LOC103023349 (LOC108439383,LOC108258976)


Basic Information

Item Value
gene id LOC103023349
gene name LOC108439383,LOC108258976
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 13676444 ~ 13680221 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674740.1
ttgttgttTGGTAAAGACATGAATTGTGCAACATGGTTTCAGAGTCTGAGAAAAATACGTTCTCCAGTTACAGCATCCACTTCTCCATTATATAATTTACTTTATCTGGTTATGTGTAACTGTTCCTCTGGGGAATGTGGGCCAAAAATAGAATCTTAGATTTCTTCACCTCTGCACAATAGAATAGTGAGACCACACAGGCATTGAGTAACCAATTATGCATTGTTCTGCTGAGCATGTGACCTGCTTAATGACCAATACGTATGAAAATGTTCAGCACCATAATCCCCCTGCCCCTCCTCACCCTGTCTCAGGAGGGATAAAACTGTTAAGTGCCAAGCAGTCTAGAAAACGACCACGTCGGCCCTCGAGGATGGTTCTCCTGCAGTTCCTCAGTTGCTTCTTCATCGGTCTGACCACAGACGAAAACGAGAAAAACGGAAAAAAGAAGACGAAAGATGAAAAGTATGACATTTCCTTGTTTAAAAGGGGGGACCTCCTGGAGGTGCCTCGAACCCTTTTCACCCATTTTGGGATCTACCTGGGGAACAACCGTGTGGCTCACCTCATTCCAGACATCTTACCGGTTATCTCGGCTGACAAGAGTGCCATCGCCAAGATGGTGACCAACAACCGGCTGATTCTCGGAGCTATAACGAAGCAGGCCAGCGTACGTGTGGACAATGTAGATGACTTTGCCTATGGAGCAGAGATCCTGGTGAACCACATGGACGAGGTGTGCAGTCGGCCCCCGCTGGAGGGTGAGGAGGTGGCCCGCAGGGCGGAGAAGTTGCTGGGCTCAGTGGAATACAGTCTGCTGTGGTACAACTGTGAACATTACGTCATGTACTGCAGATATGGCACCAGCATGAGCTTTCAAACCTACCAGTTTTGTAAAGTGGTGAGGAAGATTGTGCTGAGTAAGATCAGCTCGGTCCTGACTCTCCTGCTGTCTCTGCTCACTTTAGTGTATCTgggctgtctgtctgtccatggTGTCCTGCTAACAGCCGTCATCCCCTTCGCCATATGGATGGCATCGTGATTGTCTTGTGTGTCGAGAGAGGGCGAGATTTACATTAATATCAGTAACTTATTACACATCATTATTAAATGCACATTATGCAGCTTCACCGATTGGTTCAGGCTGTGATTGATCACTATTTGCTAAAGGCGTTAGTGGTGCAGTTCGGAGCTAAAGGATGATCAGGAGTTCCTGATTGAACACACACAGTTCTGGTGTTATCaaaagtaatttattattatgttacgTTCAAGTGCTAAACAATAGAGATTTATGTTGTAAGAGTTATTGTTGTGCTGATTCTTCAATCTCAACTCTGTTACTTTAACTTGTTTAACAacattcacatttttaatcactgtgggcaaatattcttaaaaatgtaaaatgagtgTGAACGTGTGAAATTGcacaagaaaagacaaaataattatctttaatttttttaattacataattacagtTGCGCAGGCAAAATGCCACGCCAAGCATGTAATCAATCATTGGCAGTCTTTGTGCAAAATTGTAAAAGtggtattaattttttttccttactgtacttcaataaacatattaaatctaa

Function

NR:

description
PREDICTED: lecithin retinol acyltransferase-like

GO:

id name namespace
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674740.1 True 1607 mRNA 0.43 2 13676444 13680221

Neighbor

gene id symbol gene type direction distance location
LOC103023667 LOC108439371 coding upstream 87 13673298 ~ 13676357 (+)
LOC103024001 LOC108439370,LOC108258974,LOC107758869,LOC107590749 coding upstream 10698 13630617 ~ 13665746 (+)
LOC103043054 NA coding upstream 85460 13580127 ~ 13590984 (+)
cfap58 NA coding upstream 246507 13225301 ~ 13429937 (+)
stn1 obfc1 coding upstream 829799 12837159 ~ 12846645 (+)
LOC103047056 npy2rl,LOC108439369,LOC107758849,LOC107590775,LOC107714138,LOC107665946,LOC107692719 coding downstream 93209 13773430 ~ 13805229 (+)
eif3f eif3f,LOC107723164,LOC107758850,LOC107665937 coding downstream 241027 13921248 ~ 13927798 (+)
LOC111193619 NA coding downstream 371583 14051804 ~ 14061543 (+)
LOC103033906 LOC108258922,LOC108439361,LOC107564279,LOC107692629,LOC107665976 coding downstream 543759 14223980 ~ 14244056 (+)
LOC103031172 LOC103031172,LOC108439360 coding downstream 602706 14282927 ~ 14290159 (+)
LOC111193536 NA non-coding upstream 50998 13606108 ~ 13625446 (+)
LOC111193537 NA non-coding upstream 71066 13603596 ~ 13605378 (+)
G103255 NA non-coding upstream 79872 13596251 ~ 13596572 (+)
G103221 NA non-coding upstream 143136 13532732 ~ 13533308 (+)
G103218 NA non-coding upstream 189460 13485520 ~ 13486984 (+)
G103323 NA non-coding downstream 77625 13757846 ~ 13765466 (+)
G103347 NA non-coding downstream 187192 13867413 ~ 13868223 (+)
G103349 NA non-coding downstream 208686 13888907 ~ 13910343 (+)
G103389 NA non-coding downstream 344071 14024292 ~ 14079252 (+)
LOC111193479 NA non-coding downstream 381448 14061669 ~ 14062007 (+)
sh3pxd2a sh3pxd2a other upstream 643938 12851001 ~ 13032506 (+)
cryzl1 cryzl1 other upstream 1154141 12483622 ~ 12522303 (+)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 1651680 12000639 ~ 12024764 (+)
map2k7 map2k7,LOC107676852,LOC107712243 other upstream 2381629 11274746 ~ 11294815 (+)
LOC111193528 NA other upstream 2806288 10868577 ~ 10870156 (+)
G103376 zgc:77880,LOC108439367,LOC107692630,LOC107723165,LOC103363053,LOC107758853,LOC105904859,LOC107590776 other downstream 248844 13929065 ~ 13935667 (+)
G103490 LOC106510829 other downstream 580404 14260625 ~ 14261539 (+)
G103551 NA other downstream 938414 14618635 ~ 14619082 (+)
G103561 NA other downstream 1010822 14691043 ~ 14692199 (+)
LOC103032764 LOC108443686,LOC108258285,LOC107746061,LOC107684317,LOC107566138,LOC105891017,LOC107690754,LOC107086972 other downstream 1319234 14999455 ~ 15297939 (+)

Expression


Co-expression Network