LOC103025817 (LOC108434731,LOC106575534,LOC106575594)


Basic Information

Item Value
gene id LOC103025817
gene name LOC108434731,LOC106575534,LOC106575594
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 19413020 ~ 19419379 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674834.1
tagaaccctgcgGGATTCCATCAAATGTGCTAAACCAATCGACATTGCCAAATATCAATAATAGGTACAAGTACCTCagtcttttttaatattacagcAGTAGCTGAGATCTGAGGGGGAAAGCCTACTCACTGAGCTGTAACTacacttaaagcagtttaaagcagttactgtATTGTTATGCCgaatatacagtttatattcGCATTGCAGTCCATAATATGACACTACTGTTTTTCACCAACAGGTGTATATATTTCAAGCCCTAGTCGATGGATTTATTACTCACAAAACAGCATTGTAGCTAGAAAACGTAAAGCATGGGTGACTGGAGCTTTCTGGGGAGGCTGTTGGAAAATGCACAGGAACACTCAACGGTCATTGGGAAAGTCTGGTTGACAGTCCTCTTCATCTTCAGGATCCTGGTTTTGGGTGCTGCTGCAGAGGAAGTGTGGGGGGACGAGCAGTCAGACTTTACGTGTAACACGCAGCAGCCTGGTTGTGAGAATGTATGCTATGATGAGGCCTTCCCAATCTCACACATTCGCTTCTGGGTGCTACAGATCATCTTTGTGTCCACACCTACTCTCATTTACCTGGGCCATGTACTTCACATTGTCCGGATGGAGGAAAAACGcaaggagaaagaggaggaacTGCGCAAGGCCAGTAGATTTCAGGAAGAGAAAGATCTCTACAGGAATGGGGGCGCAGGAGGAGCAGGCGATGGAGGCGGTGGCAGTGGCAAAAAAGAGAAGCCTCCAATACGAGATGAGCATGGCAAAATCCGGATCAGAGGTGCTCTCCTGCGCACCTACATTTTCAATATTATTTTCAAAACTCTGTTTGAAGTGGGGTTCATCTTGGGCCAGTATTTCCTTTATGGGTTCCAACTTAGGCCCCTTTACAAATGTGCAAGGTGGCCCTGCCCAAACACAGTGGACTGCTTTATCTCCAGGCCCACAGAAAAgaccatttttattatatttatgctTGTGGTGGCTTGTGTGTCTCTTGTGCTGAACCTTTTAGAAATCTATCATCTGGGATGGAAAAAAGTCAAGCAGGGTGTGACCAACAAGTTTGTGCCAGAGCATGAATCTCTACCCTACAACGCTAATGAACCTGGAAGGGTTGATGATGTCACAATCCTCCCTGTGGTCAGCTCATCTCCACCTGTCTTTAACCAGCCTCCCAACTATGCAGATATGGCCATTTTGGGAAGCAATGCAATCCAGCCCTCAACAACCTTAGCTCTAGTACCCACAGCTGAGGCAGAGTGCAAGGCTGATCCACTTAATGATGTTCCTCAATCCTTCCTATACAACAGCAATTACAACAGCAACAACTACCATCTGACAATGGAGCAAAACTGGGCTAACAAGATGGCTGAGTTACAGAAAAATGAAACGAAGCCCCCAAATTCAAGCCTTACTTCCTCATCGTCCTGCTCCTCCttaagcaaccacttggaaagcAGAGATTCCGTTCGCCCTTCCTCTATCTGCACTGCTGATTTTCTCAGTGATGGGAGAAGTGAACCAGACATTGGGCCTGTTTTTACCACCACCACTGCAGAGATGCATCAACCGCCTGTTACAATGACTGATATTTGTCATTTGAGCAGAGCCAGCAAAATAGGCAGCATCAGGGCTAGACCTGACGACTTGGCAGTCTAGTCGAGCCTATCAGTACATTGAAGATAAAATTCAGGACTTTAATGGGAGGGTGCTGCAACTGTCAAGTCCTGTCTAACAAATCTAGTACCAGCACATGACCCAAGCATCACAAACGGTGCAAAACCCCTCGTGAACACGTTTACGAGCATGATGAAGGAAAAGCAAACTGAccctgtttaaaataaaagaggGAAAGCTTTTAGCTTGTTAATTCTATTTCAGTTTTTGGCAAAGTTTGGCAGAGGTATGCACTTTCATTTTTGTAACACATGTTTGAGCTCCACCATTCTGTGCCTTGGTGTGTCAGTGTCACTACACTTTTACTCGACGTCTGTCCAGCTGTTATGGCCTATATCTGACCCTCTGTAAATCcacaaaagaccaaaaaaaaaaaactaatgaggagCATATTCACTGTGAGATGTCATTAACAGACTCGGATTAGCAAACATGAAGTTGAGCTGAGCCTACAGAATATGCAAGCTAGGGTGCTGTAGCTCTGTCATATAACTGGGAAGTGTGTGCCTGACATGCCAGAGTCATGTTATGATTGTCCTTAAGAATATGCAGTATTTGCTATTATTGCAGTTTCATCAGGGGTAAATAGATATAAATATCATAACTAAACaatatgtgtacatatatacagtatataaatacaatcatatGAATAACTATGAATATAACTGGTTGCAGTGTGATTGCAGCATAGAGGCCTTTCTTGTAAGCAGCAATAATACTCGAGATTTATCCTGTAAATAGAGGCTCATGTGTGAATATAGCTGTGGCAGAGATAATGCTATAGTACTATTGCTAGATAGAGTGAGTAGTTAGAAAAGGTTTGAGGCAAGATTTGAGGCATTGATAGTATTTGTCTTTGTATTTAGGCAATTTGAAGAATATTGTGAAAAGATTTTGAGAATTTCCCTGTAACTATAAATTCCTGccagtttttaaacaaaaatggcTTAATCCACAAAATTATCTTTCTCACTGACCTCCCTTTAGTTTACTTTTccagttattttgtttttacattgaggAGGTGGTTTTACATGGGAAGCAGTTTTAGCCTAAAATGACACCAGTAATATAAGCTGTGACTTAAATGTTAGAGATCagctataaaatatttactattGATATCAGATCTACAGATTAATAATGCTATTCTGATCAGTTACATTGCCAGGACAATATATATGCATATTGTAATTTTGACTAGTTGTATGTTACCATATCAGTT

