LOC103043054


Basic Information

Item Value
gene id LOC103043054
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 13580127 ~ 13590984 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674734.1
GAGCTGGAGCACAAAGTTGTCACTCTGGTAAAGAATCAGCTGAAGATGTTTGTGAAGATCCTGAGTCTGGATTACCCAGCATCTTCTGAGAAAGAggtggaggatgaggaggatgagAGTGGTGTCAGAGAGGGGGCGCTGAAGATCACACTGCACGTCCTAAGGAATAATAAACAGACAGACCTCGCTAACAAACTGCAGACCAAACTGGCTCCTTTTTGCCAAAAGAAGCTAAAATCCACACTGAAGGAAAGATTTCAGAAAATTAATGAAGGAATCTCAAATCCTGGAACCTCAGTCCTTTTGAATGAGATCTTCACAGAGCTGTACATCACAGAGGGAGGGAGTGGAGAGGTCAATAATGAACACGAGGTCAGACAGATTGAAGCAGCATCCAGGAGACGAGCAACACAGGAGACGCCCATCAAGTGCAATGACATATTTAAAGACCAGTCCATCAGAACTGTGCTCACtaaaggagttgctggaattggaaaaacagtctctgtgcagaagttcattctggactggGCTGAAGGGAAAGCAAATCAAGATGTGATCTTTatatttccacttccttttagaGAGCTGAATTTAATGAAAACTGAAACACTCAGTCTGAATGATCTTCTTAATAAGTtctttaaagaaacaaaacacttaAAGCCAGTGGACTATTACAACTACAAAGTCATGTTCAtctttgatggtctggatgagtgTCGACTTCCTCTGGATTTCCAGAACAATGAGAGTGTATTGGATGTAACACAGTCAGTTCCTGTTGATGTGCTGCTGACAAACCTCATCAAGAAGAATCTGCTCCCCTCTGCACTCCTATGGATAACTACTCGACCAGCAGCATCCAATCAGATCCCACCTGACTGCATTAACCAGGTGACAGAGGTACGAGGGTTCAGTGACCCTCAGAAAGAGGAATACTTCAGGAAAAGGGTCAGTGATAAGAGCCTTGCTGAAAGGATCATTACTTACATGAAGTCATCAAGAAGCCtctacatcatgtgccacattCCAGTCTTCTGTTGGATTGCAGCCACTGTTCTAGAAAGGATGTTGGGTGAAGATGAGAATGTAGAGATCCCCAAGACTCTCACTCAAATGTTCACACGTTTCCTGATCTTTCAGATCAAACACAGCAGCCAGAAGTACCTTGATGAAAGCGACCCTGATTGTAAGAAGACTAGAAAGATTGTTCTAGCTCTTGGAAAACTGGCTTTTCAACAGTTGAAGAAGGGAAACTTAATATTTTATGATGAAGACCTGAGAGAGTGCGGCATTGATGTCGAAGAAGTGTctgtgtactcaggagtgtgcaCCCAGATTTTCAGACAGGAGTTTGGGCTGCACCTGGGGAAGGTTTTCAGTTTTGTGCACCTGAGTGTTCAGGAGTTCCTGGCTGCATTATATGCATTTCTGTCCTTCATTTGCAACAACCAAAATGTGCTGCAACACCAAGCCAAGAATGTAAGAAAGCCAACAGTGTCTAGATTCCTTAAGGTTGCCGTGGACAAGGCCTTACAGAGTGACAACGGACACCTGGACCTTTTCCTCCGCTTCGTTTTGGGTCTCTCACTGGAGTCCAATCAGATTCTCTTACGAGGGCTGCTGCCACTGACCAGAAACAGCTCTGACAGCAAAGCGAAAATAGTCACATTCATCAAAGAGAAGATCAGGAAGGCTCCCTCTCCAGAAAAAACAATCACTCTGTTCCACTGTCTGAATGAACTTAATGATCAATCTCTAGTGCAGGAAGTCCAAAAGTACCTGAGCAGAGAAGGTTCCAGTGATTTCACTGGAGGTGGGCTCTCTCCTATTCAGTGGTCAGCTGTGGCGTTTGTCCTGCTGAATTCAGAAGATGAGCTGATTGAGTTCGACCTGAGTAAATTTGACAGATCAGAAGAATGTCTTCTGAGGCTGCTGCCAGTGGTGAAAGCATCCAGGAATATTGTCCTACACTGGTGCAATATATCAGAGGAAGGTTGTGCAGCTTTGGCTTCAGTCCTCAGCTCTAACCCCTCAAGTCTGAGAGAACTGGACCTGAGTTATAATaaactgcaggattcaggactgaagctgctctctgctggactggaAAATCCAAACTGTAAACTTGAGAAACTGGTGTTGTGGGGGTGTAATATATCAGAGGAAAGCTGTGCCACTCTGGCCTCAGTTCTCAGCTCAAACTCTTCAAGTCTGAAAATACTAAACATGAATGTTAATgaactgcaggattcaggagtgaagctactctctgctggactgaagaatcCACAGTGTAAATTAGAGAAACTGGCGCTGCAATGTTGCAATCTGTCAGATGAAGGCTGTGCAGCTCTGGCATTAGCTCTCAGCTCCAACTCCTCAAGTCTGAGAGAACTGGACCTGAGTTATAATGAACTGCAtgattcaggagtgaagctgctctctgctggactggaGAATCCACAgtgtaaactggagaaactggtGCTGTATGATTGTAATATATCAGAGGAAGGCTGTGCAGCTCTGgcctcagctctcagctcaaACTTCTCAAGTCTGAGAGAACTGGACCTGAGGTATAATgaactgcaggattcaggacggaagctgctctctgctgtaAAGGAGAATCCACAatgtaaactggagaaactgcaCTTTTGAGTACCTGACCTGCTTTTACAGTCTTTCCGGCATCACTTCCTGTTTATCAATGACTGCACCTGTCCATCAAGCTTCTTCTctttgtcacacacacacacacacacacacacacacacacacacacacacaccacacacacacacact
