poglut1 (poglut1)


Basic Information

Item Value
gene id poglut1
gene name poglut1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 17049429 ~ 17060160 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674787.1
CGCACGCTGAAATGGGAACACAGGCAGACAGAAGTAGTTGAGTGTTGAAGACGCGAGCACGTTTACCGGCCAGGCAGGACTAAACGATGCACAGAAGATGGAGCTGAGGTGGATTTTAACgctgtgttgtgtttttctctTGAGTGGAGCGGAGTTTAGTGCTGCTCAGAAGGggccatatcgcccacccgtAGACACAAGATGGCAGAAATATCTGAACAAGATCTCTGAAGCAGCCAAGAAGTTTCAGCCATGCAGCCAAGAGAACTGCAGCTGCCACACCAGTGTCCTGAAAGACGACCTGCAGCTTTTCAGAAATGGCATATCAAAGGAGCTAATGCTGAACACGGTGCAGCGAGGTGTGGGAACACACTACCAGGTTATCGGGCACAAGCTCTACCGAGAACAGGACTGCATGTTCCCGGCAAGgtgcaGTGGAGTGGAGCATTTTATCCTGGAAGTGATTGACAGATTGCCTGATATGGAGATGGTCATTAATGTTCGGGACTACCCTCAGGTGCCTGCATGGTCTCAGCAGCTGCTGCCTGTTCTGTCCTTTAGCAAGACACCAGACTACCGGGATATCATGTACCCTGCGTGGACGTTTTGGGAGGGAGGTCCTGCAGTGTGGCCTATTTATCCCACTGGACTGGGACGGTGGGACCTGATGAGAGATGACCTGAAAAAATCAGCTGCTCAGTGGCcctggaaaaagaaaagttcCAAAGGATTCTTTAGGGGCTCCAGAACTAGTCCAGAGAGAGACCCTTTAGTACTACTTTCCAGAGAGGCTCCTGACCTGGTGGATGCAGAATATACAAAGAACCAGGCCTGGAAATCTGAGAAGGACACTCTGGGAAGACCACCAGCCAAAGAAATTCCGCTCGTAGACCACTGTGAATACAAGTACCTCTTTAATTTCCGTGGAGTAGCAGCCAGCTTCCGCCTCAAGCACCTGTTCCTCTGCGGTTCCTTGGTGTTCCACGTCGGGGAGGAGTGGCTGGAGTTCTTTTACCCTCAGCTCAGGCCCTGGGTTCACTACATCCCTGTCAGACAAGACCTTACTGACCTCAGGGAGCTGCTGCAGTTCGTCAAGGAAAATGACAAAGTGGGAGAAGCTATTGCAATAAGAGGTCAGGCGTTCATACAGGATCACCTGCGTATGGAAGACGTGTCCTGCTACTGGGAAAGGCTCCTCACCGACTTCAGCAAGCTCCTCACATACAAGCCTAAGCGCAAATCCAACTACAAGCAGGTCACTCACAAGCCCAGTAGGTCTGAACTGTGAACGGTGGACAGTCTGGAGTATCTGAACCTGAAGATTGtaacagtgctgcaggtcaaaccaGTAAGCCACTGGCTTTGGCACTGGTTTAAGCCCTTCTTAAAGTTGAAGGGACCCTGAGCTATTACAGACTGTCCATTAGCATTCATAGCATTTATAggttcatagtagttactgagcAATAAGTCTTAAGATTAATAGCTGAATAAATAGATGCTTTTTGACCCTGGTAAATCAATACTAAAGGCAGCTCTTCATAATGAATCGAATGTTCGGTGCCCAAAGCTCTCATCAGAAGCCAGAAATTGAGGTTTAAATaggaaataaatacataaataaatgtggtGGACCCATTTACACATTGCTCTTTCCTACAgtgcatttgtttatttatcgtACTCTGTCTATGGCTGCTTATGACTGTAATGTCTCTACATACTTAGTAAAGGCAGCTTTCTGAAGGCA

Function

symbol description
poglut1 Predicted to enable UDP-glucosyltransferase activity and UDP-xylosyltransferase activity. Predicted to be involved in positive regulation of Notch signaling pathway and protein O-linked glycosylation. Predicted to be active in endomembrane system. Human ortholog(s) of this gene implicated in Dowling-Degos disease and autosomal recessive limb-girdle muscular dystrophy type 2Z. Orthologous to human POGLUT1 (protein O-glucosyltransferase 1).

