LOC111188171 (zc3h12c)


Basic Information

Item Value
gene id LOC111188171
gene name zc3h12c
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 16628689 ~ 16662345 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674782.1
gagtgaggaGGGGCGGCAGCGGggctgagtgagtgagggagtgagtgagtgaggagcgctgctgctgctgctgtagctccGGCAAGCTAACGCTACCTAGCAAGGTTAGCTTTATGGAGGATGCACCATGAACACGGTTCACATGACCACAGCAGTCTGAGGGGCGAGTAGCAGACGGGGCAGAGGTCAGCAGGGGTCATCGGCAGCACGGCGCTGAATGTCTCTGACAGCTTCATGGGCCTGAAGGACCATCTGGATGATGGAACAGGCCACATCCTCGACCTGGGGCTGGATCTGGACTACCTCCACGTGAAAGCCGTAGACCGGCAGGTCGGTGCCGATGCCGGTCCCAGGATGGACAGGGGTTCGTCAGATGCTGGCGAGGATTCAACCCCGTGCCCCAAAAGACCCTCTTCCTCCTCCCAGGGTGACTCAGAGGAGAGCGCTGGGTCTGATATCGAGGTGGAGCGCAGCTGCAGCCTCTCGCCCAGAGATGCCCTGAGTGAAGGATCAGCCCGAGCTGTCCACCCTCCACTCTGCCGATCGCCATGTCTGGATTTGGATTCGCCGGGGCCCCCCGACGCGACGCCGGACGAGCCCGATCCCGTCAACACCCTCAGGGAGTATCAAACCAAACTGGAGTTCGCTCTGAAGCTGGGCTACACAGAAGACTTGGTCCGACTACTTGAGCAAGCTCGACCGGACGCACTGATCAACGACATTCTCGGGGAGCTGGTGAAACTTGGCAGCAAGTCCGAGAGCGAAGGCAGCACCCAAACCTCATCCATGTCCACTACTTCTTCCTTAGCGTCTTCTGGTTCTTCATCGTCTTCAGCATGCAGCTTTTCCGATTCTACAGATTCACGGCAGTCGGATTCCCCATCTCAGGCCCTCCTGGACGATAAGGATAACCTGCGGCCCATAGTTGTGGATGGAAGTAATGTAGCCATGAGCCATGGCAATAAGGAGGTGTTCTCTTGCCAAGGAATTCAGCTTGCGGTGGACTGGTTCCTTGAACGTGGTCACAAAGACATCACAGTTTTCGTACCTGCCTGGAGGAAAGAGCAGTCTCGACCTGATGCACTCATCACAGatCAAGAGATTTTGAGACGACTGGAGAAAGACAAGATTCTTGTTTTCACACCGTCCCGTCGAGTCCAGGGCCGCAGGGTGGTGTGCTACGATGACCGATTTATCGTCAAGCTAGCTTACGAATCAGATGGAATCATTGTCTCTAACGACAACTACAGGGACTTGGCTGTGGAGAAACCTGAATGGAAGAAATTCATTGACGAAAGGCTTCTGATGTACTCGTTTGTTAATGACAAGTTCATGCCCCCTGATGATCCCTTGGGTCGCCACGGCCCAAGTCTCGAGAACTTCCTGAGAAAAAGGCCCATCATCCCAGAACACAAGAAGCAGCCTTGTCCTTATGGGAAAAAGTGCACTTACGGACACAAGTGTAAGTTCTACCACCCGGAGCGTGGCACACAACCCCAGCGCGCAGTAGCCGATGAGCTCCGTGCCAGCGCCAAGACCTCTGCCGTCAAAAACACGACTGAAACTAGCCTGGTGAAGAGCCACAGTGTTCCTGGGGGATCCCGAAACGATAAAGCCGGCGAGGGAAAGCGTTCGCACCCAAAGAGGCAGTCAGACCCCAGCGTCCGCACCCTGTCTTATAGTGATGTGGAGGACAAGCTGAGCTCCAAAACCAAAGCAGACTCCACCAAGAGCAGTGTGACACTGCCCCCTGCACCAGGTGGGCCTCCTTCCTGTCACAGTTACCTGCAAGACCCAAGAGAGCAAACCTCCTGCTCTACCAAAAGTCACGTAGCACCAGCTTTTCCACAAACGGACCCCTATCCAACCTGCGAGTCTCCGGATCACAGTTACTACTCCATGGTCCGTGCCTACTCAGGTCTTGGTCTGTCTGCACAGCGAAGCCCAGAGCGGCACTTCCACCTACCGGATGTGGATCCACGGATCAGCTCGGTTGCGTCAGATTGCAGCAGTGAGGGCAGCGCCAGCTCTGACTCGTATGGCACGGCGGGCCACAGTGAGCGCTCCTGCATGAGTTCACCCGACTCTGGACTGATGGACGATGGGCTCAAGTGCCATCAtcatctccaccaccaccagcagcaccagTACCAACATCGCAGGCAGTATCCGTTGCCTGGGACCTTGCCTCCTGGGACCTTGCCCCCAGGTACTTTGCCTCCACCCCAGCACCACCACCAGGGACGAGTGCTCTCATCAGCTCCTCCACCGCACCCTGGTTACCACCACCACAGTGTATCAAGGATCCACAGTTTGGCACAAGAAGACCAGCCGCCAGACCCCCACTTCAAGCACTCATTGTCCTACATGTCCCCGCAAGTCCAACATCAAACGGTTGCCGCCAGATCAAGCTGTCCTGGAGACTACCCACCCCTCGCACACCCTCAGAGCTCCCCTCTGGGTCGAGGTTTGGCGTCCACGCGTCTGGACAGCGTGTCTGACTCCAGGCTCTACGACCACTCGCCTCTACCACCCAGGAAGGCTTACTTGGGCCAGGAGCGAATGACCAGCTGGGATCCATACTACCGGCAAACCCCTCAGCCTTGCTATGAGCACTTCACCTTCCAGAGCCTTCCTGAGAACCGTGAGCAGATGTGGCGGGCGCCCTGGGGACGTTCTTCTCTTccccatcctcctcctcctcatccctcTCACAGTCCACATCCCCAGTCTCACCAACAGCATCAGGAGCCACCTGCCGTCAGTCGCTACCAGGAAGTGCGCGAGAAGGTGTTCGTAAACCTGTGCAACATCTTCCCTACAGAGCTGGTGCAGCTGGTCATGGGCCGGTACCCGCACGTGACCGATGCCCAACAGTTAGCGGCCGCCATCTTGGCTGAGAAAGGCCAGTCAGGCTACTGAGGGCCCTCTCGgaaactgtaaaactgttaaCCCTAATTTTACAATTTTCTAAGGAATTTGTTTGCATCTACATGGAGATTTGTCCAGGCCACGTACGCAAAGTTTTGCAGTGCTTCCGTTTAGAGGTTTCCAAAGTTCACGTGGGAACCTGTGAACGCGGCCGCAGTGAGGACAAGCCATCACAGAGTTCGTAGTTGGggtctttgttctttgtttgacTTTGTTAAGGTCACAAATTTATCCAGCAGCGGAACCAGAACCGCTGTAGTAGCAAATTTGTCTACTTGAGGTGTGAATGTGTGGCAGTGTGAGtgtggaattatttattttgatctATATATTTTCTGCAAGTTTTTTGCTTTATGTTAATACATTTGATAGTTATGTTCAGGTGAGCATGTATTGATTCACAGGGCACTTTTTTCCATTGCTGTTTATCAAATTCGGTTTGGTAACTTATGGCAATCAGGCAAGATCTGATGGAAGGCCAGATTATTTGTGATGGACAGAACAAGAAACTGGGGTGACTTAACATACCAAAATGAAGGAATCCACCACATCAaatactcaaatacacacaaaaagcGAAGGGCAGGACCctgtctgctttttttttccccttgtcATTGTCTTATAGCAAGGAATTTCAGCCTCCTGCCTTGGCAAGACTCATAAATTTTCTATTCTTTTGCATTCCTCCAGATACCATTAGTCCCGCATTTCTCTGGCCTCTCACCGTCTTTGTCTTTGTGACGTAATGCCTATTCTCACTTgaaaagtttgttttatttttaattttaattttgtgtcCTTTAAAATCGATTTCCCTTCAACCATTTCCTGTTTGAATCATGAAGGTTTGGTTCTGTGGGAATACGCACGAGTAGTAAGTATTACTTTTACTTGTAGAGTAgctgtgtttaaattattattgttgttattattgttatcattatttgctgtttctttttgttttattttcgttaAGCTTTTTTTTGCTGATGTGTTCGGTTACGAAGATACggtatgtgtgaatgtgtggttggtcatgtgcttgtgtgtgtgtgtgtgtgtgtgtatggggtacTTGGTTGAATTTTTTTCTTGTCAGTTTTACATTGAATTGTCAGTGTTACGATTCAACGGCTTGGATGTATAATATGAAAAAAGACTTCAGCCTTCAGTGGCCACCCTAAACGACAGCAGGTGTTC