>XM_022674735.1
GAGCTGGAGCACAAAGTTGTCACTCTGGTAAAGAATCAGCTGAAGATGTTTGTGAAGATCCTGAGTCTGGATTACCCAGCATCTTCTGAGAAAGAggtggaggatgaggaggatgagAGTGGTGTCAGAGAGGGGGCGCTGAAGATCACACTGCACGTCCTAAGGAATAATAAACAGACAGACCTCGCTAACAAACTGCAGACCAAACTGGCTCCTTTTTGCCAAAAGAAGCTAAAATCCACACTGAAGGAAAGATTTCAGAAAATTAATGAAGGAATCTCAAATCCTGGAACCTCAGTCCTTTTGAATGAGATCTTCACAGAGCTGTACATCACAGAGGGAGGGAGTGGAGAGGTCAATAATGAACACGAGGTCAGACAGATTGAAGCAGCATCCAGGAGACGAGCAACACAGGAGACGCCCATCAAGTGCAATGACATATTTAAAGACCAGTCCATCAGAACTGTGCTCACtaaaggagttgctggaattggaaaaacagtctctgtgcagaagttcattctggactggGCTGAAGGGAAAGCAAATCAAGATGTGATCTTTatatttccacttccttttagaGAGCTGAATTTAATGAAAACTGAAACACTCAGTCTGAATGATCTTCTTAATAAGTtctttaaagaaacaaaacacttaAAGCCAGTGGACTATTACAACTACAAAGTCATGTTCAtctttgatggtctggatgagtgTCGACTTCCTCTGGATTTCCAGAACAATGAGAGTGTATTGGATGTAACACAGTCAGTTCCTGTTGATGTGCTGCTGACAAACCTCATCAAGAAGAATCTGCTCCCCTCTGCACTCCTATGGATAACTACTCGACCAGCAGCATCCAATCAGATCCCACCTGACTGCATTAACCAGGTGACAGAGGTACGAGGGTTCAGTGACCCTCAGAAAGAGGAATACTTCAGGAAAAGGGTCAGTGATAAGAGCCTTGCTGAAAGGATCATTACTTACATGAAGTCATCAAGAAGCCtctacatcatgtgccacattCCAGTCTTCTGTTGGATTGCAGCCACTGTTCTAGAAAGGATGTTGGGTGAAGATGAGAATGTAGAGATCCCCAAGACTCTCACTCAAATGTTCACACGTTTCCTGATCTTTCAGATCAAACACAGCAGCCAGAAGTACCTTGATGAAAGCGACCCTGATTGTAAGAAGACTAGAAAGATTGTTCTAGCTCTTGGAAAACTGGCTTTTCAACAGTTGAAGAAGGGAAACTTAATATTTTATGATGAAGACCTGAGAGAGTGCGGCATTGATGTCGAAGAAGTGTctgtgtactcaggagtgtgcaCCCAGATTTTCAGACAGGAGTTTGGGCTGCACCTGGGGAAGGTTTTCAGTTTTGTGCACCTGAGTGTTCAGGAGTTCCTGGCTGCATTATATGCATTTCTGTCCTTCATTTGCAACAACCAAAATGTGCTGCAACACCAAGCCAAGAATGTAAGAAAGCCAACAGTGTCTAGATTCCTTAAGGTTGCCGTGGACAAGGCCTTACAGAGTGACAACGGACACCTGGACCTTTTCCTCCGCTTCGTTTTGGGTCTCTCACTGGAGTCCAATCAGATTCTCTTACGAGGGCTGCTGCCACTGACCAGAAACAGCTCTGACAGCAAAGCGAAAATAGTCACATTCATCAAAGAGAAGATCAGGAAGGCTCCCTCTCCAGAAAAAACAATCACTCTGTTCCACTGTCTGAATGAACTTAATGATCAATCTCTAGTGCAGGAAGTCCAAAAGTACCTGAGCAGAGAAGGTTCCAGTGATTTCACTGGAGGTGGGCTCTCTCCTATTCAGTGGTCAGCTGTGGCGTTTGTCCTGCTGAATTCAGAAGATGAGCTGATTGAGTTCGACCTGAGTAAATTTGACAGATCAGAAGAATGTCTTCTGAGGCTGCTGCCAGTGGTGAAAGCATCCAGGAATATTGTCCTACACTGGTGCAATATATCAGAGGAAGGTTGTGCAGCTTTGGCTTCAGTCCTCAGCTCTAACCCCTCAAGTCTGAGAGAACTGGACCTGAGTTATAATaaactgcaggattcaggactgaagctgctctctgctggactggaAAATCCAAACTGTAAACTTGAGAAACTGGTGCTGCAATGTTGCAATCTGTCAGATGAAGGCTGTGCAGCTCTGGCATTAGCTCTCAGCTCCAACTCCTCAAGTCTGAGAGAACTGGACCTGAGTTATAATGAACTGCAtgattcaggagtgaagctgctctctgctggactggaGAATCCACAgtgtaaactggagaaactggtGCTGTATGATTGTAATATATCAGAGGAAGGCTGTGCAGCTCTGgcctcagctctcagctcaaACTTCTCAAGTCTGAGAGAACTGGACCTGAGGTATAATgaactgcaggattcaggacggaagctgctctctgctgtaAAGGAGAATCCACAatgtaaactggagaaactgcaCTTTTGAGTACCTGACCTGCTTTTACAGTCTTTCCGGCATCACTTCCTGTTTATCAATGACTGCACCTGTCCATCAAGCTTCTTCTctttgtcacacacacacacacacacacacacacacacacacacacacacaccacacacacacacact

