTTTGGAATGTCCTGAAAAAGATAGATACCACTGGCAAGCTTCAGCAACCGACAACGACCAGGTCAGCTGAGAAAATCAACAGCAGTTGATGAGAGACAAATGACAAGGGCTATGAAAAAACTCTAAAATAACTGTCAGTAAAATCACCAGCAACCTCCAGAAAGCTGGGGTGATGGTCTCACAATCTGCTGTTCGCAGGAGACTTCACCAACAGAATTACAGAGGCTACACAGCAAGATCAAACATCTAATCAGTACCAAAAATAGGAAAGCCAATTTGAATTTGCAAAAACACACAGAGATGAGCCAGCAGAGTTTTAGAACAGAGTTTTATGGACAGATGAGACAAAGATGAACCTTTAAAAAAGTGGGAAAGCAAAAGTGTGGAGAAAAAAAAGAAACTGGAAATGATCCGAGGCATACAAGCTCATCTGGAAAGCATGGTGGAGGTAGTGTAGGGTGACCACCCGTCCCGCATTTTGCGGGACAGTCCCGAAATTGGGAGCTTTGTCCCGCGTCCCGCAAGACGTAAATAGTGTCCCGCATTTCAGTTATGTCTGTATTATTATTTTTTTTCATCCCTGAAATTACAATACCACAGTAAGAAATATAATTAAAACTGTGACTGGCATTTAAAAATTTATTTGTGTAGCCGTCATGTTCTAGCTGTGAAAATAACCAACCAGGTTCTCCCGCTTATGACAACTGAGTGGACAAGGAATAGCCTAGTGCGGGCCTCATCAAAGTCGGTAAACACAACTACACCAGCAAGGATTTCATCTCACACACTGGATAAGAACCTCAGGAGCTGCTCAAAGCTGCCCAAACTGATCATTTAAAGCATGTAATCATCCATCCTGATGTTAAATATTTCCAACGAACATGCACCGATCCCATGGATGCTCGAGCGCCACCTACGGAAAAAGACGAGATATTCTCCATTTGTTTAAAAAAAAAAAAAATTGATAGCAACTTTTAGACACGACTTTGTTCTCACGTTAATAGTTCATTTAATGCAGGTTCTATGGCGTCATTATAATGAAAAATGTCAAGAGTGCATTATTGTAACACGAGCGCATCAAATGCGTGAGCAGGAATCTCTCAGCTCACAGGCGGATTCCCTTCTCGCACAAAACTGGACACGCGCGCTCTCTCTCGCTCAGATATTACATGTGCGTGCTCAAACTTTGTCTTCCTGCATGTACACCCGTGAATCTAGAATTGTCTTCTCTCCAGGATTTAATGTTGCCAGAAGCGCAACATTATAGTGTGGGCAGAAACATTAATCGGCACATGTGCCAAGTTTACCAACAAATGTAAATCAATACATAGCGTAATAGCAGTAAATTTATCTGTCTCACACGTGTCCCGCATTGTTCCGCAAAATCACATCTACTGTCCTACAACAGATCAATAGCCAGGTGGTCACCCTAAGGTAGTGTCATATCATGGGCATGCATGTCTGCCTCTGGAACAGGCTCGCTCATCTTTATTGATGACTTATTTAATGATGGCAGCAGAAGAATGAATTCAGAAGTGTACAAAAGAATCTTGCCTACCAGTGTTCAAGAAAATGCCACCAGATTCACTGGGAAGCGCTTCATATGGCAACAGGACAATGACCCAAAACACTAGTACTGCCAACTCAATCAAGATTATCATGGTAAAGAAATTTTGGGTCTTAGATTGGCCAAGTCTACAGATTTAAATCCTATTGAACAAGTATTTCACCAGCTGAAGAGGAGACTAAAGGCAGAAACTCCCCAAAACAAGCAACTATTAAAAATGGCAACATTAAAGGCCTGGAAAAGCATTTCAAAGTGTGAAACCAAGTTTGTGTCTGTTGATGTCTATGGGTCACAGACTCGCTCCTGTGATTGCTTGCAAGAGATTTACAATTAAATATTAGCTTTTACACATTTTCATTTACTTTAAGTTAAACCGTCCCAATACTTATACTCACTTTAGGCAGAGGGATGAAACTCTAAAAGTGTTGTACTTCTTAGTTGGTAAAACATTTGGTATTGAAACAGTCAATAATAAAATGTGACTTTCTGTACTTCTGCCTCATATTAATTGTAAATAATATGAATATATATATATATTAGGGCTGTCAATAGATTACATTTTTTAATTGCGATTAATCACACACTTATTATAAAAATTAAGCATACACAATTTTCTTGTTTAACACGTCCATTTTGCCACCATTTCCTATATCCAGCAATGTAAACCATCAGATTGAAGTGTGATTTTCACAAAACTGTATTTTTCCAGCTTTTTTCAAGGTAAATTTAGATGTTTTTCCAAAAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU61132 True 3313 lncRNA 0.39 2 5859197 5895612

