rnaseh2a (rnaseh2a,LOC107747423)


Basic Information

Item Value
gene id rnaseh2a
gene name rnaseh2a,LOC107747423
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 5477535 ~ 5486445 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674582.1
ATACACAGCATGGTGTCAAAAATGTCACGTGACCGACTGGCGCCAATTCTAGAGTGTGCTACATCCGGGCCTTTTCCAGTCTGCAGAGCCGCTCAGcTGAAGCCCCACCTTTAAGCAGCCATGGACTTGGGTGTATTTGAAGCAGATAATTCGGTCAGCTGTCGGCTGGCCTCCGCTGTGCCGGAGGACTGTAAGAACGAGGACTGCTGTCTGGGTATCGATGAGGCTGGAAGGGGTCCTGTTCTGGgTCCGATGGTGTATGGAATATGTTTCTGTCCTGTATCCAGAAAGGAGGACCTGAAGGGTCTGAAAGTGGCAGaCTCAAAGACTCTATCAGAAGCAGAGAGGGAGAACCTGTTCGAGAAGCTGGATGAGGCAAAGAGCTTTGTTGGCTGGGCCCTTCAGATCCTGTCGCCCAATACCATCTCCACCAGCATGTTACAGAGGGCGAAGTATAATTTAAATGCACTGTCACACGACGCTGCTATTGGCTTGGTGCAGTTCGCTCTGGACTCCGGAGTACAGCTTAAAGAGGTATTTGTGGATACAGTGGGTCCAGCAGAAAAGTACGAGGAGAAGCTGTCTAAACGTTTTTCTGGAATAAAAGTTACAGTGCGACCCAAAGCAGACTCTCTGTTCCCCATAGTCAGTGCAGCCAGTATCTGTGCCAAGGTGGCCAGAGATCGAGTAGTGAAAGACTGGAAGTTTGCAGAAGATCTCGGGGAGGTGGACACGGAGTACGGTTCAGGATACCCTAACGatcCAAAGACTAAGAGCTGGATGCTGAAGTATCTGGATCCAGTGTTTGGATATCCTCAGTTTGTGCGGTTCAGCTGGAGCACAGCACAGACACTAATGGACAGTAAAGCAGTTACAGTACACTGggatgACGACGAGGAAGATGGTGAGAAAGCAGCAGCTCGCCAAAACAACACCTCCATGCTGTCGTACTTCGGCCGCAACAAACCAGCCGGCCAGACACAAACTCGGGAGACGCATCGCTTCTTTACTGAGCGCCGATTACAGACCGTCGACACActctgagcacacacacacacactaacacacacactcggaGTAGATTTCCAGAGCTAGTTCTGCAGCTTCAGCACTAAAGTCCAGTGTCTGCTGGAATCGTCATGTTGTATTTTATGCATATTTTCTTAAtatcaaagtaataaaaatgcatattttatacagtacaaACGTGTGTTGATGTGATTATTGTCTATAATTTGCCTTTAAGTTTGTATATTATTTCATcattaaactaataattaaaatca

Function

symbol description
rnaseh2a Predicted to enable RNA-DNA hybrid ribonuclease activity. Predicted to be involved in DNA replication, removal of RNA primer and mismatch repair. Predicted to act upstream of or within RNA metabolic process. Predicted to be part of ribonuclease H2 complex. Human ortholog(s) of this gene implicated in Aicardi-Goutieres syndrome. Orthologous to human RNASEH2A (ribonuclease H2 subunit A).

NR:

description
PREDICTED: ribonuclease H2 subunit A

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0004523 RNA-DNA hybrid ribonuclease activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K10743 RNASEH2A; ribonuclease H2 subunit A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674582.1 True 1286 mRNA 0.48 9 5477535 5486445

Neighbor

gene id symbol gene type direction distance location
LOC103031288 NA coding upstream 20078 5454692 ~ 5457457 (+)
rad23a rad23a coding upstream 406393 5060535 ~ 5071142 (+)
LOC103026170 NA coding upstream 672988 4796254 ~ 4804547 (+)
LOC103042234 meis1,LOC107757034 coding upstream 690650 4730629 ~ 4786885 (+)
LOC103025559 actr2,LOC108423375,LOC108441254,LOC104930021,LOC106585927,LOC107583198 coding upstream 806199 4648447 ~ 4671336 (+)
snrpb2 snrpb2,LOC107684252,LOC107676294 coding downstream 1017 5487462 ~ 5493881 (+)
LOC103027484 LOC108441199,LOC108258526 coding downstream 31628 5518073 ~ 5527443 (+)
fbxo48 fbxo48,LOC107684254 coding downstream 100844 5587289 ~ 5590899 (+)
cenpk cenpk coding downstream 175371 5661816 ~ 5669700 (+)
LOC103029074 NA coding downstream 191141 5677586 ~ 5795428 (+)
G101207 NA non-coding upstream 11120 5465950 ~ 5466415 (+)
G101186 NA non-coding upstream 113188 5363866 ~ 5364347 (+)
G101167 NA non-coding upstream 193692 5279027 ~ 5283843 (+)
G101020 NA non-coding upstream 200044 5277264 ~ 5277491 (+)
G101007 NA non-coding upstream 300395 5173943 ~ 5177140 (+)
G101232 NA non-coding downstream 27938 5514383 ~ 5514689 (+)
G101245 NA non-coding downstream 58970 5545415 ~ 5546545 (+)
G101247 NA non-coding downstream 73412 5559857 ~ 5567450 (+)
LOC111193477 NA non-coding downstream 133601 5620046 ~ 5620854 (+)
G101272 NA non-coding downstream 138648 5625093 ~ 5627363 (+)
G100975 NA other upstream 385787 5086760 ~ 5091748 (+)
atg4d atg4d other upstream 832179 4629123 ~ 4645356 (+)
G100820 akt3b,LOC108438606,LOC108259077,LOC107594289,LOC107729704,LOC107703832,LOC101071975 other upstream 1209709 4250083 ~ 4267826 (+)
LOC103022119 NA other upstream 1416786 4011995 ~ 4060749 (+)
LOC103023443 NA other upstream 2248169 3226739 ~ 3229366 (+)
G101452 NA other downstream 795580 6282025 ~ 6407811 (+)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other downstream 813669 6300114 ~ 6302702 (+)
LOC103032856 march9,LOC108435943 other downstream 1468874 6955319 ~ 6997446 (+)
G101622 zc3h13 other downstream 1658357 7144802 ~ 7146340 (+)
LOC103042156 NA other downstream 1898312 7384757 ~ 7393225 (+)

Expression


Co-expression Network