LOC103024012 (creb1a,LOC107757658,LOC107714305,LOC108437762,LOC107552236,LOC107691602)


Basic Information

Item Value
gene id LOC103024012
gene name creb1a,LOC107757658,LOC107714305,LOC108437762,LOC107552236,LOC107691602
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 8650120 ~ 8664508 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674661.1
GGCTCGTCTGGTTCCGCGGCAGAGGCGGTGGTGAATCCGAGGCAGCTGCGGGTTTTTTTCGTCCCCCTCGTTTCTCTCTGGCGTTGTTGTCCTCGGTGACGCGGCGGAGGTGTAGCCTGACGCGGTCTCTTACGTGTCGGACCGAATAAAAGTGGAGCTCCGGAGGCCTGCGAGTGACGGGGAGAGCGGGTCCGTGTCGGGTTTTCTAAATGACCATGGAGGCAGGAGCAGACGTCCAGCAGGGTGGGGACACTGCTGTCTCTGAGACCGATACCCAACAGATTGCCACTTTGGCGCAGGTTTCAATGGCAGCAGGGCAGGTCTCAGCCAGCGGACCTACCGTGACCCTGGTGCAGCTGCCCAATGGTCAGACGGTTCAGGTTCATGGGGTCATACAGGCTGCCCAGCCTTCAGTTATCCAGTCCCCCCAGGTCCAGACTGTACAGATCTCCACCATCGCTGAGAGTGAGGACTCGCAGGAGTCGGTGGACAGCGTGACGGATTCTCAGAAACGGAGGGAGATCCTCTCCAGAAGACCGTCTTACAGAAAGATCCTGAACGACCtgtcatcagacgctccagcgGTTCCACGGATAGAGGAAGAGAAATCGGAGGAGGACTCTGCTCCAGCCATAACAACAGTCACGGTGCCAACGCCTATTTATCAGACGAGCAGCGGCCAGTACATCGCCATCACGCAGGGAGGGGCCATCCAGCTGGCCAATAACGGAACAGATGGGGTTCAGGGACTCCAGACCCTGACGATGACCAACGCGGCGGGCGCCCAGCCAGGCACCACCATTCTGCAATACGCCCAGACCAGCGACGGCCAGCAGATCCTCGTGCCCAGCAACCAGGTGGTTGTGCAAGCTGCCTCCGGGGATGTCCAGGCATACCAGATCCGTACTGCAGCTGCCAGCACCATCGCTCCCGGGGTGGTTATGGCGTCCTCTCCTGTTCTGTCTGGCCAGGGAGGGGCAGAGGAGGCCACACGCAAGAGGGAGGTCCGCCTCATGAAGAACAGGGAGGCAGCGCGGGAGTGCCGTCGGAAGAAGAAGGAGTACGTCAAGTGTCTGGAGAACCGCGTGGCCGTGCTGGAGAACCAGAACAAAACCCTCATCGAGGAGCTCAAAGCACTTAAAGACCTTTACTGTCACAAATCTGAATAACTCTGCTGCTCTGCAtcctcacaaatacacacatacatacacagacatagacatacacacacaaaaaaacacacacacgtctgTGTCTCAGCTGCCAGACAGACTGTCGTCGTCGCTGCCCCCCTCCAGGTTCTTCAGAGACAGAGACTCTTTTCACATGAAGCCTGGGTGGCGTTCTTCTCGTTTTCTATGtatctatacattttttaaggaaaaaaaagcaacaaaaatattattatggGTTTGCAGGATGAGTGAGGGGACGATACAGACAACTACAGCGGATATGAAAACTTTATTGTCTTTAATCATTTTTCTTTCATTCGTTCATTTTGTTTCCTGTGAAAAGAAATGAGAGAAGCAAACTTTTAAAAGATTATGTATTTGACTTTCTTTTGACACACAACTCCTAAAGGCCCAGCAGAAGGTGGATGAGTGGTGGATCACAATTGGAAGTTTGACATAAGggcaaatatacaaatatatacctGGCCTTCAGAAGGAAGACTGGCTGCAACTGGACTCGCACTCAAGCTCACACCTGGATTCGCCTCGGATTCACCACATACAACGGAGTCGCTACATCATTCAAGTCATACAACAAATACGCAGCTAATCAGATTTGGGCTTCACGCTTTTTCTTTCTGggctatttctcttttttttttgtgattttcacTTTCGAAAGCTCCCACAAGGCATCAGATAGTTTGGATGACCACCACAGCTCCACCAATCATGACTTTTTAATGGAGATGTGGATCATCCAGTTCagttccattcattcatccactcaTGGGAATTTGGAATTTTCAGAATGGGTCATAATCAGCATTTCAGCAGCCGGGCCCattgctgttgttttattgcttttttctgTTACACTCAAACCCTGTTTTTGTcggggtgattttttttttttttttttttgtaggaatTTGTAGCTCTGTTGCTATTGAGAAAAAGATGTATGCCTCTATTAATGAGTTTTGACATGATTTTGACATTTAA

