eif3f (eif3f,LOC107723164,LOC107758850,LOC107665937)


Basic Information

Item Value
gene id eif3f
gene name eif3f,LOC107723164,LOC107758850,LOC107665937
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 13921248 ~ 13927798 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674742.1
AGCGGGGTGTGAACACTGCGGGGCAGCAGCAGGTCTGAGTGCGGTGCTGGGGCTCTGCTCTGTATCCGgtctgctgctctctctcttcctctcggAAACATGGCGGTTCACGGGCCGGTTGTGAAAATCCACCCGGTGGTTCTCGCTTCCATCGCGGACTCGTACGAGCGGAGGAACGAGGGGGCGAGCCGGGTGATCGGTACATTACTGGGAACCATAGATAAGCATTCTGTCGAAGTCACCAACTGTTTCTCCGTTCCTCACAATGAGTCAGAAGACGAGGTGGCTGTGGACATGGAGTTTGCAAAGAACATGTACGAACTTCATAAGAAGGTTTCGCCCAGTGAAGTCATCATTGGTTGGTATGCCACAGGATACgacatcacagaacattccGTGCTGATCCATGAGTACTACAGTCGGGAAGCGCAGAACCCCATCCACCTCACCGTGGACACGGCGCTGCAGAGCAACAAAATGAACATTCGTGCTTATGTCAGCGCACAGATGGGTGTTCCAGGGAAGACTGTTGGTGTGATGTTCACGCCCTTAAcagtaaaatatgtttattatgaCACAGAGCGCATTGGAGTTGATCTTCTACAAAGGACTCGTGCATCTCCCAACCGCACCAATGGCTTGACCTCAGACTTGGCTCAGGTGGGAAGTGCAGCAGGACGCATCCAGGAAATGCTGACCACAGTGCTCGCATACATTGAAGATGTCCTGTCTGGAAAGGTGATGGCTGACAACAGCGTCGGGCGCTATCTAATGGATCTGGTCAACAAAGTGCCCAAAATCCCAGCAGAGGACTTTGAGAGTATGCTCAACTCCAACATTAATgaTCTGCTGATGGTGACGTACCTGGCGAATCTCACCCAGGCTCAGATTGCTCTTAATGAAAAACTGGTTGTTCTGTAACTGAAAAATAAAGATGTGTTTATCATTCtaa
>XM_022674743.1
tgctgctctctctcttcctctcggAAACATGGCGGTTCACGGGCCGGTTGTGAAAATCCACCCGGTGGTTCTCGCTTCCATCGCGGACTCGTACGAGCGGAGGAACGAGGGGGCGAGCCGGGTGATCGGAACCATAGATAAGCATTCTGTCGAAGTCACCAACTGTTTCTCCGTTCCTCACAATGAGTCAGAAGACGAGGTGGCTGTGGACATGGAGTTTGCAAAGAACATGTACGAACTTCATAAGAAGGTTTCGCCCAGTGAAGTCATCATTGGTTGGTATGCCACAGGATACgacatcacagaacattccGTGCTGATCCATGAGTACTACAGTCGGGAAGCGCAGAACCCCATCCACCTCACCGTGGACACGGCGCTGCAGAGCAACAAAATGAACATTCGTGCTTATGTCAGCGCACAGATGGGTGTTCCAGGGAAGACTGTTGGTGTGATGTTCACGCCCTTAAcagtaaaatatgtttattatgaCACAGAGCGCATTGGAGTTGATCTTCTACAAAGGACTCGTGCATCTCCCAACCGCACCAATGGCTTGACCTCAGACTTGGCTCAGGTGGGAAGTGCAGCAGGACGCATCCAGGAAATGCTGACCACAGTGCTCGCATACATTGAAGATGTCCTGTCTGGAAAGGTGATGGCTGACAACAGCGTCGGGCGCTATCTAATGGATCTGGTCAACAAAGTGCCCAAAATCCCAGCAGAGGACTTTGAGAGTATGCTCAACTCCAACATTAATgaTCTGCTGATGGTGACGTACCTGGCGAATCTCACCCAGGCTCAGATTGCTCTTAATGAAAAACTGGTTGTTCTGTAACTGAAAAATAAAGATGTGTTTATCATTCtaa

Function

symbol description
eif3f Predicted to enable translation initiation factor binding activity. Predicted to contribute to translation initiation factor activity. Acts upstream of or within cranial skeletal system development. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation initiation factor 3 complex, eIF3m. Is expressed in female organism. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human EIF3F (eukaryotic translation initiation factor 3 subunit F).