Function

symbol description
zc3h12c Predicted to enable endoribonuclease activity and mRNA binding activity. Predicted to be involved in RNA phosphodiester bond hydrolysis, endonucleolytic. Predicted to be active in cytoplasmic ribonucleoprotein granule and nucleus.

NR:

description
PREDICTED: probable ribonuclease ZC3H12C

GO: NA

KEGG:

id description
K18668 ZC3H12, MCPIP; ribonuclease ZC3H12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674782.1 True 4134 mRNA 0.52 7 16628689 16662345

Neighbor

gene id symbol gene type direction distance location
LOC103036820 NA coding upstream 3105 16611601 ~ 16625584 (+)
LOC103037127 NA coding upstream 27654 16576843 ~ 16601035 (+)
LOC103038100 NA coding upstream 180200 16442958 ~ 16448489 (+)
pdcd11 pdcd11,LOC104950700 coding upstream 210277 16388056 ~ 16418412 (+)
taf5 taf5,LOC102783881 coding upstream 245191 16372790 ~ 16383498 (+)
LOC103036216 NA coding downstream 128403 16790748 ~ 16798890 (+)
LOC103035380 NA coding downstream 141563 16803908 ~ 16816495 (+)
vangl1 vangl1,LOC107552384,LOC107748077,LOC107588836 coding downstream 247303 16909648 ~ 17020202 (+)
poglut1 poglut1 coding downstream 387084 17049429 ~ 17060160 (+)
timmdc1 timmdc1 coding downstream 403057 17065402 ~ 17076913 (+)
G104001 NA non-coding upstream 82679 16544256 ~ 16546010 (+)
LOC111193544 NA non-coding upstream 191057 16433809 ~ 16437632 (+)
G103972 NA non-coding upstream 369691 16258785 ~ 16258998 (+)
G103945 NA non-coding upstream 542845 16085643 ~ 16085844 (+)
G103943 NA non-coding upstream 548529 16079730 ~ 16080160 (+)
G104082 LOC107662997,LOC107757412,LOC108434698,LOC107707084 non-coding downstream 20395 16682740 ~ 16687373 (+)
G104144 NA non-coding downstream 198643 16860988 ~ 16861202 (+)
G104151 NA non-coding downstream 264879 16927224 ~ 16934483 (+)
G104162 NA non-coding downstream 384427 17046772 ~ 17047740 (+)
G104177 NA non-coding downstream 519951 17182296 ~ 17182538 (+)
LOC103037450 NA other upstream 54256 16555694 ~ 16574433 (+)
col17a1 col17a1,LOC108434660,LOC107684270,LOC107583183 other upstream 120902 16463938 ~ 16507787 (+)
G104000 NA other upstream 170480 16451175 ~ 16458209 (+)
LOC103032764 LOC108443686,LOC108258285,LOC107746061,LOC107684317,LOC107566138,LOC105891017,LOC107690754,LOC107086972 other upstream 1330750 14999455 ~ 15297939 (+)
G103561 NA other upstream 1936490 14691043 ~ 14692199 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other downstream 226041 16888386 ~ 16894592 (+)
LOC103031769 prps2 other downstream 457502 17119847 ~ 17138973 (+)
LOC111193547 NA other downstream 744250 17406595 ~ 17419138 (+)
G104656 pcdh8 other downstream 2256715 18919060 ~ 18923203 (+)
nfkbiz nfkbiz other downstream 3071881 19734226 ~ 19744924 (+)

Expression


Co-expression Network