LOC103042234 (meis1,LOC107757034)


Basic Information

Item Value
gene id LOC103042234
gene name meis1,LOC107757034
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 4730629 ~ 4786885 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674570.1
gtgGGGTGGGGATGGGGGGATGCAGGTGGGGCAGTACAGCCAGTACTCACCGGCCTTTTGCCCCAAAGCCTGCGCGAGCCTCTTACTGGATTATGTTATTGCTGCGTACGAGGAGCCCACGAGCCACGATCGGGACTACAGCCtgatgtagtgtgtgtatgagtgtgtgagagtgtgtgtgagtgtgtgagagtgtgtgtgttgaaggcCGGGCTCGGACCGAGCGGCACGCGGGAGCAGCCTCGAGCTCATGGCGCAGCGGtatCCAGACCCCCTCTACCCCCCGGACCCTCTGTACCCAGAGTTTCCCGCAGTCCGGCCGGTTCTCGGAGCTCAGCTCTCCGCCAGCGAGGCGCTCCGGAGGGACAAAGACGCGATATACGGTCACCCACTGTTCCCACTGCTCGCGCTGGTTTTTGAGAAGTGTGAACTGGCCACGTGCACCCCGCGTGAGGGTGGGCTGGGGGGCGACGTGTGCTCCTCATCCTCCTTCGACGAAGATCTCACCGTCTTCTCCAAGCagATCAGAGCGGAGAGGCCGTACTTTCTCCCCAATCCAGACCTGGATAATCTAATGATGCAGTCTATACAAGTTCTACGATTTCATCTACTGGAATTAGAGAAGGTTCACGAGCTGTGTGATAATTTCTGTCACCGCTACATCAGCTGTCTGAAGGGGAAGATGCCGATGGATCTGGTGGTGGACGACAGGGAGGGCTCCTCTAAATCCGACAGTGAGGAGTTCAGCCGCAGCTCTGCAGCAGATCAGgtgtGTTGGAGGGAGGATGACTCTGTATCTGTTCACTCCACTGAAGGTCCTGCTGTTCCCTGCAGTGGAAGATCCAGTTCACTAAACGGAGACAACAGCAGTGAACACGGAGACCTCCTGGACCACAGTGCTGCTTCTCCGAGCACCGGAGATGATGATGACATGGACAAAGACCGTAGGAACAACAAAAAACGAGGGATTTTCCCCAAAGTGGCAACCAACATCATGCGAGCGTGGCTGTTCCAGCATCTCACACACCCGTACCCGTCTGAGGAGCAGAAGAAGCAGCTGGCTCAGGATACTGGCCTGACCATCCTACAGGTCAACAACTGgtTTATCAATGCGAGGAGGAGGATAGTGCAGCCGATGATAGATCAGTCTAATCGAGCGGTAGGTCACAGTGGGCCGTATCCTCCAGATGGTCAGACGATGGGAGGATATATGTTGGAAGGATCAGCTCACATGGGCCCCAGACCCCCAGGATCTCTGGCTGGGATGGGGATGGACCCTCAGTGGCACTACATGTAAACAGTGTGTTAGGTAATGCTACCACACCTGAACTTGAAACGAATCGTAGAAGGCCTTTCGTCAACACTAGAAATCTCGGAAACTCCATCGAATAAATGACCTCTCTGTGGCTAATGGAGCGCCGTGGCCTCACCACTGCCCAAACACACAGCCTGCTGTTCTCCAGAACACCACCAGAGCCTTCAGGATCAACATGTGGATTGGGAGATCAAATGGTGCGTCCATATCTGGAGATACCACACATGAACCCTAAGGCCACCATGACTGACCAGGTGGTAGAAGGAcctccagcattgagctgtggagtgacAGCATCATGAgagcaatcaaatcctcacagcagcgTCCAGAAATCTAGTGTAAAGCCATCCAAGAACAGCAGAGGAAGTGAAAAGGCTCAAAAACAAACTCACTATTAGTACCCTTGATTTCTGAAGGAACTTGTTGAACTTGGACTTTACTGGTTTCTTTATACTGGTTTATAGATTTAATGAGACAGTGCTGGAGTTCCTGTGGGGTCTGGAGACCAAAACTCTCCTCCAGAATCAGGTGACTCTCCTTCAGCTGCCTTAAAGAGTCCGAAACAATCTTCATTTCACCAGCAACACGAGAACTACCATATCTACTAAAATAGACTGAAGACTGCAATGCAAAGAACAAATAGCCTATtcaggctccgcccacaaatgtgttcttttatagAAACTGTTGGTCAGCTTATGAATGTTgcatttattgcattatttgtaGTCTTATATTGATAAAAATTGATAAAAAGTTGTTTCACCTCTAGTCAAACGCAGCTTCTCTTAATTTTCAAGGCCGTACCGATGCTAATGCAAGATAACAGGGCTAAATAGTGTTAAAATATGAGGTTTAATTCAGGCTAAACCTACTTAATTCAGGTTTAATTCTGATTAAGAGAGGCTAACGCTAAGAGATAATGCTAATTCTAATTCAGGTAAACCAAAGCCAACAGGTGTACTGTAATTTCGGCTGTCCCTAAAGGCTAATTCTGACTAAGAGATGCTA
>XM_022674571.1
gtgGGGTGGGGATGGGGGGATGCAGGTGGGGCAGTACAGCCAGTACTCACCGGCCTTTTGCCCCAAAGCCTGCGCGAGCCTCTTACTGGATTATGTTATTGCTGCGTACGAGGAGCCCACGAGCCACGATCGGGACTACAGCCtgatgtagtgtgtgtatgagtgtgtgagagtgtgtgtgagtgtgtgagagtgtgtgtgttgaaggcCGGGCTCGGACCGAGCGGCACGCGGGAGCAGCCTCGAGCTCATGGCGCAGCGGtatCCAGACCCCCTCTACCCCCCGGACCCTCTGTACCCAGAGTTTCCCGCAGTCCGGCCGGTTCTCGGAGCTCAGCTCTCCGCCAGCGAGGCGCTCCGGAGGGACAAAGACGCGATATACGGTCACCCACTGTTCCCACTGCTCGCGCTGGTTTTTGAGAAGTGTGAACTGGCCACGTGCACCCCGCGTGAGGGTGGGCTGGGGGGCGACGTGTGCTCCTCATCCTCCTTCGACGAAGATCTCACCGTCTTCTCCAAGCagATCAGAGCGGAGAGGCCGTACTTTCTCCCCAATCCAGACCTGGATAATCTAATGATGCAGTCTATACAAGTTCTACGATTTCATCTACTGGAATTAGAGAAGGTTCACGAGCTGTGTGATAATTTCTGTCACCGCTACATCAGCTGTCTGAAGGGGAAGATGCCGATGGATCTGGTGGTGGACGACAGGGAGGGCTCCTCTAAATCCGACAGTGAGGAGTTCAGCCGCAGCTCTGCAGCAGATCAGgtgtGTTGGAGGGAGGATGACTCTGTATCTGTTCACTCCACTGAAGGTCCTGCTGTTCCCTGCAGTGGAAGATCCAGTTCACTAAACGGAGACAACAGCAGTGAACACGGAGACCTCCTGGACCACAGTGCTGCTTCTCCGAGCACCGGAGATGATGATGACATGGACAAAGACCGTAGGAACAACAAAAAACGAGGGATTTTCCCCAAAGTGGCAACCAACATCATGCGAGCGTGGCTGTTCCAGCATCTCACACACCCGTACCCGTCTGAGGAGCAGAAGAAGCAGCTGGCTCAGGATACTGGCCTGACCATCCTACAGGTCAACAACTGgtTTATCAATGCGAGGAGGAGGATAGTGCAGCCGATGATAGATCAGTCTAATCGAGCGGGTCACAGTGGGCCGTATCCTCCAGATGGTCAGACGATGGGAGGATATATGTTGGAAGGATCAGCTCACATGGGCCCCAGACCCCCAGGATCTCTGGCTGGGATGGGGATGGACCCTCAGTGGCACTACATGTAAACAGTGTGTTAGGTAATGCTACCACACCTGAACTTGAAACGAATCGTAGAAGGCCTTTCGTCAACACTAGAAATCTCGGAAACTCCATCGAATAAATGACCTCTCTGTGGCTAATGGAGCGCCGTGGCCTCACCACTGCCCAAACACACAGCCTGCTGTTCTCCAGAACACCACCAGAGCCTTCAGGATCAACATGTGGATTGGGAGATCAAATGGTGCGTCCATATCTGGAGATACCACACATGAACCCTAAGGCCACCATGACTGACCAGGTGGTAGAAGGAcctccagcattgagctgtggagtgacAGCATCATGAgagcaatcaaatcctcacagcagcgTCCAGAAATCTAGTGTAAAGCCATCCAAGAACAGCAGAGGAAGTGAAAAGGCTCAAAAACAAACTCACTATTAGTACCCTTGATTTCTGAAGGAACTTGTTGAACTTGGACTTTACTGGTTTCTTTATACTGGTTTATAGATTTAATGAGACAGTGCTGGAGTTCCTGTGGGGTCTGGAGACCAAAACTCTCCTCCAGAATCAGGTGACTCTCCTTCAGCTGCCTTAAAGAGTCCGAAACAATCTTCATTTCACCAGCAACACGAGAACTACCATATCTACTAAAATAGACTGAAGACTGCAATGCAAAGAACAAATAGCCTATtcaggctccgcccacaaatgtgttcttttatagAAACTGTTGGTCAGCTTATGAATGTTgcatttattgcattatttgtaGTCTTATATTGATAAAAATTGATAAAAAGTTGTTTCACCTCTAGTCAAACGCAGCTTCTCTTAATTTTCAAGGCCGTACCGATGCTAATGCAAGATAACAGGGCTAAATAGTGTTAAAATATGAGGTTTAATTCAGGCTAAACCTACTTAATTCAGGTTTAATTCTGATTAAGAGAGGCTAACGCTAAGAGATAATGCTAATTCTAATTCAGGTAAACCAAAGCCAACAGGTGTACTGTAATTTCGGCTGTCCCTAAAGGCTAATTCTGACTAAGAGATGCTA
>XM_022674572.1
gtgtgGGGTGGGGATGGGGGGATGCAGGTGGGGCAGTACAGCCAGTACTCACCGGCCTTTTGCCCCAAAGCCTGCGCGAGCCTCTTACTGGATTATGTTATTGCTGCGTACGAGGAGCCCACGAGCCACGATCGGGACTACAGCCtgatgtagtgtgtgtatgagtgtgtgagagtgtgtgtgagtgtgtgagagtgtgtgtgttgaaggcCGGGCTCGGACCGAGCGGCACGCGGGAGCAGCCTCGAGCTCATGGCGCAGCGGtatCCAGACCCCCTCTACCCCCCGGACCCTCTGTACCCAGAGTTTCCCGCAGTCCGGCCGGTTCTCGGAGCTCAGCTCTCCGCCAGCGAGGCGCTCCGGAGGGACAAAGACGCGATATACGGTCACCCACTGTTCCCACTGCTCGCGCTGGTTTTTGAGAAGTGTGAACTGGCCACGTGCACCCCGCGTGAGGGTGGGCTGGGGGGCGACGTGTGCTCCTCATCCTCCTTCGACGAAGATCTCACCGTCTTCTCCAAGCagATCAGAGCGGAGAGGCCGTACTTTCTCCCCAATCCAGACCTGGATAATCTAATGATGCAGTCTATACAAGTTCTACGATTTCATCTACTGGAATTAGAGAAGGTTCACGAGCTGTGTGATAATTTCTGTCACCGCTACATCAGCTGTCTGAAGGGGAAGATGCCGATGGATCTGGTGGTGGACGACAGGGAGGGCTCCTCTAAATCCGACAGTGAGGAGTTCAGCCGCAGCTCTGCAGCAGATCAGgtgtGTTGGAGGGAGGATGACTCTGTATCTGTTCACTCCACTGAAGGTCCTGCTGTTCCCTGCAGTGGAAGATCCAGTTCACTAAACGGAGACAACAGCAGTGAACACGGAGACCTCCTGGACCACAGTGCTGCTTCTCCGAGCACCGGAGATGATGATGACATGGACAAAGACCGTAGGAACAACAAAAAACGAGGGATTTTCCCCAAAGTGGCAACCAACATCATGCGAGCGTGGCTGTTCCAGCATCTCACACACCCGTACCCGTCTGAGGAGCAGAAGAAGCAGCTGGCTCAGGATACTGGCCTGACCATCCTACAGGTCAACAACTGgtTTATCAATGCGAGGAGGAGGATAGTGCAGCCGATGATAGATCAGTCTAATCGAGCGGAAAGTCGAATGCTCCAAATCTATTTAATAGAACGTCTTCTCTGGACCTACTGCAGGATAAACTTCAACAAAATctggataaactcttttttttaatactcttgatttcagaatAAATCATGAATTAGTCTATATAGTGAATAGTGTTCTATAA