NR:

description
PREDICTED: eukaryotic translation initiation factor 3 subunit F

GO:

id name namespace
GO:0001731 formation of translation preinitiation complex biological_process
GO:0006446 regulation of translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03249 EIF3F; translation initiation factor 3 subunit F

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674742.1 True 952 mRNA 0.51 8 13921248 13927798
XM_022674743.1 False 869 mRNA 0.50 8 13921319 13927798

Neighbor

gene id symbol gene type direction distance location
LOC103047056 npy2rl,LOC108439369,LOC107758849,LOC107590775,LOC107714138,LOC107665946,LOC107692719 coding upstream 116019 13773430 ~ 13805229 (+)
LOC103023349 LOC108439383,LOC108258976 coding upstream 241027 13676444 ~ 13680221 (+)
LOC103023667 LOC108439371 coding upstream 244891 13673298 ~ 13676357 (+)
LOC103024001 LOC108439370,LOC108258974,LOC107758869,LOC107590749 coding upstream 255502 13630617 ~ 13665746 (+)
LOC103043054 NA coding upstream 330264 13580127 ~ 13590984 (+)
LOC111193619 NA coding downstream 124006 14051804 ~ 14061543 (+)
LOC103033906 LOC108258922,LOC108439361,LOC107564279,LOC107692629,LOC107665976 coding downstream 296182 14223980 ~ 14244056 (+)
LOC103031172 LOC103031172,LOC108439360 coding downstream 355129 14282927 ~ 14290159 (+)
LOC103031792 LOC108439359,LOC107723198,LOC107564241,LOC107692626,LOC100334711 coding downstream 381128 14308926 ~ 14330415 (+)
knl1 NA coding downstream 460660 14388458 ~ 14409396 (+)
G103349 NA non-coding upstream 10905 13888907 ~ 13910343 (+)
G103347 NA non-coding upstream 53025 13867413 ~ 13868223 (+)
G103323 NA non-coding upstream 155782 13757846 ~ 13765466 (+)
LOC111193536 NA non-coding upstream 295802 13606108 ~ 13625446 (+)
LOC111193537 NA non-coding upstream 315870 13603596 ~ 13605378 (+)
G103389 NA non-coding downstream 96494 14024292 ~ 14079252 (+)
LOC111193479 NA non-coding downstream 133871 14061669 ~ 14062007 (+)
G103410 NA non-coding downstream 191940 14119738 ~ 14129753 (+)
G103464 NA non-coding downstream 271239 14199037 ~ 14199576 (+)
G103482 NA non-coding downstream 321322 14249120 ~ 14249825 (+)
sh3pxd2a sh3pxd2a other upstream 888742 12851001 ~ 13032506 (+)
cryzl1 cryzl1 other upstream 1398945 12483622 ~ 12522303 (+)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 1896484 12000639 ~ 12024764 (+)
map2k7 map2k7,LOC107676852,LOC107712243 other upstream 2626433 11274746 ~ 11294815 (+)
LOC111193528 NA other upstream 3051092 10868577 ~ 10870156 (+)
G103376 zgc:77880,LOC108439367,LOC107692630,LOC107723165,LOC103363053,LOC107758853,LOC105904859,LOC107590776 other downstream 1267 13929065 ~ 13935667 (+)
G103490 LOC106510829 other downstream 332827 14260625 ~ 14261539 (+)
G103551 NA other downstream 690837 14618635 ~ 14619082 (+)
G103561 NA other downstream 763245 14691043 ~ 14692199 (+)
LOC103032764 LOC108443686,LOC108258285,LOC107746061,LOC107684317,LOC107566138,LOC105891017,LOC107690754,LOC107086972 other downstream 1071657 14999455 ~ 15297939 (+)

Expression


Co-expression Network