LOC103041253


Basic Information

Item Value
gene id LOC103041253
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 7338167 ~ 7345064 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674644.1
tcattctctctctctctctctctgtctctctcacagcTTGCAGGTGGTGCGATCCTGGGTGTAGGTATCTGGGTGACGGTGGACAGCAGCTCCCTGCTGGGTGTTTTAGATCAGATTAAAGATGCGCCGCCTGAGTTAGCGCAGCTGGCAAATGTAGGCTACCTGCTGATCGCTGTGGGGGCCATACTGGCCATCATGGGCTTCCTGGGCTGCTGTGGAGCCATAACAGAGAGCAAGTGCATGCTCCTCACATTCTTCATCATCGTGCTACTCATCTTCATCGCAGAGGTGGCCGGGGCCATCGTTGTCTTTGTGTTCCAGCCCCTGgcAAAAGAACTGTTGCAGAAGGTCAGCGACAGCTTTGTTTTGACCATCAGGGAAAATTATGGAGAAGAAAAAACCTTTACATCACTGATGAATGACACTATGACTGAGCTGAAATGCTGTGGATTTAACAACTACACAGACTTTGACGGATCCCCtttcttaaagaacacttcGCATTACCCTGTGACCTGCTGTCTGGAAACCTCCACAGCATGTAGTCTCACAGAAGCAAGTGAACAGGAAGTGAAGGGTTGTTTTGATGCTATTTTGGACCTGTTGGAAGACAACGCTGCTCTGCTGGGAGGAGTGGCCCTTGGCATTGCTGCATTGGAGATTGCTGCAATGGTGGTCTCCATGGTCCTGTACAATAACGTGGGTAAATAACGACAAAGCCTGTGATTCACCAAGAAGCGACATATGCACTTCCTAACTGAACTGTTGTACTACTGTAAGAAGAAAATCAATGCACTAAATTTACTTATATCACTTTTCAGTCAAGTAAATTCGGTGCATCACAGTTTTTCATTATGTTCGAACTACTAAAAGCGATTCAACATAACATGCCAATGCTAATGAATGAGAGTCAGGAGGAACTAGCGAGCTAGCACTGCCTCATTTCTGTCAGTGGGCTACactgattagcttttattattattattagcaacattagcacTTATTGACGATGTATGACtggtttagaataaaaaaaaaacatgctaatGCAGCTAATAATGAATAAGACccatttttaactttaaactttTTAGCTAGCATTGCTTTATTTCTGTGACTTTGCTTCAGTTCTCGAATCTTTATCCTTTATTATGAGCAACATTAGcatgtaaaaaatgtacaaaaaaaaaaaagttagaatatATTTATACTCCAAGATTTCAATATTCTTTGGGTTATCTTGaaaaatgtgtcttttttttacagccagtGATGAAAGTAAAAAGCCTTGATCAGTATAAATACTGGGCATGATGGGCTTATTAAAccaactttattaactttactcaactttattcaattattaacactttatcatttttgtaaatgaacagaaagttttttattttttttcacccctTTGCAAGATTATACTGAGCACACTGCTGTATAATAAGACCTACAGGTAACAGACATGCAGTTTTCATTGCAGTCAGGCTTTATTCATGTCACTGTTCAATGTTTTACATTGTTATGTATCTTTTAATAGAACTTTACTtcatatttgtttgtactgtttGTTAATATtgaactgtaataaaatgttgAAAGTCT

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674644.1 True 1614 mRNA 0.39 6 7338167 7345064

Neighbor

gene id symbol gene type direction distance location
LOC103040938 rab3da,LOC103040938,LOC108435977,LOC108258507,LOC107757002,LOC107747429,LOC107675349,LOC107569532 coding upstream 19248 7294285 ~ 7318919 (+)
pld6 pld6,LOC107583251 coding upstream 49047 7285492 ~ 7289120 (+)
LOC103040632 LOC108435946,LOC107747441,LOC107676094 coding upstream 56328 7272558 ~ 7281839 (+)
spp2 NA coding upstream 141170 7190324 ~ 7196997 (+)
alg11 alg11,LOC107556718 coding upstream 154274 7176528 ~ 7183893 (+)
tpt1 tpt1,LOC107691594,LOC107567988,LOC107598740,LOC107654875 coding downstream 90566 7435630 ~ 7443495 (+)
pibf1 pibf1 coding downstream 124279 7469343 ~ 7538634 (+)
LOC103044305 NA coding downstream 197276 7542340 ~ 7560927 (+)
LOC103034778 LOC108437774 coding downstream 364235 7709299 ~ 7770528 (+)
LOC103023156 NA coding downstream 1195930 8540994 ~ 8543564 (+)
G101656 NA non-coding upstream 68024 7269806 ~ 7270143 (+)
G101636 NA non-coding upstream 163278 7174665 ~ 7174889 (+)
G101626 NA non-coding upstream 217858 7094547 ~ 7120309 (+)
G101620 NA non-coding upstream 218186 7118866 ~ 7119981 (+)
G101609 NA non-coding upstream 244097 6999086 ~ 7094070 (+)
G101674 NA non-coding downstream 24211 7369275 ~ 7369582 (+)
G101676 NA non-coding downstream 26007 7371071 ~ 7371397 (+)
G101679 LOC107655627,LOC107559781,LOC108256914,LOC108437766,LOC105901645 non-coding downstream 33198 7378262 ~ 7382475 (+)
G101767 NA non-coding downstream 104849 7449913 ~ 7452365 (+)
G101776 NA non-coding downstream 151406 7496470 ~ 7498497 (+)
G101622 zc3h13 other upstream 191827 7144802 ~ 7146340 (+)
LOC103032856 march9,LOC108435943 other upstream 340721 6955319 ~ 6997446 (+)
G101452 NA other upstream 930356 6282025 ~ 6407811 (+)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 1035465 6300114 ~ 6302702 (+)
G100975 NA other upstream 2246419 5086760 ~ 5091748 (+)
LOC103042156 NA other downstream 39693 7384757 ~ 7393225 (+)
G102015 NA other downstream 1369775 8714839 ~ 8719235 (+)
LOC103025691 NA other downstream 1452681 8797745 ~ 8836081 (+)
trnar-ucu_1 NA other downstream 1488776 8833840 ~ 8833931 (+)
G102411 LOC107747660 other downstream 3180613 10525677 ~ 10526160 (+)

Expression


Co-expression Network