LOC111193549


Basic Information

Item Value
gene id LOC111193549
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 19057398 ~ 19067487 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674829.1
ATCATGCCCACAGTTTTACAGTGAACGATGTGAAAGTGCTGCTTTTCTCTGCCACGCCTCTTTCGTGAACTCTCTCTTGTGTGTGAAAAGGGCTTTGATATCCCAGCAGAAAGCAGAAGTGTTTCCCCCTTTGgcagaaaacagaaaatgctCGGATTTATGTACTATTTTGGCCGCATTGGCAAAGAAGAGACGGAGCTTTTACTGGAGAAACACGGTGTAGATGGGAGCTTTCTCCTCAGAGACAGCCAGAGCGTGCGAGGAGCTTATTGCCTTTGcgtgagGAAAGCTCCATTTGTCCACACTTACAGGATTGAGACTTCTTCTAAAGGTTGGGCCGTTGAGACTATCAACAGAGAGAAGCCACAGTGGTTTAAGTCCCTTGATAAGCTCATTGAGTGCTACAGAAATCGCACACCTCAAAATATGGTTCCCCTTCTGTACCCTCTAGAGAAAACACACCTGATTAAGGAGGAGAGAAGGAACACAGaACAACTGGTCTACTTGGAGATATGAGGAGCTAACATAATCCACGGAGACCCTCAGAGACCCTCAGTGTGTGTACAAAACATTCAAAGCATCACATTTTCCTCACACATTGTTTTTGTtccattatttaaacaaataattgaGCGAATTGTTGTCTTTAATCAATTCATTAATTTTGGCTTAACTGTTTAGTCTAGCTGTTTAGTATTAATTAAGTTTACTCCAAGATTACTTACTCCAATGAGTTGTGTTTGCTGACCGAAGCTTCTATGAAAACATTCCACAAGATGGCAGCAAGGCTcttaaaataaatggttttttttttatgtgtttattaaattacCTATAATGATCCTGGATCTGCACTGAAATTCAAATAGTtgagtatagtatatatattataatatattatataatatagagtggtagtattgtaaaaaaaaaaaaagttttatttgggAAAAAAAGTTATATCATTACAATAACtcagtgtacagtacagtgaaaaTTAGCTCAGATTGTGTAGCATGTGTCGCACAATTATGCTTTGAAGCTCATGTCTTTGTTCTTGACATATAATCACAAAAATATACCTTGAGGTAACAAAACAATTTCAGATGCAATGCCAAAAAGTGAGGAATTTCCCTCCTGTCCTTGTAGGAATGTGTTGGGAAATGTGTAGAGCACAGCCACTATAAGAGGACAGATGAAGACGATGTGTGATAAGTAGTTCATGTTAAGGGAATGAACAGGAAAGCAGAATGAGGTGCTTTAGGCCTCATCTATATGTTTTcagatatttcttaaaaaagagATTCCCCTTGAAAtttccttaaaaatatattgataatatatatatatatacaatatccAAAAAAAGTGAGGGCACTTTTCACATTTCCTCGAATATTTGATTATATACAGGTTGTATAGCAGTGTCCTTTGAAAATAACttaacacacagccattaatatcCAAATAGCTGGCAACACAAGTACACCCCCCAAGGGGAACATttccaaattgtgcccaatttTGTAACTGTCCATTTCTGGTGTCGTCTGACTTGTTAGAGTCACAAGGCTTCTGTTGTGAATGGAGAGCACAGCTGTTAATTTTGGTGTTTTAGGTACAAttctctcatactggccactggatattcaacatggcacttcatggcaaagaactctctgaaaatttaagaaatataatTGTTGTTCTTCAAAAAAGATGGCCTAGGCTATAGGAAGGTTGTtaacatcattttttaagtatgaAGACTTTGGAAGGTCAGTAtgcagtgctcagaccatagGACACACAATGCATCAACTTGTTCTGCAAGGCCGTCATTCTAGAAGGCTGCCTcatctgaagctgatgcacaagaaagcctgcaaacagtttgctgaagactAGAAGTTCAACAGATACTGGATCATGGATTACTGAAACCATGTCCTGTGGTCTGATGAGGCCAAGATAACCCTGTTTTGCTCAGATGGTGCCGGTTGaagaacaatattaaaaataatgacacTTTGGGCATTAATGGCTGTGGGTTGAGTTATGGGACTGTAAACCTATACTGCTATACAAGCTTTATACTGACTACTCAAAAgttatatacacatttaatttctataatgttctataatgTTCAATGAAGAAGAACAAAAACACATGGGTTTAATCCCAAATTAAACACTACTCCCTGTGTAGTACTCTGTGCATGTATGGCTGtgcagtatattgtaaatattaatgtatgcaaaccattttatacaatataaaaatatagccATATCCTAACATCGCTCCTGCTGTGCCAGTTACCTTCTAAGTGTGATTTCCTTcccaaaaaaatgtgtgtgaatTATGTTGTACAAACTTTGTAATTAAAGAAACATCATAACAAACGTTTTAA