Function

symbol description
creb1a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and cAMP response element binding activity. Acts upstream of or within convergent extension involved in axis elongation; midbrain-hindbrain boundary development; and somitogenesis. Predicted to be located in nucleus. Predicted to be part of ATF4-CREB1 transcription factor complex. Is expressed in nervous system; presumptive neural retina; and proliferative region. Orthologous to human CREB1 (cAMP responsive element binding protein 1).

NR:

description
PREDICTED: cyclic AMP-responsive element-binding protein 1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001756 somitogenesis biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K05870 CREB1; cyclic AMP-responsive element-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674661.1 True 2180 mRNA 0.50 8 8650120 8664508

Neighbor

gene id symbol gene type direction distance location
LOC103023156 NA coding upstream 106556 8540994 ~ 8543564 (+)
LOC103034778 LOC108437774 coding upstream 879592 7709299 ~ 7770528 (+)
LOC103044305 NA coding upstream 1089193 7542340 ~ 7560927 (+)
pibf1 pibf1 coding upstream 1111486 7469343 ~ 7538634 (+)
tpt1 tpt1,LOC107691594,LOC107567988,LOC107598740,LOC107654875 coding upstream 1206625 7435630 ~ 7443495 (+)
LOC111193523 NA coding downstream 20396 8684904 ~ 8686520 (+)
LOC103036357 NA coding downstream 175566 8840074 ~ 8851853 (+)
serhl2 NA coding downstream 427652 9092160 ~ 9105524 (+)
LOC111193613 NA coding downstream 452007 9116515 ~ 9119412 (+)
sept3 sept3,LOC107551931 coding downstream 456009 9120517 ~ 9136341 (+)
G102004 NA non-coding upstream 31728 8618171 ~ 8618392 (+)
G101974 NA non-coding upstream 110403 8539482 ~ 8539717 (+)
G101954 NA non-coding upstream 232499 8417197 ~ 8417621 (+)
G101949 NA non-coding upstream 299422 8350429 ~ 8350698 (+)
LOC111193521 NA non-coding upstream 310851 8328448 ~ 8339269 (+)
G102014 NA non-coding downstream 41910 8706418 ~ 8706877 (+)
G102081 mxra5 non-coding downstream 194090 8858598 ~ 8863829 (+)
G102088 NA non-coding downstream 249886 8914394 ~ 8914600 (+)
G102098 NA non-coding downstream 434244 9098752 ~ 9101093 (+)
LOC111193524 NA non-coding downstream 446382 9110890 ~ 9115477 (+)
LOC103042156 NA other upstream 1256895 7384757 ~ 7393225 (+)
G101622 zc3h13 other upstream 1503780 7144802 ~ 7146340 (+)
LOC103032856 march9,LOC108435943 other upstream 1652674 6955319 ~ 6997446 (+)
G101452 NA other upstream 2242309 6282025 ~ 6407811 (+)
G102015 NA other downstream 50331 8714839 ~ 8719235 (+)
LOC103025691 NA other downstream 133237 8797745 ~ 8836081 (+)
trnar-ucu_1 NA other downstream 169332 8833840 ~ 8833931 (+)
G102411 LOC107747660 other downstream 1861169 10525677 ~ 10526160 (+)
LOC111193528 NA other downstream 2204069 10868577 ~ 10870156 (+)

Expression


Co-expression Network