NR:

description
protein O-glucosyltransferase 1

GO: NA

KEGG:

id description
K13667 POGLUT1, RUMI, KTELC1; EGF-domain serine glucosyl/xylosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674787.1 True 1750 mRNA 0.48 11 17049429 17060160

Neighbor

gene id symbol gene type direction distance location
vangl1 vangl1,LOC107552384,LOC107748077,LOC107588836 coding upstream 29227 16909648 ~ 17020202 (+)
LOC103035380 NA coding upstream 232934 16803908 ~ 16816495 (+)
LOC103036216 NA coding upstream 250539 16790748 ~ 16798890 (+)
LOC111188171 zc3h12c coding upstream 387084 16628689 ~ 16662345 (+)
LOC103036820 NA coding upstream 423845 16611601 ~ 16625584 (+)
timmdc1 timmdc1 coding downstream 5242 17065402 ~ 17076913 (+)
LOC103032412 gk,LOC107742635,LOC107700103,LOC107667651 coding downstream 21041 17081201 ~ 17109560 (+)
LOC103032094 NA coding downstream 53150 17113310 ~ 17117221 (+)
chst10 chst10 coding downstream 82373 17142533 ~ 17149608 (+)
lonrf2 lonrf2 coding downstream 122853 17183013 ~ 17199615 (+)
G104162 NA non-coding upstream 1689 17046772 ~ 17047740 (+)
G104151 NA non-coding upstream 114946 16927224 ~ 16934483 (+)
G104144 NA non-coding upstream 188227 16860988 ~ 16861202 (+)
G104082 LOC107662997,LOC107757412,LOC108434698,LOC107707084 non-coding upstream 362056 16682740 ~ 16687373 (+)
G104001 NA non-coding upstream 503419 16544256 ~ 16546010 (+)
G104177 NA non-coding downstream 122136 17182296 ~ 17182538 (+)
G104183 LOC103030517,LOC108434725,LOC100705727,LOC101474240,LOC102192248,LOC103374257,LOC106510766 non-coding downstream 294269 17354429 ~ 17356491 (+)
G104190 NA non-coding downstream 421964 17482124 ~ 17485186 (+)
G104196 NA non-coding downstream 536988 17597148 ~ 17597444 (+)
G104204 NA non-coding downstream 641527 17701687 ~ 17701919 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 154837 16888386 ~ 16894592 (+)
LOC103037450 NA other upstream 474996 16555694 ~ 16574433 (+)
col17a1 col17a1,LOC108434660,LOC107684270,LOC107583183 other upstream 541642 16463938 ~ 16507787 (+)
G104000 NA other upstream 591220 16451175 ~ 16458209 (+)
LOC103032764 LOC108443686,LOC108258285,LOC107746061,LOC107684317,LOC107566138,LOC105891017,LOC107690754,LOC107086972 other upstream 1751490 14999455 ~ 15297939 (+)
LOC103031769 prps2 other downstream 59687 17119847 ~ 17138973 (+)
LOC111193547 NA other downstream 346435 17406595 ~ 17419138 (+)
G104656 pcdh8 other downstream 1858900 18919060 ~ 18923203 (+)
nfkbiz nfkbiz other downstream 2674066 19734226 ~ 19744924 (+)
G105276 NA other downstream 3929113 20989273 ~ 21055483 (+)

Expression


Co-expression Network