Function

GO: NA

KEGG:

id description
ko04142 Lysosome

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674829.1 True 2416 mRNA 0.37 4 19057398 19067487

Neighbor

gene id symbol gene type direction distance location
LOC103024880 NA coding upstream 6482 19033405 ~ 19050916 (+)
LOC103033226 NA coding upstream 34477 19014406 ~ 19022921 (+)
LOC103024565 LOC108434738 coding upstream 44432 19008566 ~ 19012966 (+)
sugt1 sugt1,LOC104941757 coding upstream 161867 18860729 ~ 18895531 (+)
LOC103031957 LOC103031957 coding upstream 199035 18827279 ~ 18858363 (+)
LOC103025512 fgf14,LOC108434733,LOC108258297,LOC105911936 coding downstream 101396 19168883 ~ 19309236 (+)
LOC103035666 LOC108434719 coding downstream 341820 19409307 ~ 19411213 (+)
LOC103025817 LOC108434731,LOC106575534,LOC106575594 coding downstream 345533 19413020 ~ 19419379 (+)
LOC103036301 pspc1,LOC108258933,LOC108434730 coding downstream 357896 19425383 ~ 19457166 (+)
LOC103036999 LOC108434729 coding downstream 415139 19482626 ~ 19532872 (+)
G104680 NA non-coding upstream 26087 19031017 ~ 19031311 (+)
G104666 NA non-coding upstream 28033 19027152 ~ 19029365 (+)
G104667 NA non-coding upstream 30812 18998535 ~ 19026586 (+)
G104660 NA non-coding upstream 101345 18941098 ~ 18956053 (+)
G104658 NA non-coding upstream 127005 18930035 ~ 18930393 (+)
G104702 NA non-coding downstream 51167 19118654 ~ 19120266 (+)
G104706 NA non-coding downstream 80217 19147704 ~ 19150962 (+)
G104712 NA non-coding downstream 137939 19205426 ~ 19205714 (+)
G104729 NA non-coding downstream 255521 19323008 ~ 19323230 (+)
G104798 NA non-coding downstream 466547 19534034 ~ 19534314 (+)
G104656 pcdh8 other upstream 134195 18919060 ~ 18923203 (+)
LOC111193547 NA other upstream 1638260 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 1918425 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 2162806 16888386 ~ 16894592 (+)
LOC103037450 NA other upstream 2482965 16555694 ~ 16574433 (+)
nfkbiz nfkbiz other downstream 666739 19734226 ~ 19744924 (+)
G105276 NA other downstream 1921786 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 1951551 21019038 ~ 21028990 (+)
G105357 NA other downstream 2259705 21327192 ~ 21369204 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other downstream 3187598 22255085 ~ 22283453 (+)

Expression


Co-expression Network