LOC103025984 (ubac2)


Basic Information

Item Value
gene id LOC103025984
gene name ubac2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 6484337 ~ 6501618 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674625.1
ACGCGGAGtaagacacagacacacaaagttTGTCCCCTGCCAGCCGCCGTCCCCGACACCCTTtcccctctcttcttcttcccACAGAGACTTTCCCTTTCCCCGGCTGAGAGTTTTATTAACTGCATGGCGGAGAGAAGCGGCGCCGCGGCCTAGTCTCTGCTATTCTTCCACTCCGCGGTGTTTCCTGAGCGCGTGGCCAGCGGAATGTTCACCACTACCGGGTCCAGAGGGCTGTATAAAGCTCCTCTGTCGAagagcctgctgctgctgcctggcGCCCTCACTGTGCTGCTGATCCTGGGTCTGCCTCAGTACCAGAAGTTCTTTGTCTACAGCCTTCAGGCCGTGAAGCAGCACAAACAGGTCTGGAGGCTGCTAAGTGGAAGGCTGATCTGTCTGGATGTGAAGGACACGTTCTGCAGCAGTTTACTCATCTACAACTTTCGCATATTCGAGAGGAGGTTTGGCAGTCGTAAATTTGCATCTTTCCTGTTTGGAACCTGGGTTCTCTCTGGATTACTGGACTTCTGTTTGGCTGAAGCTCTTGGATTCTGCTTCGAGCTGCAGGTGGACGTGCTGCCGGCTGGACTcTACTTCCATGTTACAACTGGTTTATAGTGGGTGAATATGCTGTGATCTGGGGTTCTATtggttggtgtggtgtggtgccgtggataacaccacctcctgccagtgagctaccatgttgaagactagggttcaattccagaTCTGTGTGACTATGCTGTGCGACACCAATTAGAGTCCTTGGGTAAGACTCCTAATAGGAATAATTGTGTAAGTCGCTCTTGATAAGAGCATCAACTAAgtggtgtaaatgtaaaatgtaaatgttctaTAAACTCTTCATTTATCTTCTGAGAACTCTCTTACTTAGTGCTGCTGGCTAGGCATAAAGTTTGTTAATAGTGCATTAATGTTATCAAATAGTGTTTGaacattttagttaaaacaaagtcttttttttatataaaatacagctttgaagttcagtttctgaatcagtttctct

Function

symbol description
ubac2 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human UBAC2 (UBA domain containing 2).

NR:

description
PREDICTED: ubiquitin-associated domain-containing protein 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674625.1 True 1036 mRNA 0.47 5 6484337 6501618

Neighbor

gene id symbol gene type direction distance location
LOC103031289 dachc,LOC108435962,LOC108259061,LOC107732708,LOC107602747 coding upstream 21752 6351249 ~ 6462585 (+)
dis3 dis3 coding upstream 204226 6257549 ~ 6280111 (+)
LOC103034899 LOC103034899,LOC108441992 coding upstream 265851 6214049 ~ 6218486 (+)
LOC103030021 LOC108441987,LOC108258654 coding upstream 383016 6050850 ~ 6101321 (+)
LOC103029379 kcnq5,LOC108441989,LOC100711684,LOC102297355,LOC103148493 coding upstream 464378 5808438 ~ 6019959 (+)
LOC111193520 NA coding downstream 10846 6512464 ~ 6513258 (+)
LOC103031597 ubac2 coding downstream 19696 6521314 ~ 6529313 (+)
LOC103036567 LOC108435966 coding downstream 36729 6538347 ~ 6548346 (+)
igf2bp2 igf2bp2,LOC108435967,LOC105911772,LOC107749880,LOC107704342 coding downstream 52193 6553811 ~ 6633366 (+)
LOC103037816 cunh3orf70,LOC108435969,LOC107556711,LOC105912663,LOC102778299 coding downstream 190657 6692275 ~ 6733982 (+)
G101466 NA non-coding upstream 111040 6372757 ~ 6373297 (+)
G101455 NA non-coding upstream 136042 6338045 ~ 6348295 (+)
G101462 NA non-coding upstream 137204 6346557 ~ 6347133 (+)
G101459 NA non-coding upstream 170397 6312903 ~ 6313940 (+)
G101454 bora,LOC107556689 non-coding upstream 187430 6289342 ~ 6296907 (+)
G101483 NA non-coding downstream 28133 6529751 ~ 6536902 (+)
G101485 NA non-coding downstream 30385 6532003 ~ 6533758 (+)
G101490 NA non-coding downstream 77639 6579257 ~ 6627008 (+)
G101583 NA non-coding downstream 186667 6688285 ~ 6688632 (+)
G101610 NA non-coding downstream 496472 6998090 ~ 7013954 (+)
G101452 NA other upstream 76526 6282025 ~ 6407811 (+)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 181635 6300114 ~ 6302702 (+)
G100975 NA other upstream 1392589 5086760 ~ 5091748 (+)
atg4d atg4d other upstream 1838981 4629123 ~ 4645356 (+)
G100820 akt3b,LOC108438606,LOC108259077,LOC107594289,LOC107729704,LOC107703832,LOC101071975 other upstream 2216511 4250083 ~ 4267826 (+)
LOC103032856 march9,LOC108435943 other downstream 453701 6955319 ~ 6997446 (+)
G101622 zc3h13 other downstream 643184 7144802 ~ 7146340 (+)
LOC103042156 NA other downstream 883139 7384757 ~ 7393225 (+)
G102015 NA other downstream 2213221 8714839 ~ 8719235 (+)
LOC103025691 NA other downstream 2296127 8797745 ~ 8836081 (+)

Expression


Co-expression Network