LOC103031792 (LOC108439359,LOC107723198,LOC107564241,LOC107692626,LOC100334711)


Basic Information

Item Value
gene id LOC103031792
gene name LOC108439359,LOC107723198,LOC107564241,LOC107692626,LOC100334711
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 14308926 ~ 14330415 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674748.1
ATCCCCCATCACATGGAGCTACTGGCAGCTTCAATAAGAATGTCAGCCCCTGGCCTCTTGCTACTCTAAATATGAACAACTGCAACAACACAGACGACAAAAAAGACAACAAGGAGATAAAGAAAGATGATAAGAAACCAGATGAAAAAAAGGATgagaagaaagaggaaaagaaggaTGACAAGAAGGATGAGAAGAAAGACGAGAAGAAGgatgaaaaaaaagatgaaaaaaaagatgataaAAAGGATGATAAAAAGAAGGAAGAGCCACCTAAAGAGTCTTGGATAATGGATCCTGCTTCTGACCTTTACTACCACTGGCTCACGATTATATCAGTACCTGCCTTCTACAATTTGATGATGCTTATCACCAGagCCTGTTTCAATGAGCTTCAGGACAGTTACACCACGGTATGGATCACACTTGATTATTCATCAGATGTCATCTACTACATCGACACATTTGTGAGATCCAGAACAGGTTTTCTGGAGCAAGGCTTGCTGGTGAAAGATCGTAAGAAATTATGGGAAAACTACAAAAAGACGCCACAATTCAGATATGACCTGGTATCCATGATACCAACAGATATAGCAATGCTGTATGTGGGCTACAACAATCCTGAACTGAGATTTAATCGTCTTCTGAAAATGGCTCGGCTCTTTGAGTTCTTTGACCGAACAGAGACAAGGACGAACTTTCCCAACATCTTCCGCATTGGCAACCTCGTACTCTATATCCTAATCATTATTCACTGGAATgcctgcatcttttttgctatttccaAAACACTTGGATTTGGGTCAGACACATGGGTCTACCCTGACATCAGTGATCCCGAACATGGCCGTCTGGCAAGGAAATACATCTACTGCTTATACTGGTCTACACTTACCCTAACCACCATCGGAGAGACTCCACCTCCTGTTAGAGACATTGAGTACTTGTTTGTTGTCGCTGACTTTCTCATTGGTGTGCTTATATTTGCTACCATTGTTGGTAATGTAGGTGCCATGATCTCCAACATGAATGCTTCACGCGCTGAATTCCAGGCTAAAATTGATTCCATTAAGCAATATATGCAGTTTCGTAAGGTCACTAAAGATCTGGAGGCTCGTGTGGTCAAGTGGTTCGACTACCTTTGGACGGAGGAGAAGACTTGTGATGAAAAGGAAGTGCTTAAATACCTTCCGGACAAGCTAAAGGCTGAGATTGCCATTAATGTTCATTTGGAAACTCTGAGGAAGGTGCGCATCTTTCAGGACTGTGAGGCAGGACTGCTCATTGAGCTTGTGCTCAAGCTTCAACCGCAGGTTTTCAGTCCTGGAGACTACATCTGCAAGAAAGGCGACATTGGGCGTGAAATGTACATCATCAAAGAAGGTAAGCTAGCTGTGGTAGCGGATGATGGAGTGACGCAGTTTGTGGTGCTCAGTGACGGCGCCTACTTTGGTGAGATCAGCATCTTGGGCATCAAAGGCAGTAAGGCTGGGAACCGTCGTACCGCTAACATCCGGAGCGTGGGCTACTCAGACCTCTTCGCCCTCTCCAAAGACGACCTCATGGAGGCCCTGACTGAATATCCAGAAGCCAAGAAGGCTCTTGAAGAGAAGGGCAGGGCAATTCTGATGAAGGATGGCTTGATAGACGAGTCTGCAGCCAAGACAGCGGACGCTAAAGACCTAGAGGACAAAGTGTCCATGCTTGAGACCAACCTAGAAGTGATGCAGGCCAAAATGACTCGTATAACAGCAGATTGGGCAGCCAGCCAGGGCAGGATCAAGCAGAGGATCAACAACATGGAAGCCAGAGTGAAAACACTCAGGGAAGAAGACTTGTCTGAGGTGGTGGAGGATAAGAAGGGCTAATAGTTCTGTGAAGTATTAGGTTACGATAGAATTCAAGGTCAGAACTTAATTACATGAATACATTTACTGAACAGCTCCAGTTGGTGTTACCTACAGGTGTAGTGTTAAAGAACTCTGTAGAAGTGCATTTCTAAAGTAGAGAATGTTACCACATAGAAACAGTACCATCAGATACACGTCTTTAGAGTTTGGTGATTTCAAACAATGCACACATTATTTAGAACATCAGGCTGGTCATGTTAAACACATATCTTTTTATAAGAAAGAATCACGCACTCTGCCTGTGTCTTACACTCTCGGGGGAAGGTTTTTAATAACTAAGGACAGAAATGTGAGACACAGTTGTAGAGAGAAATTGGTGTGATTATCTTTTGcagaaatattgtttaaataaacacaatgtaaaaaaaactatacaggCAAATGTCTTTTATTATATTggttattacatttaattgtcTAAATCATGGTGATTTGTACCATTGTCACACTCAATCTGGCAAGTAAGCCAAAAACATAATCGTTTAATAATTGTAaaacttttacaaacatttaaagAGAAAGTACAAAATTACGTAAAATTGCATTATTAACTGGTTTAAATGTATGGTAATTTTGAGAGTGAGATGTTATGAATATGTAACATAGGCAAATTTGAACGAGCAAatacaaagataaaaaaaacttttgaaagCATCAAACACTTCATATATCTGGAATCTTTTATCACCACTGTGAAGATTCTGCAGGAGTTTCAGAGTGACATCTTAACCATTTCATTTCAGAAAGCAGTGCTATCACATTACCACTCCTCAgctttaaaattcattttggaataaaagCAGTTAGCATAAAAGGTTAAATGACAGGAGGGTTTAATGAGGGAAGGGTGTTTATAGAACACCTCAATACGACACAGACCCAGACTCTTCCCCGGCCCTGCTGAAACTGCAGACTCACTCTCTGGGCGTGATCATACTCGCTCTCTGTGAGCCAGACTCTGACTTGGTCTCAGAAGAATAAATACCTCCTGGGCTTCATTAGCAGAGATGTGTCCCTGGTAGCACTAAGGTGCTAGGTGCTAATCACACCAGCGTCTGTGCTTTTCAATTTACATCAGGGTTCTTGCactattttaatgctttttataacctttttaagacctcaataatttatttatccatttctttttttcatttttcttccaTTGTGATGCAGAACAGAGCCAACACAACATCTGTAAGATGCACTACGTCAAACAGCAGACTGAACTGCATGCAGGAACCATGAGGAATAATGAAAGAACACTTTAAAGAACTCGGTGACAGCATGCTGCTCACATTGAGCTCATTTGTAGCTTCAtgcaaatatgaaaaaaagagaaaatgttagctagctctccgctaatcttagttctctccccagtaacgttagctagctcaccgctaatgttagctatctcTGCGCTAGCATTAGTTctttccctggtaacattagctagcttcccgctaatgttagctatctcTGCGTTAGCATTAGTTCTTtctctggtaacattagctagcttcccgctaatgttagctatctcTCTGCttactttagttctctccccagtaacattagctagcttctcgctaatgttagctatctcTGCGCTAGCATTAGTTctttccctggtaacattagctagcttcccgctaatgttagctatctcTCTGTCAACTTTAGTTCTTTccccggtaatgttagctaagtcaccactaatgttagctagctcgccgctgaCATTAGCCTTAACCCTAGATCTTtcccggtaatgttagctaactcgtcACTTACGTTAGCTATTTCTCCGCTAACCCTAGTTCTCaccccgctaatgttagctatctcTCCCCTTACCTTAGTTCTGTccccggtaatgttagctacctCGTATCTATGGTTAGCtcaccttagttctctct
>XM_022674749.1
