LOC103032036 (LOC108258971,LOC108434686,LOC107588835,LOC107667659,LOC107742634,LOC107739811,LOC107700106,LOC107552381)


Basic Information

Item Value
gene id LOC103032036
gene name LOC108258971,LOC108434686,LOC107588835,LOC107667659,LOC107742634,LOC107739811,LOC107700106,LOC107552381
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 18192698 ~ 18214872 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674813.1
GATCCGGGTGCAGTTACACACGTGTGTCTCCTGCATGAGAAACATTAGGGTTTGTGCACGTGTGTGCGGCTTTACTTCTGTTCAGAGTCTCTGATGGATGATGTCAAGCTTTAAATCGTAACCGGGGAACAAGATGAAGTTTTCATACAAGTTTTCCAACTTGCTGGGAGCTGTTTATCGACACGGCAATCTTTCCTTCTCTAAAGATGGAAACTCGGTCATCAGTCCTGTTGGAAATCGAGTCTCTGTTTTTGACCTAAAAAACAATAAGTCTGAGACTCTGCCAGTGAGCACCAACAAGAACATTACCTCCGTCGGTCTCTCACCTGATGGGAATCTGGCCATTCTTGTGGATGAAGATGGAGCGGCGGTACTGGTTAGCTTGGTGACTCGAGCTGTGCTTTACCATCATCACTTCCACAAACCTGTTCACAGCGTCTCCTTTTCTCCTGATGGAAGgaAGTTTGTGGTGACGAAGGAGAATGTGGTTCTGATGTACCACGCCCCAGGAAAGAACCGAGAGTTCAACGCATTCGTTCTGGATAAGAGTTACTACGGACCGTACGATGAGACAACCTGCATTGACTGGACCGACGATTCCAAGTGTTTTGCGGTGGGCAGTAAAGACATGAGCACATGGATATTTGGAGCAGAACGATGGGCTAATCTGATCTATTACTCTCTGGGGGGCCACAGAGATATCATCGTGGGCTGCTTTTTTGAGAAGGACAGTCTAGATCTGTACACAGTGAGTCAGGATggcactctgtgtgtgtgggagagcgACGCAGAGCTGGAAGATTTACGCAAAGGCTCCAGATACCTGGAACGGAAGAagatggaggaggagaggaagagacgGGCGGAGGAAGAGGCTCATGATGATAATGAAGAAGACTGTGACGTTGTGGAGCTGGGAGAAGATGGGGAGCCGAGGGGTGAGGTGATTAAAGGTAGTGCGGACTCACCTCAAGAAGTGGAGGGGATCAAAAATGTCCGCTTCAAGCAGAAAAGCAAACACTTTTTCAGCACTGAGGGTATCTGTGGTAACCTGACAGCAGCCGCTTTCCACAAGGACATGCACATCCTGGTGACGGGCTTCGCTTCTGGAGCCTTCCACCTGCATGAGCTGCCTGAATTTAacctcattcactctctcagTATATCTGATCAGAGGATTTCAGCCATTGTTATGAACCcaacaggagactggattggcTTTGGATGTTCAGGTCTTGGGCAGCTGCTGGTTTGGGAGTGGCAGAGTGAGTCGTATGTGTTTAAGCAGCAGGGCCATTTCAACAACATGGCCTCTCTGGCCTATTCTCCTGACGGACAGTACCTGGCCACTGGAGGGGATGATGGGaaggtaaAAGTGTGGAACACCACCAGTGGCCTGTGCTTTGTTACATTCACAGAGCACACGAGCAGCGTCACCAACGTCACGTTCACCAATAGCGGTTTTGTGGTGGTCAGCGCCTCTATGGACGGCACTGTCCGAGCCTTTGATCTGCACAGATATCGTAACTTCCGGACGATGACGTCTCCACGGCCGACGCAGTTCTCCTCCCTGGCAGTGGACGTGAGTGGAGAGCTGGTGTGTGCTGGAGCTCAGGACTCCTTCGAGATCTTCCTCTGGTCCATGCAGACGGGACGGCTGCTGGAGGTGTTGAGTGGTCATGAGGGTCCGGTGAGTTGCCTGTGCTTCAGTCCGGTGCAGTCTGTGCTGGCCAGTGCATCGTGGGATAAAACGGTCCGACTGTGGGAAATGCTGGACAGCTGGCAGACTCGAGAGATCCTGCGCCTCACCTCTGATGGTCTGACAGTGACGTATCGTCCGGATGGTCAGGAGCTGGCAGTGGCTACTCTGGATGGAGAAATCACGTTCTGGAACCCTCAGGAGGCAACACAGACCGGCTCCATCATCGGTCGCCATGACCTTCAGATGGGTCGCAAAGAGACCGATAAAATCACGGCCAAACAGTCAGCCAAGGGCAAGGCCTTCACTTCTCTGTGTTATTCTGCTGACGGCGAGTCACTGTTAGCTGGTGGTCGTTCAAAGTTTGTCTGCATTTACAACATCAAGGAGCAGATCCTCATGAAGAAGTTTGAGATCTCCTGCAATATGTCGCTGGATGCTATGGAGGAATTCCTAGACAGACGTAAGATGACAGAGTTTGGTAGTCTGGCGTTAGTGGACGAGGGAGcaggagatggagatggagttCATCTTACCCTGCCTGGAGTTAAAAGAGgtGACATGAGTTCACGTCACTTCAAGCCAGAGATCCGTGTCACATCCCTCCGCTTCTCGCCCACTGGACGCAGCTGGGCAGCAGCTTCTACTGAAGGTTTACTCATCTATTCCCTGGATGCCTCATTGGTGTTTGACCCCTATGATCTGGACATGGACATTACGCCCACCAGCATACGCCGTCAGCTGAAGAAGAAGGAGTGGGCTTCGGCCATCGTCCTCGCTTTCCGTCTGAACGAAACCTCTCTGATCAGTGAAGTGCTGGAAGCAGTACCTTATGACCAAGtggcTGTGGTGTCCAGCTCCCTGCCAGATGTGTACGTGGAGAAGCTGCTAAACTTTGTGGCCTCGTCTCTAGAGAAGTCCAGGCACCTGCAGTTCTACCTCACCTGGGCCCAAAACCTTCTCACCTTACACGGGCAGAAACTCAAGAGCAGGTCAACAACAATGCTACCGACCATACAGCAGCTGTTGAAGAGCCTCCAGAAACACCATGACGACCTGTCCAAACTATGTGATTGGAACATCTACACTATTCGCTACGCCAAGGCCCTTTCCAAACAGAGAGGTATGAAGAGGACAGTGGAGGATTCACTCAGTGAAGAAGGGGATGGGTCAGAGATCATGGGCTcagaggatgaggaggaagaggaagaagaggataTGATGAGCGAGCCGATCCTTTTGGCCTGACCTTATTAGAGGGGTGTTGGAAAACAGCTTTGTTGGACTGAACTGATGAAGATTGCTGTTGTTGTGGTCTTACAATTGGCCACTGGAACCCACTTGTTATCGATTATATTTTGTTATCGATGCACCCATTAAGATTTTTGTACTGTATGCTATCTAAGAGATGTTTGtgttaaaaagtcattaaaatgtttaaactttttttttttataaacaata

