pibf1 (pibf1)


Basic Information

Item Value
gene id pibf1
gene name pibf1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 7469343 ~ 7538634 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674648.1
AAGGTCCTTTTGTTTAACAGCTATCAAAGCAAAGCAGCTCACAGGGTTTGTGCACAATATGACTGGCCACGATTTCGTTCCCACgtcttaataagtcgtggctcCTGTGTTTAGTTTAGGGGTCGGTAGTGAAGTGGGCAGTCTCGCTGATAAAGGCTCTGTGGCAGACAGGCTCCTGTGTTTAGTTTAGGGGTCTGTTGTCTCCAGGAGCGGCGGGACGGTTAAACGGAGGAGTTGAATCCGCTTCTGGAGAGGGTAAAGCCGGCTAATACACTGTATCAGCCCCGCTCAGACACATTACTGCCTTTACTTGGATCTAAACAACACGGACTGGGGGTGTATTTAAAGatcCACTGACATGCCACCCAAAAAGCACAGGGATGGCACTCCCAACATCTCCAGCTCTCTGGAATCTGAAGATATCAGTCTGGAGACCACAGCACCTACTGACGACATCTCATCTTCAGACGAGAAGGATGGGACTCGGAAAGTCACCAAACAGCTGCTGGAGAGAAAAGAGCTGCTTCATAATCTTCAGCTTCTGAAAATCGAGCTCTCGCAGAAGAACCTTATTATTGACAATCTGAAAGTGGAACACCTTACCAAGATTGAGGAGCTGGAGGAGCGGCTGAATGATGCTCTACATCAGAAACAGGTCCTGGCGCTTCGACTGGACAGCCAGCTCAAACTCCAGCAGGATGAGAACAGAAAGCATCAGGCTCTGAGGAAGCAGGAGATGGACACCATCCTGCTGCGTCAGAAACAGCTGGAGGAGACCAACAGGCAGCTGTGTGATCGAGCCGGAGACATCCGCCGCAGCCTGAGGGATATGGAGCTGAGTGAGGAGAGATACACGGAGCTGAGAGAACTTCCAGAGGACAAACTCTCCATCTCTGAGTATGTAGCGGTGCGCTTCTACGAGGTGGTGACCCCCCTGAGGAATCAGGTGACTGAGCTGCAGATAAAGAGGAACAGCCTGGGTGATGACCTGGACAGCCATCGCAGCCAGATCAAATCCCTCATGGAGAGCTATGAGGATGAGAGAAGAGCTCGCTCAGAGCTGGAAATCCGCTGCCAGAGAGTGACTCTGGAATTGGCCGACACCAAGCAGCTCATACAGGAGGGCGACTACAAGCGGCAGAACTATGATAAAATCAAACGagagagagatggctaTGAGACGGAGGTGAGAGAGCTGAGGAAGAAGGTGGAGATGATGGACCTGACGCAGACAGCCCTGACCAAAGAGAGGAATGAACTCAGTAAAGAGGTGGCCACTCTGCAGCAGTCGGTTACTCTCCTGCAGAAAGATAAGGACTATCTGCACAGGCAGAACATGGAGCTGAACGTGCGCTGTGCTCACGAGGAGGATCGCCTGGAGAGACTGCAGGTCCAGCTGGAGGACACCAAGAAGGCCAGAGAGGAGGCCTACGATAAATACGTAGCTTCCAGGGATCACTATAAGACAGAGTATGAGAACAAGCTGAGGGACGAGCTGGAGCACATTCGCCTGAAGACCAGCCACGAGATCGAGAGCCTGCAGCGCGCCTCCAGGGAGATGTacgagagagagaacagAAGCCTTCGTGAAGCACGAGACAACGCAGCGCTGGAGAAAGAGCGAGCTGTGAGTGCAGAGAGGGAGATACAGGCCAAATACGACCAGCTCCTGGAACAGTTGAGGCAGCTGCAGCTAAACTCTGACAGTAAGGCGTCTGAGCTGCAGAACCAGATGAAGCTGAAGGCTTTCGAAGTGGAGCGTGCTCAGATGGTCCAAGAGGAAACGGCCAAGAACCTCAGCCTCTGCCAGATAGAATGTGAAAAGCATCAGAAGAAACTGGAGATTTTGACAAaagagttttacacactgcagtCGTCCTCAGAGAAACGTGTTGCAGAGCTGCAGTCCCAGAGCGTCGAACAGGAGAAGAGGCTGGAGATCTATGAGAAGCTGGAGAAGGAGTTGGATGACGTCACCATGCAGGCAGCAGAGAtggaaAACGAGGATGAGGCCGAGAGGGTGTTGTTTTCATACGGTTACGGGGCAAACGTGCCGACAACGGCCAAGAGGAGGCTAAAGCAGAGTGTTCATCTGGCGCGCAGAGTTCTGCAGTTAGAGAAGCAGAACACCATGCTGAGGAGAGACCTGGAGAGACGCTCTGCACATGTAGATCAAGTCACTGAAGAGCTGCAGACAACCAATCAGCTTCTTCAGCAGTCCCAACAGCCGTACAGCTACCTAATAGAAACAGTTCGCCAACGGGACACACGGATCCAGTCTCTAAAAGAGCGCCTCTcgcagctggaggaggaagtgAGTGCGCTGAAGAAAGAGAAAACCACACTGCTTCAGGTGAAAAACAACATGGCTGCTGATCTGGAGAGGTTGCTGAGCCACTGGGAGGAGCTGTCCGTCATGAAGCAGGTGCTGGTCAGCATGCGTTCACGGCAGCATGGGGAACCTTTATCCATATCGGAACCTGATATTGTGCATACTGGGACGGCTGTACACCTGCCCAGAAAGACCAGCAGAGCCACGGAGGAGGAGCAGTACCCTCCCAGACCTAAACCCACAGTCTTCACCAATAAAGAAGTCCCTGAATGGTACCGAAAGCTGAAGGTGAAGCCCAAATGACTAACCACACATGAATTTGAGAAAGCCAGCACGTACGCGAGCGAACGCAGGACTCATTCATGAAGGCATGCACTGGCTTTTTGACTGGACAGTGCATTTGTGTCAagattgtgtatatatttttggtgtatattaaaaaaagaaaacatttttga
>XM_022674649.1
AAGGTCCTTTTGTTTAACAGCTATCAAAGCAAAGCAGCTCACAGGGTTTGTGCACAATATGACTGGCCACGATTTCGTTCCCACgtcttaataagtcgtggctcCTGTGTTTAGTTTAGGGGTCGGTAGTGAAGTGGGCAGTCTCGCTGATAAAGGCTCTGTGGCAGACAGGCTCCTGTGTTTAGTTTAGGGGTCTGTTGTCTCCAGGAGCGGCGGGACGGTTAAACGGAGGAGTTGAATCCGCTTCTGGAGAGGatcCACTGACATGCCACCCAAAAAGCACAGGGATGGCACTCCCAACATCTCCAGCTCTCTGGAATCTGAAGATATCAGTCTGGAGACCACAGCACCTACTGACGACATCTCATCTTCAGACGAGAAGGATGGGACTCGGAAAGTCACCAAACAGCTGCTGGAGAGAAAAGAGCTGCTTCATAATCTTCAGCTTCTGAAAATCGAGCTCTCGCAGAAGAACCTTATTATTGACAATCTGAAAGTGGAACACCTTACCAAGATTGAGGAGCTGGAGGAGCGGCTGAATGATGCTCTACATCAGAAACAGGTCCTGGCGCTTCGACTGGACAGCCAGCTCAAACTCCAGCAGGATGAGAACAGAAAGCATCAGGCTCTGAGGAAGCAGGAGATGGACACCATCCTGCTGCGTCAGAAACAGCTGGAGGAGACCAACAGGCAGCTGTGTGATCGAGCCGGAGACATCCGCCGCAGCCTGAGGGATATGGAGCTGAGTGAGGAGAGATACACGGAGCTGAGAGAACTTCCAGAGGACAAACTCTCCATCTCTGAGTATGTAGCGGTGCGCTTCTACGAGGTGGTGACCCCCCTGAGGAATCAGGTGACTGAGCTGCAGATAAAGAGGAACAGCCTGGGTGATGACCTGGACAGCCATCGCAGCCAGATCAAATCCCTCATGGAGAGCTATGAGGATGAGAGAAGAGCTCGCTCAGAGCTGGAAATCCGCTGCCAGAGAGTGACTCTGGAATTGGCCGACACCAAGCAGCTCATACAGGAGGGCGACTACAAGCGGCAGAACTATGATAAAATCAAACGagagagagatggctaTGAGACGGAGGTGAGAGAGCTGAGGAAGAAGGTGGAGATGATGGACCTGACGCAGACAGCCCTGACCAAAGAGAGGAATGAACTCAGTAAAGAGGTGGCCACTCTGCAGCAGTCGGTTACTCTCCTGCAGAAAGATAAGGACTATCTGCACAGGCAGAACATGGAGCTGAACGTGCGCTGTGCTCACGAGGAGGATCGCCTGGAGAGACTGCAGGTCCAGCTGGAGGACACCAAGAAGGCCAGAGAGGAGGCCTACGATAAATACGTAGCTTCCAGGGATCACTATAAGACAGAGTATGAGAACAAGCTGAGGGACGAGCTGGAGCACATTCGCCTGAAGACCAGCCACGAGATCGAGAGCCTGCAGCGCGCCTCCAGGGAGATGTacgagagagagaacagAAGCCTTCGTGAAGCACGAGACAACGCAGCGCTGGAGAAAGAGCGAGCTGTGAGTGCAGAGAGGGAGATACAGGCCAAATACGACCAGCTCCTGGAACAGTTGAGGCAGCTGCAGCTAAACTCTGACAGTAAGGCGTCTGAGCTGCAGAACCAGATGAAGCTGAAGGCTTTCGAAGTGGAGCGTGCTCAGATGGTCCAAGAGGAAACGGCCAAGAACCTCAGCCTCTGCCAGATAGAATGTGAAAAGCATCAGAAGAAACTGGAGATTTTGACAAaagagttttacacactgcagtCGTCCTCAGAGAAACGTGTTGCAGAGCTGCAGTCCCAGAGCGTCGAACAGGAGAAGAGGCTGGAGATCTATGAGAAGCTGGAGAAGGAGTTGGATGACGTCACCATGCAGGCAGCAGAGAtggaaAACGAGGATGAGGCCGAGAGGGTGTTGTTTTCATACGGTTACGGGGCAAACGTGCCGACAACGGCCAAGAGGAGGCTAAAGCAGAGTGTTCATCTGGCGCGCAGAGTTCTGCAGTTAGAGAAGCAGAACACCATGCTGAGGAGAGACCTGGAGAGACGCTCTGCACATGTAGATCAAGTCACTGAAGAGCTGCAGACAACCAATCAGCTTCTTCAGCAGTCCCAACAGCCGTACAGCTACCTAATAGAAACAGTTCGCCAACGGGACACACGGATCCAGTCTCTAAAAGAGCGCCTCTcgcagctggaggaggaagtgAGTGCGCTGAAGAAAGAGAAAACCACACTGCTTCAGGTGAAAAACAACATGGCTGCTGATCTGGAGAGGTTGCTGAGCCACTGGGAGGAGCTGTCCGTCATGAAGCAGGTGCTGGTCAGCATGCGTTCACGGCAGCATGGGGAACCTTTATCCATATCGGAACCTGATATTGTGCATACTGGGACGGCTGTACACCTGCCCAGAAAGACCAGCAGAGCCACGGAGGAGGAGCAGTACCCTCCCAGACCTAAACCCACAGTCTTCACCAATAAAGAAGTCCCTGAATGGTACCGAAAGCTGAAGGTGAAGCCCAAATGACTAACCACACATGAATTTGAGAAAGCCAGCACGTACGCGAGCGAACGCAGGACTCATTCATGAAGGCATGCACTGGCTTTTTGACTGGACAGTGCATTTGTGTCAagattgtgtatatatttttggtgtatattaaaaaaagaaaacatttttga
>XM_022674650.1
AAAAGGTCCTTTTGTTTAACAGCTATCAAAGCAAAGCAGCTCACAGGGTTTGTGCACAATATGACTGGCCACGATTTCGTTCCCACgtcttaataagtcgtggctcCTGTGTTTAGTTTAGGGGTCGGTAGTGAAGTGGGCAGTCTCGCTGATAAAGGCTCTGTGGCAGACAGGCTCCTGTGTTTAGTTTAGGGGTCTGTTGTCTCCAGGAGCGGCGGGACGGTTAAACGGAGGAGTTGAATCCGCTTCTGGAGAGGGTAAAGCCGGCTAATACACTGTATCAGCCCCGCTCAGACACATTACTGCCTTTACTTGGATCTAAACAACACGGACTGGGGGTGTATTTAAAGatcCACTGACATGCCACCCAAAAAGCACAGGGATGGCACTCCCAACATCTCCAGCTCTCTGGAATCTGAAGATATCAGTCTGGAGACCACAGCACCTACTGACGACATCTCATCTTCAGACGAGAAGGATGGGACTCGGAAAGTCACCAAACAGCTGCTGGAGAGAAAAGAGCTGCTTCATAATCTTCAGCTTCTGAAAATCGAGCTCTCGCAGAAGAACCTTATTATTGACAATCTGAAAGTGGAACACCTTACCAAGATTGAGGAGCTGGAGGAGCGGCTGAATGATGCTCTACATCAGAAACAGGTCCTGGCGCTTCGACTGGACAGCCAGCTCAAACTCCAGCAGGATGAGAACAGAAAGCATCAGGCTCTGAGGAAGCAGGAGATGGACACCATCCTGCTGCGTCAGAAACAGCTGGAGGAGACCAACAGGCAGCTGTGTGATCGAGCCGGAGACATCCGCCGCAGCCTGAGGGATATGGAGCTGAGTGAGGAGAGATACACGGAGCTGAGAGAACTTCCAGAGGACAAACTCTCCATCTCTGAGTATGTAGCGGTGCGCTTCTACGAGGTGGTGACCCCCCTGAGGAATCAGGTGACTGAGCTGCAGATAAAGAGGAACAGCCTGGGTGATGACCTGGACAGCCATCGCAGCCAGATCAAATCCCTCATGGAGAGCTATGAGGATGAGAGAAGAGCTCGCTCAGAGCTGGAAATCCGCTGCCAGAGAGTGACTCTGGAATTGGCCGACACCAAGCAGCTCATACAGGAGGGCGACTACAAGCGGCAGAACTATGATAAAATCAAACGagagagagatggctaTGAGACGGAGGTGAGAGAGCTGAGGAAGAAGGTGGAGATGATGGACCTGACGCAGACAGCCCTGACCAAAGAGAGGAATGAACTCAGTAAAGAGGTGGCCACTCTGCAGCAGTCGGTTACTCTCCTGCAGAAAGATAAGGACTATCTGCACAGGCAGAACATGGAGCTGAACGTGCGCTGTGCTCACGAGGAGGATCGCCTGGAGAGACTGCAGGTCCAGCTGGAGGACACCAAGAAGGCCAGAGAGGAGGCCTACGATAAATACGTAGCTTCCAGGGATCACTATAAGACAGAGTATGAGAACAAGCTGAGGGACGAGCTGGAGCACATTCGCCTGAAGACCAGCCACGAGATCGAGAGCCTGCAGCGCGCCTCCAGGGAGATGTacgagagagagaacagAAGCCTTCGTGAAGCACGAGACAACGCAGCGCTGGAGAAAGAGCGAGCTGTGAGTGCAGAGAGGGAGATACAGGCCAAATACGACCAGCTCCTGGAACAGTTGAGGCAGCTGCAGCTAAACTCTGACAGTAAGGCGTCTGAGCTGCAGAACCAGATGAAGCTGAAGGCTTTCGAAGTGGAGCGTGCTCAGATGGTCCAAGAGGAAACGGCCAAGAACCTCAGCCTCTGCCAGATAGAATGTGAAAAGCATCAGAAGAAACTGGAGATTTTGACAAaagagttttacacactgcagtCGTCCTCAGAGAAACGTGTTGCAGAGCTGCAGTCCCAGAGCGTCGAACAGGAGAAGAGGCTGGAGATCTATGAGAAGCTGGAGAAGGAGTTGGATGACGTCACCATGCAGGCAGCAGAGAtggaaAACGAGGATGAGGCCGAGAGGGTGTTGTTTTCATACGGTTACGGGGCAAACGTGCCGACAACGGCCAAGAGGAGGCTAAAGCAGAGTGTTCATCTGGCGCGCAGAGTTCTGCAGTTAGAGAAGCAGAACACCATGCTGAGGAGAGACCTGGAGAGACGCTCTGCACATGTAGATCAAGTCACTGAAGAGCAGGCTCACGCTCTTTGATGTGGCGTAGCTCTGACATTTACCCTTCCTCATCACTCCGAGCGGGTAGAGAAGAGGAGTCGCCCACAGTCAAATTGGGCCAGAAACCGACGCAAGTCGACACTTGTTGCAGCTCTCCTCTCCTGCAACCTCCTGCAGCACTGGGCTGTTCTCTAGGATCATGTTGTGCCTTGTGTTATGATTTGAGAGATTTCTGTGGtagagattattattttttacaaccGCAAATCAGCGAGAGTATGGgaaatgctaataaaaaaaaaccctacagtgtttc

