fbxo48 (fbxo48,LOC107684254)


Basic Information

Item Value
gene id fbxo48
gene name fbxo48,LOC107684254
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 5587289 ~ 5590899 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674584.1
ACGGGCGTTGTAGTGACGCCAGCgctgtaaataaacaggaaCGGGGCATTTAAACGGTCAGCTGTCAGAAACCGGAGCGACGGGGATTAAACCGGACGCTCTGCTGAACTGAAGACCTGGGTGATGCTGAGAGATGCAGCAGCATGTCTGTAAAAGGAAGAGCGACGTCTGTGTTTTCAGTGAAGGAAGACCCGCCCTGATCTCCCAGCAGGACTTCACAGAGACACTCCCGACGGAGATGAGCGTGCGGATCTTCAGCGAGCTGGACCTGAGGAGCCTGTGCAGCGCTTCGCTCACCTGCAAGCAGTGGAACGACATCATCGAGGGCAGCGACCACCTGTGGAGGAGCCACTGCCTGACCGTACTGGCCGTGTGTCGCAGGGACGTGGACGGGGACAGGCAGGACGGACTGACGTGGAAGGTTACTCTGGTGCATAATTATCGGAAGGGCTGCGTGAAGAGAAGGTGGTTAAAGGGCCGGTACAGTAACATCCGCAGTGCTGACGATCTCCCACCCAACAGCATGTGTCCCCTGGACGTGGAGACCTGGGGGGAGATCCTGGAGGCGGAGCTGGAGCGATAGACTCAATAGACTGTTAGGGTGGAGCTAAATCAACTGAAGTACTGTATGTGCTCCTCCCTGATGGACTGGATCCTTCACTCTGTGGAATAATTACCACGAATTACGTATTTTAAGGACATTTTTACGAGCTTTTTTGTAATCAGTGTAAAACGAAGATGGACGAATGCGTCATCAAATTGGGGGCTGATATGATTCAtgatttcatttcttttttcttttttttatttaaagaagaaAGCAGcctttttaattcattaatgaGGAGTTTATTACATTGTATGACAACACAGAATGaatcatacacaaaaaaaaaaagaaaatcatatgTTAACATTTACGGTATAAGGAATGTACTTTGTTATTTTGATCATTATTGTTTGTCATTGAaaagtattatattttaaatctgCACTTAATAAGAGACTCGATAAGAGAATGTGGTGTGCTGTTTATATATAACAAGTGCTGgaactttaattatttttctttatttgtggatattgtttttaaagctaATATATGATTTGTATGTTAAATTatctttatttcttcttctgaagttgttttgttttttaatcacatttgcCTTTAATATTGACAGATAAACTTCTAGtggtcatttttttaaaacaaaatcatgCAAATATTTGAGtgccatcatcatcttcattcaaataaacaatatttaaatgcTATCAA

Function

symbol description
fbxo48 Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex.

NR:

description
PREDICTED: F-box only protein 48

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674584.1 True 1282 mRNA 0.42 3 5587289 5590899

Neighbor

gene id symbol gene type direction distance location
LOC103027484 LOC108441199,LOC108258526 coding upstream 59846 5518073 ~ 5527443 (+)
snrpb2 snrpb2,LOC107684252,LOC107676294 coding upstream 93408 5487462 ~ 5493881 (+)
rnaseh2a rnaseh2a,LOC107747423 coding upstream 100844 5477535 ~ 5486445 (+)
LOC103031288 NA coding upstream 129832 5454692 ~ 5457457 (+)
rad23a rad23a coding upstream 516147 5060535 ~ 5071142 (+)
cenpk cenpk coding downstream 70917 5661816 ~ 5669700 (+)
LOC103029074 NA coding downstream 86687 5677586 ~ 5795428 (+)
LOC103029379 kcnq5,LOC108441989,LOC100711684,LOC102297355,LOC103148493 coding downstream 217539 5808438 ~ 6019959 (+)
LOC103030021 LOC108441987,LOC108258654 coding downstream 459951 6050850 ~ 6101321 (+)
LOC103034899 LOC103034899,LOC108441992 coding downstream 623150 6214049 ~ 6218486 (+)
G101247 NA non-coding upstream 19839 5559857 ~ 5567450 (+)
G101245 NA non-coding upstream 40744 5545415 ~ 5546545 (+)
G101232 NA non-coding upstream 72600 5514383 ~ 5514689 (+)
G101207 NA non-coding upstream 120874 5465950 ~ 5466415 (+)
G101186 NA non-coding upstream 222942 5363866 ~ 5364347 (+)
LOC111193477 NA non-coding downstream 29147 5620046 ~ 5620854 (+)
G101272 NA non-coding downstream 34194 5625093 ~ 5627363 (+)
G101306 NA non-coding downstream 160950 5751849 ~ 5754338 (+)
G101316 NA non-coding downstream 222994 5813893 ~ 5814742 (+)
G101336 NA non-coding downstream 272629 5863528 ~ 5877430 (+)
G100975 NA other upstream 495541 5086760 ~ 5091748 (+)
atg4d atg4d other upstream 941933 4629123 ~ 4645356 (+)
G100820 akt3b,LOC108438606,LOC108259077,LOC107594289,LOC107729704,LOC107703832,LOC101071975 other upstream 1319463 4250083 ~ 4267826 (+)
LOC103022119 NA other upstream 1526540 4011995 ~ 4060749 (+)
LOC103023443 NA other upstream 2357923 3226739 ~ 3229366 (+)
G101452 NA other downstream 691126 6282025 ~ 6407811 (+)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other downstream 709215 6300114 ~ 6302702 (+)
LOC103032856 march9,LOC108435943 other downstream 1364420 6955319 ~ 6997446 (+)
G101622 zc3h13 other downstream 1553903 7144802 ~ 7146340 (+)
LOC103042156 NA other downstream 1793858 7384757 ~ 7393225 (+)

Expression


Co-expression Network