AGAGAGGGAGCACTTCCACTGCAGCCGCGGGTTAAACTCTTCTCTACAGAGGATCTGAATCAAAAACTGTATGAACTCTTCTCAGAAAAGAGCGGGAAACGGAGACGGTGAATTTAACCGCGCGCTGCTGTAGGGAAATGATGGAGTTACGGAGGAATTTGGCGCTGATTTCTCGCGGTTTCTGCGCTCAGAGGCTCTGAACTGCGGCTCAGTTTGAGGAACAGCAGGAGAGAAGATGGCCAAAATCTGCACAGAGCGATCTTACGCCACTCGCAGGTCTGCCTTTACCCCGGAGCCACGCAGCGACTGGACGGATGGAAATGACGGAATATCCCGGTTTGTGCTGACACTTGGAGGTTGGGTATCACATGGCAAACATTCAGAAAGCAGCTGTTCCAGTGCAGATGGTTCTGATGAGGCAGGGAGGGACGAGGGGAACTTAAACACCACAAATGGACAAGATCAACTCCGCAGGAGGAACTTCAATAAGAATGTCAGCCCCTGGCCTCTTGCTACTCTAAATATGAACAACTGCAACAACACAGACGACAAAAAAGACAACAAGGAGATAAAGAAAGATGATAAGAAACCAGATGAAAAAAAGGATgagaagaaagaggaaaagaaggaTGACAAGAAGGATGAGAAGAAAGACGAGAAGAAGgatgaaaaaaaagatgaaaaaaaagatgataaAAAGGATGATAAAAAGAAGGAAGAGCCACCTAAAGAGTCTTGGATAATGGATCCTGCTTCTGACCTTTACTACCACTGGCTCACGATTATATCAGTACCTGCCTTCTACAATTTGATGATGCTTATCACCAGagCCTGTTTCAATGAGCTTCAGGACAGTTACACCACGGTATGGATCACACTTGATTATTCATCAGATGTCATCTACTACATCGACACATTTGTGAGATCCAGAACAGGTTTTCTGGAGCAAGGCTTGCTGGTGAAAGATCGTAAGAAATTATGGGAAAACTACAAAAAGACGCCACAATTCAGATATGACCTGGTATCCATGATACCAACAGATATAGCAATGCTGTATGTGGGCTACAACAATCCTGAACTGAGATTTAATCGTCTTCTGAAAATGGCTCGGCTCTTTGAGTTCTTTGACCGAACAGAGACAAGGACGAACTTTCCCAACATCTTCCGCATTGGCAACCTCGTACTCTATATCCTAATCATTATTCACTGGAATgcctgcatcttttttgctatttccaAAACACTTGGATTTGGGTCAGACACATGGGTCTACCCTGACATCAGTGATCCCGAACATGGCCGTCTGGCAAGGAAATACATCTACTGCTTATACTGGTCTACACTTACCCTAACCACCATCGGAGAGACTCCACCTCCTGTTAGAGACATTGAGTACTTGTTTGTTGTCGCTGACTTTCTCATTGGTGTGCTTATATTTGCTACCATTGTTGGTAATGTAGGTGCCATGATCTCCAACATGAATGCTTCACGCGCTGAATTCCAGGCTAAAATTGATTCCATTAAGCAATATATGCAGTTTCGTAAGGTCACTAAAGATCTGGAGGCTCGTGTGGTCAAGTGGTTCGACTACCTTTGGACGGAGGAGAAGACTTGTGATGAAAAGGAAGTGCTTAAATACCTTCCGGACAAGCTAAAGGCTGAGATTGCCATTAATGTTCATTTGGAAACTCTGAGGAAGGTGCGCATCTTTCAGGACTGTGAGGCAGGACTGCTCATTGAGCTTGTGCTCAAGCTTCAACCGCAGGTTTTCAGTCCTGGAGACTACATCTGCAAGAAAGGCGACATTGGGCGTGAAATGTACATCATCAAAGAAGGTAAGCTAGCTGTGGTAGCGGATGATGGAGTGACGCAGTTTGTGGTGCTCAGTGACGGCGCCTACTTTGGTGAGATCAGCATCTTGGGCATCAAAGGCAGTAAGGCTGGGAACCGTCGTACCGCTAACATCCGGAGCGTGGGCTACTCAGACCTCTTCGCCCTCTCCAAAGACGACCTCATGGAGGCCCTGACTGAATATCCAGAAGCCAAGAAGGCTCTTGAAGAGAAGGGCAGGGCAATTCTGATGAAGGATGGCTTGATAGACGAGTCTGCAGCCAAGACAGCGGACGCTAAAGACCTAGAGGACAAAGTGTCCATGCTTGAGACCAACCTAGAAGTGATGCAGGCCAAAATGACTCGTATAACAGCAGATTGGGCAGCCAGCCAGGGCAGGATCAAGCAGAGGATCAACAACATGGAAGCCAGAGTGAAAACACTCAGGGAAGAAGACTTGTCTGAGGTGGTGGAGGATAAGAAGGGCTAATAGTTCTGTGAAGTATTAGGTTACGATAGAATTCAAGGTCAGAACTTAATTACATGAATACATTTACTGAACAGCTCCAGTTGGTGTTACCTACAGGTGTAGTGTTAAAGAACTCTGTAGAAGTGCATTTCTAAAGTAGAGAATGTTACCACATAGAAACAGTACCATCAGATACACGTCTTTAGAGTTTGGTGATTTCAAACAATGCACACATTATTTAGAACATCAGGCTGGTCATGTTAAACACATATCTTTTTATAAGAAAGAATCACGCACTCTGCCTGTGTCTTACACTCTCGGGGGAAGGTTTTTAATAACTAAGGACAGAAATGTGAGACACAGTTGTAGAGAGAAATTGGTGTGATTATCTTTTGcagaaatattgtttaaataaacacaatgtaaaaaaaactatacaggCAAATGTCTTTTATTATATTggttattacatttaattgtcTAAATCATGGTGATTTGTACCATTGTCACACTCAATCTGGCAAGTAAGCCAAAAACATAATCGTTTAATAATTGTAaaacttttacaaacatttaaagAGAAAGTACAAAATTACGTAAAATTGCATTATTAACTGGTTTAAATGTATGGTAATTTTGAGAGTGAGATGTTATGAATATGTAACATAGGCAAATTTGAACGAGCAAatacaaagataaaaaaaacttttgaaagCATCAAACACTTCATATATCTGGAATCTTTTATCACCACTGTGAAGATTCTGCAGGAGTTTCAGAGTGACATCTTAACCATTTCATTTCAGAAAGCAGTGCTATCACATTACCACTCCTCAgctttaaaattcattttggaataaaagCAGTTAGCATAAAAGGTTAAATGACAGGAGGGTTTAATGAGGGAAGGGTGTTTATAGAACACCTCAATACGACACAGACCCAGACTCTTCCCCGGCCCTGCTGAAACTGCAGACTCACTCTCTGGGCGTGATCATACTCGCTCTCTGTGAGCCAGACTCTGACTTGGTCTCAGAAGAATAAATACCTCCTGGGCTTCATTAGCAGAGATGTGTCCCTGGTAGCACTAAGGTGCTAGGTGCTAATCACACCAGCGTCTGTGCTTTTCAATTTACATCAGGGTTCTTGCactattttaatgctttttataacctttttaagacctcaataatttatttatccatttctttttttcatttttcttccaTTGTGATGCAGAACAGAGCCAACACAACATCTGTAAGATGCACTACGTCAAACAGCAGACTGAACTGCATGCAGGAACCATGAGGAATAATGAAAGAACACTTTAAAGAACTCGGTGACAGCATGCTGCTCACATTGAGCTCATTTGTAGCTTCAtgcaaatatgaaaaaaagagaaaatgttagctagctctccgctaatcttagttctctccccagtaacgttagctagctcaccgctaatgttagctatctcTGCGCTAGCATTAGTTctttccctggtaacattagctagcttcccgctaatgttagctatctcTGCGTTAGCATTAGTTCTTtctctggtaacattagctagcttcccgctaatgttagctatctcTCTGCttactttagttctctccccagtaacattagctagcttctcgctaatgttagctatctcTGCGCTAGCATTAGTTctttccctggtaacattagctagcttcccgctaatgttagctatctcTCTGTCAACTTTAGTTCTTTccccggtaatgttagctaagtcaccactaatgttagctagctcgccgctgaCATTAGCCTTAACCCTAGATCTTtcccggtaatgttagctaactcgtcACTTACGTTAGCTATTTCTCCGCTAACCCTAGTTCTCaccccgctaatgttagctatctcTCCCCTTACCTTAGTTCTGTccccggtaatgttagctacctCGTATCTATGGTTAGCtcaccttagttctctct