Function

symbol description
pibf1 Predicted to be involved in cilium assembly. Predicted to be active in centriolar satellite. Human ortholog(s) of this gene implicated in Joubert syndrome 33. Orthologous to human PIBF1 (progesterone immunomodulatory binding factor 1).

NR:

description
progesterone-induced-blocking factor 1

GO: NA

KEGG:

id description
K16538 PIBF1, CEP90; progesterone-induced-blocking factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674648.1 True 2790 mRNA 0.52 18 7469345 7538634
XM_022674649.1 False 2697 mRNA 0.52 18 7469345 7538634
XM_022674650.1 False 2485 mRNA 0.52 15 7469343 7510405

Neighbor

gene id symbol gene type direction distance location
tpt1 tpt1,LOC107691594,LOC107567988,LOC107598740,LOC107654875 coding upstream 25848 7435630 ~ 7443495 (+)
LOC103041253 NA coding upstream 124279 7338167 ~ 7345064 (+)
LOC103040938 rab3da,LOC103040938,LOC108435977,LOC108258507,LOC107757002,LOC107747429,LOC107675349,LOC107569532 coding upstream 150424 7294285 ~ 7318919 (+)
pld6 pld6,LOC107583251 coding upstream 180223 7285492 ~ 7289120 (+)
LOC103040632 LOC108435946,LOC107747441,LOC107676094 coding upstream 187504 7272558 ~ 7281839 (+)
LOC103044305 NA coding downstream 3706 7542340 ~ 7560927 (+)
LOC103034778 LOC108437774 coding downstream 170665 7709299 ~ 7770528 (+)
LOC103023156 NA coding downstream 1002360 8540994 ~ 8543564 (+)
LOC103024012 creb1a,LOC107757658,LOC107714305,LOC108437762,LOC107552236,LOC107691602 coding downstream 1111486 8650120 ~ 8664508 (+)
LOC111193523 NA coding downstream 1146270 8684904 ~ 8686520 (+)
G101767 NA non-coding upstream 16978 7449913 ~ 7452365 (+)
G101679 LOC107655627,LOC107559781,LOC108256914,LOC108437766,LOC105901645 non-coding upstream 86868 7378262 ~ 7382475 (+)
G101676 NA non-coding upstream 97946 7371071 ~ 7371397 (+)
G101674 NA non-coding upstream 99761 7369275 ~ 7369582 (+)
G101656 NA non-coding upstream 199200 7269806 ~ 7270143 (+)
G101832 NA non-coding downstream 188523 7727157 ~ 7727563 (+)
G101836 NA non-coding downstream 248119 7786753 ~ 7798517 (+)
G101862 NA non-coding downstream 282804 7821438 ~ 7821748 (+)
G101863 NA non-coding downstream 310681 7849315 ~ 7849533 (+)
G101868 NA non-coding downstream 368873 7907507 ~ 7908973 (+)
LOC103042156 NA other upstream 76118 7384757 ~ 7393225 (+)
G101622 zc3h13 other upstream 323003 7144802 ~ 7146340 (+)
LOC103032856 march9,LOC108435943 other upstream 471897 6955319 ~ 6997446 (+)
G101452 NA other upstream 1061532 6282025 ~ 6407811 (+)
G102015 NA other downstream 1176205 8714839 ~ 8719235 (+)
LOC103025691 NA other downstream 1259111 8797745 ~ 8836081 (+)
trnar-ucu_1 NA other downstream 1295206 8833840 ~ 8833931 (+)
G102411 LOC107747660 other downstream 2987043 10525677 ~ 10526160 (+)
LOC111193528 NA other downstream 3329943 10868577 ~ 10870156 (+)

Expression


Co-expression Network