Function

NR:

description
PREDICTED: periodic tryptophan protein 2 homolog

GO:

id name namespace
GO:0000028 ribosomal small subunit assembly biological_process
GO:0055123 digestive system development biological_process

KEGG:

id description
K14558 PWP2, UTP1; periodic tryptophan protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674813.1 True 3163 mRNA 0.50 21 18192698 18214872

Neighbor

gene id symbol gene type direction distance location
LOC103032361 gpm6ba,LOC108434682,LOC108259029,LOC107552377,LOC107588840,LOC107654257,LOC107667658 coding upstream 110236 18009302 ~ 18082462 (+)
gemin8 gemin8 coding upstream 186187 17998315 ~ 18006511 (+)
LOC103027494 NA coding upstream 229980 17950021 ~ 17962718 (+)
hsf2bp LOC106595116 coding upstream 247973 17934859 ~ 17944725 (+)
ing1 ing1 coding upstream 296261 17892761 ~ 17896437 (+)
LOC111193482 NA coding downstream 121273 18336145 ~ 18337262 (+)
arhgap6 arhgap6 coding downstream 189634 18404506 ~ 18566714 (+)
mid1 mid1,LOC103030906,LOC106575281,LOC106574413 coding downstream 427836 18642708 ~ 18742642 (+)
LOC103031642 ednrb,LOC108434743,LOC105911940,LOC106569465,LOC107658690,LOC107566659 coding downstream 574651 18789523 ~ 18808162 (+)
LOC103031957 LOC103031957 coding downstream 612407 18827279 ~ 18858363 (+)
G104446 NA non-coding upstream 1488 18188710 ~ 18191210 (+)
G104448 NA non-coding upstream 21940 18170546 ~ 18170758 (+)
G104445 NA non-coding upstream 97542 18094043 ~ 18095156 (+)
G104383 NA non-coding upstream 200249 17924950 ~ 17992449 (+)
G104392 NA non-coding upstream 200551 17970934 ~ 17992147 (+)
G104474 NA non-coding downstream 224 18215096 ~ 18215471 (+)
G104478 NA non-coding downstream 734 18215606 ~ 18216090 (+)
G104482 NA non-coding downstream 30763 18245635 ~ 18246339 (+)
G104483 NA non-coding downstream 42725 18257597 ~ 18279808 (+)
G104499 NA non-coding downstream 147160 18362032 ~ 18448106 (+)
LOC111193547 NA other upstream 773560 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 1053725 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 1298106 16888386 ~ 16894592 (+)
LOC103037450 NA other upstream 1618265 16555694 ~ 16574433 (+)
col17a1 col17a1,LOC108434660,LOC107684270,LOC107583183 other upstream 1684911 16463938 ~ 16507787 (+)
G104656 pcdh8 other downstream 704188 18919060 ~ 18923203 (+)
nfkbiz nfkbiz other downstream 1519354 19734226 ~ 19744924 (+)
G105276 NA other downstream 2774401 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 2804166 21019038 ~ 21028990 (+)
G105357 NA other downstream 3112320 21327192 ~ 21369204 (+)

Expression


Co-expression Network