Neighbor

gene id symbol gene type direction distance location
CI01000009_05772094_05781990 NA coding upstream 76970 5770623 ~ 5782227 (+)
CI01000009_05761849_05767932 CREB1, CREB1A, CREB1B coding upstream 90494 5760983 ~ 5768703 (+)
CI01000009_05704310_05721474 KLF7, KLF7A, KLF7B coding upstream 137191 5703993 ~ 5722006 (+)
CI01000009_05696405_05703318 NA coding upstream 155276 5695671 ~ 5703921 (+)
CI01000009_05685508_05688628 NA coding upstream 170564 5685508 ~ 5688633 (+)
CI01000009_05931829_05943829 KCNH3 coding downstream 36106 5931718 ~ 5943899 (+)
CI01000009_05968963_05974380 DBR1 coding downstream 71847 5967459 ~ 5974750 (+)
CI01000009_05983361_05989883 TBCCD1 coding downstream 87749 5983361 ~ 5990583 (+)
CI01000009_05992944_05994452 CRYGS, CRYGS1, CRYGS2 coding downstream 97332 5992944 ~ 5994492 (+)
CI01000009_06002120_06017019 GTF2E1 coding downstream 106508 6002120 ~ 6017782 (+)
G53646 NA non-coding upstream 13373 5844049 ~ 5845824 (+)
G53676 NA non-coding upstream 78079 5780584 ~ 5781118 (+)
G53637 NA non-coding upstream 112246 5746575 ~ 5746951 (+)
G53632 NA non-coding upstream 116731 5742252 ~ 5742466 (+)
G53584 NA non-coding upstream 276512 5582457 ~ 5582685 (+)
G53723 NA non-coding downstream 140584 6036196 ~ 6036429 (+)
G53733 NA non-coding downstream 149909 6045521 ~ 6045723 (+)
G53666 NA non-coding downstream 169455 6065067 ~ 6095605 (+)
G53661 NA non-coding downstream 319461 6215073 ~ 6215460 (+)
G53669 NA non-coding downstream 320056 6215668 ~ 6244368 (+)
G53388 NA other upstream 320143 5522242 ~ 5540638 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 2650213 3202207 ~ 3208984 (+)
G51529 NA other upstream 2796610 3062033 ~ 3062587 (+)
G51274 NA other upstream 3508711 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 3957771 1897343 ~ 1919516 (+)
G53651 NA other downstream 349952 6245564 ~ 6248392 (+)
G56100 NA other downstream 3233688 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 3957747 9853929 ~ 9856587 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other downstream 5865174 11761606 ~ 11766944 (+)
G57811 NA other downstream 6038330 11933942 ~ 11935251 (+)

Expression


Co-expression Network