Function

NR:

description
PREDICTED: cyclic nucleotide-gated channel cone photoreceptor subunit alpha-like

GO: NA

KEGG:

id description
K04950 CNGA3; cyclic nucleotide gated channel alpha 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674748.1 False 3835 mRNA 0.42 6 14318198 14330415
XM_022674749.1 True 4287 mRNA 0.43 8 14308926 14330415

Neighbor

gene id symbol gene type direction distance location
LOC103031172 LOC103031172,LOC108439360 coding upstream 18767 14282927 ~ 14290159 (+)
LOC103033906 LOC108258922,LOC108439361,LOC107564279,LOC107692629,LOC107665976 coding upstream 64870 14223980 ~ 14244056 (+)
LOC111193619 NA coding upstream 247383 14051804 ~ 14061543 (+)
eif3f eif3f,LOC107723164,LOC107758850,LOC107665937 coding upstream 381128 13921248 ~ 13927798 (+)
LOC103047056 npy2rl,LOC108439369,LOC107758849,LOC107590775,LOC107714138,LOC107665946,LOC107692719 coding upstream 503697 13773430 ~ 13805229 (+)
knl1 NA coding downstream 58043 14388458 ~ 14409396 (+)
dmd LOC108439357 coding downstream 80268 14410683 ~ 14664759 (+)
LOC103039857 caly,LOC103039857,LOC108434710,LOC108258305,LOC105891014,LOC107583165,LOC107684294 coding downstream 1905613 16236028 ~ 16254238 (+)
LOC103039552 NA coding downstream 1990707 16321122 ~ 16325115 (+)
taf5 taf5,LOC102783881 coding downstream 2042375 16372790 ~ 16383498 (+)
G103495 NA non-coding upstream 7637 14300862 ~ 14301289 (+)
G103477 NA non-coding upstream 17672 14290768 ~ 14291254 (+)
G103491 NA non-coding upstream 46948 14261603 ~ 14261978 (+)
G103488 NA non-coding upstream 49500 14258824 ~ 14259426 (+)
G103485 NA non-coding upstream 54080 14254370 ~ 14254846 (+)
G103505 NA non-coding downstream 13255 14343670 ~ 14344468 (+)
LOC111193540 NA non-coding downstream 43239 14373654 ~ 14375532 (+)
G103517 NA non-coding downstream 47344 14377759 ~ 14387696 (+)
G103524 NA non-coding downstream 101497 14431912 ~ 14510140 (+)
G103533 NA non-coding downstream 144792 14475207 ~ 14475622 (+)
G103490 LOC106510829 other upstream 47387 14260625 ~ 14261539 (+)
G103376 zgc:77880,LOC108439367,LOC107692630,LOC107723165,LOC103363053,LOC107758853,LOC105904859,LOC107590776 other upstream 373259 13929065 ~ 13935667 (+)
sh3pxd2a sh3pxd2a other upstream 1276420 12851001 ~ 13032506 (+)
cryzl1 cryzl1 other upstream 1786623 12483622 ~ 12522303 (+)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 2284162 12000639 ~ 12024764 (+)
G103551 NA other downstream 288220 14618635 ~ 14619082 (+)
G103561 NA other downstream 360628 14691043 ~ 14692199 (+)
LOC103032764 LOC108443686,LOC108258285,LOC107746061,LOC107684317,LOC107566138,LOC105891017,LOC107690754,LOC107086972 other downstream 669040 14999455 ~ 15297939 (+)
G104000 NA other downstream 2120760 16451175 ~ 16458209 (+)
col17a1 col17a1,LOC108434660,LOC107684270,LOC107583183 other downstream 2133523 16463938 ~ 16507787 (+)

Expression


Co-expression Network