Function

symbol description
meis1 Enables DNA binding activity. Predicted to be involved in several processes, including angiogenesis; animal organ development; and negative regulation of myeloid cell differentiation. Predicted to act upstream of or within several processes, including hemopoiesis; lens morphogenesis in camera-type eye; and negative regulation of neuron differentiation. Predicted to be located in nucleus. Predicted to be part of chromatin.

NR:

description
PREDICTED: homeobox protein Meis1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674570.1 True 2329 mRNA 0.50 13 4730631 4786885
XM_022674571.1 False 2326 mRNA 0.50 13 4730631 4786885
XM_022674572.1 False 1315 mRNA 0.53 11 4730629 4777194

Neighbor

gene id symbol gene type direction distance location
LOC103025559 actr2,LOC108423375,LOC108441254,LOC104930021,LOC106585927,LOC107583198 coding upstream 59293 4648447 ~ 4671336 (+)
LOC103024921 LOC108441252,LOC108258536 coding upstream 105781 4507634 ~ 4624848 (+)
LOC103041106 NA coding upstream 309455 4388156 ~ 4421174 (+)
c12h1orf100 NA coding upstream 442604 4282750 ~ 4288025 (+)
pus10 pus10 coding upstream 494242 4219108 ~ 4236387 (+)
LOC103026170 NA coding downstream 9369 4796254 ~ 4804547 (+)
rad23a rad23a coding downstream 273650 5060535 ~ 5071142 (+)
LOC103031288 NA coding downstream 667807 5454692 ~ 5457457 (+)
rnaseh2a rnaseh2a,LOC107747423 coding downstream 690650 5477535 ~ 5486445 (+)
snrpb2 snrpb2,LOC107684252,LOC107676294 coding downstream 700577 5487462 ~ 5493881 (+)
G100915 spred2a,spred2,LOC108441255,LOC107594440,LOC107675542,LOC107747416,LOC107757033 non-coding upstream 8319 4700989 ~ 4722310 (+)
G100900 NA non-coding upstream 23259 4688455 ~ 4707370 (+)
G100895 NA non-coding upstream 55789 4639098 ~ 4674840 (+)
G100898 NA non-coding upstream 83306 4575766 ~ 4647323 (+)
G100910 NA non-coding upstream 166643 4563532 ~ 4563986 (+)
G100871 NA non-coding downstream 29628 4816513 ~ 4823900 (+)
G100930 NA non-coding downstream 57177 4844062 ~ 4940151 (+)
G100933 NA non-coding downstream 74761 4861646 ~ 4941169 (+)
G100938 NA non-coding downstream 184025 4970910 ~ 4981348 (+)
G100956 NA non-coding downstream 186079 4972964 ~ 5028408 (+)
atg4d atg4d other upstream 85273 4629123 ~ 4645356 (+)
G100820 akt3b,LOC108438606,LOC108259077,LOC107594289,LOC107729704,LOC107703832,LOC101071975 other upstream 462803 4250083 ~ 4267826 (+)
LOC103022119 NA other upstream 669880 4011995 ~ 4060749 (+)
LOC103023443 NA other upstream 1501263 3226739 ~ 3229366 (+)
G100314 NA other upstream 1521299 3158656 ~ 3209330 (+)
G100975 NA other downstream 299875 5086760 ~ 5091748 (+)
G101452 NA other downstream 1495140 6282025 ~ 6407811 (+)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other downstream 1513229 6300114 ~ 6302702 (+)
LOC103032856 march9,LOC108435943 other downstream 2168434 6955319 ~ 6997446 (+)
G101622 zc3h13 other downstream 2357917 7144802 ~ 7146340 (+)

Expression


Co-expression Network