Function

NR:

description
PREDICTED: gap junction alpha-3 protein-like

GO:

id name namespace
GO:0010644 cell communication by electrical coupling biological_process
GO:0055008 cardiac muscle tissue morphogenesis biological_process
GO:0003161 cardiac conduction system development biological_process
GO:0055085 transmembrane transport biological_process
GO:0008016 regulation of heart contraction biological_process
GO:0048050 post-embryonic eye morphogenesis biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005921 gap junction cellular_component
GO:0055077 gap junction hemi-channel activity molecular_function

KEGG:

id description
K07612 GJA3, CX46; gap junction alpha-3 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674834.1 True 2925 mRNA 0.42 2 19413020 19419379

Neighbor

gene id symbol gene type direction distance location
LOC103035666 LOC108434719 coding upstream 1807 19409307 ~ 19411213 (+)
LOC103025512 fgf14,LOC108434733,LOC108258297,LOC105911936 coding upstream 103784 19168883 ~ 19309236 (+)
LOC111193549 NA coding upstream 345533 19057398 ~ 19067487 (+)
LOC103024880 NA coding upstream 362104 19033405 ~ 19050916 (+)
LOC103033226 NA coding upstream 390099 19014406 ~ 19022921 (+)
LOC103036301 pspc1,LOC108258933,LOC108434730 coding downstream 6004 19425383 ~ 19457166 (+)
LOC103036999 LOC108434729 coding downstream 63247 19482626 ~ 19532872 (+)
LOC103026133 LOC108434715 coding downstream 143300 19562679 ~ 19576104 (+)
LOC103040050 LOC108434714,LOC108258858 coding downstream 158910 19578289 ~ 19591937 (+)
LOC103034347 LOC108429797,LOC108258862 coding downstream 174930 19594309 ~ 19607808 (+)
G104729 NA non-coding upstream 89790 19323008 ~ 19323230 (+)
G104712 NA non-coding upstream 207306 19205426 ~ 19205714 (+)
G104706 NA non-coding upstream 262058 19147704 ~ 19150962 (+)
G104702 NA non-coding upstream 292754 19118654 ~ 19120266 (+)
G104680 NA non-coding upstream 381709 19031017 ~ 19031311 (+)
G104798 NA non-coding downstream 114655 19534034 ~ 19534314 (+)
G104799 NA non-coding downstream 115077 19534456 ~ 19536048 (+)
G104809 fdx1,LOC108434718,LOC108259004,LOC102789999 non-coding downstream 124324 19543703 ~ 19558989 (+)
G104811 NA non-coding downstream 140654 19560033 ~ 19560591 (+)
G104841 NA non-coding downstream 270721 19690100 ~ 19690589 (+)
G104656 pcdh8 other upstream 489817 18919060 ~ 18923203 (+)
LOC111193547 NA other upstream 1993882 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 2274047 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 2518428 16888386 ~ 16894592 (+)
LOC103037450 NA other upstream 2838587 16555694 ~ 16574433 (+)
nfkbiz nfkbiz other downstream 314847 19734226 ~ 19744924 (+)
G105276 NA other downstream 1569894 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 1599659 21019038 ~ 21028990 (+)
G105357 NA other downstream 1907813 21327192 ~ 21369204 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other downstream 2835706 22255085 ~ 22283453 (+)

Expression


Co-expression Network