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674734.1 True 2819 mRNA 0.45 7 13580127 13590984
XM_022674735.1 False 2645 mRNA 0.45 6 13580127 13590984

Neighbor

gene id symbol gene type direction distance location
cfap58 NA coding upstream 150190 13225301 ~ 13429937 (+)
stn1 obfc1 coding upstream 733482 12837159 ~ 12846645 (+)
LOC103028459 LOC108428195,LOC108258943,LOC107566531,LOC107710590 coding upstream 746983 12818186 ~ 12833144 (+)
LOC103028151 fstl1,LOC103028151,LOC108428196,LOC108258944,LOC106575075,LOC105019681 coding upstream 764466 12785758 ~ 12815661 (+)
LOC103027506 gja8,LOC108258942,LOC107603011,LOC107566539,LOC107746070 coding upstream 812957 12762266 ~ 12767170 (+)
LOC103024001 LOC108439370,LOC108258974,LOC107758869,LOC107590749 coding downstream 39633 13630617 ~ 13665746 (+)
LOC103023667 LOC108439371 coding downstream 82314 13673298 ~ 13676357 (+)
LOC103023349 LOC108439383,LOC108258976 coding downstream 85460 13676444 ~ 13680221 (+)
LOC103047056 npy2rl,LOC108439369,LOC107758849,LOC107590775,LOC107714138,LOC107665946,LOC107692719 coding downstream 182446 13773430 ~ 13805229 (+)
eif3f eif3f,LOC107723164,LOC107758850,LOC107665937 coding downstream 330264 13921248 ~ 13927798 (+)
G103221 NA non-coding upstream 46819 13532732 ~ 13533308 (+)
G103218 NA non-coding upstream 93143 13485520 ~ 13486984 (+)
G103212 NA non-coding upstream 131679 13448212 ~ 13448448 (+)
G103178 NA non-coding upstream 218123 13361603 ~ 13362004 (+)
G103169 NA non-coding upstream 354409 13225481 ~ 13225718 (+)
G103255 NA non-coding downstream 5267 13596251 ~ 13596572 (+)
LOC111193537 NA non-coding downstream 12612 13603596 ~ 13605378 (+)
LOC111193536 NA non-coding downstream 15124 13606108 ~ 13625446 (+)
G103323 NA non-coding downstream 166862 13757846 ~ 13765466 (+)
G103347 NA non-coding downstream 276429 13867413 ~ 13868223 (+)
sh3pxd2a sh3pxd2a other upstream 547621 12851001 ~ 13032506 (+)
cryzl1 cryzl1 other upstream 1057824 12483622 ~ 12522303 (+)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 1555363 12000639 ~ 12024764 (+)
map2k7 map2k7,LOC107676852,LOC107712243 other upstream 2285312 11274746 ~ 11294815 (+)
LOC111193528 NA other upstream 2709971 10868577 ~ 10870156 (+)
G103376 zgc:77880,LOC108439367,LOC107692630,LOC107723165,LOC103363053,LOC107758853,LOC105904859,LOC107590776 other downstream 338081 13929065 ~ 13935667 (+)
G103490 LOC106510829 other downstream 669641 14260625 ~ 14261539 (+)
G103551 NA other downstream 1027651 14618635 ~ 14619082 (+)
G103561 NA other downstream 1100059 14691043 ~ 14692199 (+)
LOC103032764 LOC108443686,LOC108258285,LOC107746061,LOC107684317,LOC107566138,LOC105891017,LOC107690754,LOC107086972 other downstream 1408471 14999455 ~ 15297939 (+)

Expression


Co-expression Network