LOC103039332 (LOC108429797,LOC108258862)


Basic Information

Item Value
gene id LOC103039332
gene name LOC108429797,LOC108258862
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 19660005 ~ 19684150 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674836.1
ACTAAAATGTGCTTGTTCCATATAGAATTTTTACTGTGTGCAATGGCAACAGAAAAGCAGGGCAGTTCTGAAGATGTTTCTTCTTCTGGTGAAAGcagTAAACCACTGGAGGGGCTGTTCCACAGCCATTTAGAGGAGAGGGTTCGTCCTTTAATCGACCTGATTGATTCTCTGAGGCAGCTTGGTATTGAAGAAGATTTAGCTCTACCAAGTATAGCAGTGATTGGAGATCAGAGCTCTGGGAAAAGCTCAGTGTTGGAGGCTTTATCTGGAGTGGCCTTACCTCGAGGAAGTGGTATTGTTACCAGATGCCCTCTAGAGCTTAAGCTGAGGAAAATCAAAGGTGGAGTTCAATGGCGAGCTACCATATCTTACAGAGATGAGTACATTGAGTTTGATGACCCATCCTTGGTTGGAACTTATGTTGAAGAAGCCCAGAATGAACTGGCTGGAGATGGAGTTGGAATATGTGATGATCTCATCACACTGGAGATCATGTCTCCTGATGTGTGTGATCTCACACTGATCGATCTCCCTGGAATCGCAAGAGTTCCTGTGAAAGGTCAGCCTGACGATATTGGAGATCAGATTAAAAGTCTCATACGAAGCTTCATTGAGAAAGAACAAACTATCAATTTAGTGGTGGTCCCATGCAACGTGGACATTGCAACCACAGAGGCACTGAGAATGGCACAGGAAGTGGACCCTGAGGGAAAAAGAActctggcCATTCTAACTAAGCCAGACCTTGTTGACAAAGGAACAGAGAAAAACATACTGGATATAGTCAACAATCAGGTTATCCCTTTAAGTAAGGGATACATCATTGTTAAATGCCGTGGCCAAAGGCAGATTGATGATAAGGTCTCTCTGGCGGAGGCTACTCGAGTGGAGAAAGAATTCTTCAAACGTCATGAATACTTCAGATGCCTTCTGAATGAAGAGAAAGCAACGGTTCAGTGTCTCGCCACCAAACTGACTCAAGATCTGGTCGACCACATTAAAaaatCACTGCCTCTGCTTTCAGAGCAGATAAGGAAGCAGCTGTGGGACTGTAGAAAGGAGATGGGTCAATGTGAACCTGGCCCACCACTTGATCCACAAAAGAGGAAAGACTTTTTGATTACAacCATGATGAAATTTAATGACAAGATCAACCGCCTGTCGACTGGAGACGCAGGTAATAATGACAACTTGTTTGTTGAGCTCCGGTCAGAGTTCAAAAAGTGGAACGAATATCTTGAGAGCACAAAAACCTCATTTCACGAGACGGTCCAGACTATAATGAAAGAATACGACCTGAAATACAGAGGAAGAGAGCTGCCTGGCTTCAGCGattataatgtgtttgagaCGGCGGTGCAGATACTTGTGGTCAAACTGAAGGGACCAGCTATTGAGACACTCAGGATCATCAAAGACACAATCCAGAAACAGTTCTCAGAGGCATCCAGAGCCTGCTTTAACAACTACCCTTTCCTCCAGTGTGTTGCAACGaacaaaatagaaaacattCAGTCAAGACAAGAAGCCAAAGTGGAGCAGAGGATCCTGGAGCAGTTTGAAATGGAGGAACTGGTCTACACTCAGGATGGAATCTACTTCAAAACCTTAAATGAGACTCAGCCTGTTATGGATGGGCAGAAACCTTCAGAGGATAATTGTGCTAACCTTGACAGCAGAAGCAATTATCCTGATATGCTGAAAGCCTATTATGAGATCATAGTGCAGCGATTGGCCGACCAGGTGCCCATGCTAATCCGATACTTCATGCTGAAGGAATTTGCTCATCTGCTCTGCAAAGAGATGCTGGGATTACTGGATGGAGCCAATGTTGTTGAGGCTCTGCGGGAGGAGTCAGAAGTCAGCAGACGTCGGGTCTCCACTCAGAACCGCGTGGACCGTCTCACCATCGCTCAAGAGAAACTCAGCAACTTTGTTTGAAGAAGAGATTTGATCCGAGTTAGCACTTTAGGTGCAGCAACTTTTATTCCAGTACATTTGTATGTCAGTAAagtactgtgtttatttaccatatatattgatatatattacacacacaatagCTGTTTTTAGCGCACAATATACTGTCTAAGCATTTATTCTAGTAAAcaattatattgtaattttagaaTAATTTATGGCcgtaatatatatagtatatatatatatactagtccTCTAAGTCTTCTCTTTACTGCTGATTAGTCTGGATTAGTCCATGTTAAGATGAACTGTTGCcaggtgttgccatgtgggccagccagacctcttcctgtaccattttttttttcttcagtttatgAGTGTGTAGGAAACATCTGtattttctctaaagaaaagacatataatattaataattacagaattatctttgttttatgtatttctaGTTACAGTTTTTGACAGCCGCAGAGAAACGTTTGTGATGGAAATTTATTTCATTAAGGTGATTCACAATCAATAAGGAGGGTAAATTATTCCTTAATCATGTATGCAATTGTGACTGGAGATACGTGACTAACTGCAGAGATTAGAATGTGGGTCCGTGTCTCACATGGGCGTGCAGGACAGGTGACCACATGATCACATCCCTTGGGCATCAACCATAAAACATACGTGGCACAAGTTACTGACCAGTGCATTGGAAGGTTCTGGAAGCTACGTGTATCTAAAGGACCAGACTGGTCAAGACTGGCCAGGTGATGTACAGAGAGACATGGACTTTTACCATATAAGGCAATGGCCTGAGGGGACCTAAAAAGGTACAAATACGCTGAGATGTTGGCAGTACGGGGGGAGAGACTTTTTAACGTATTCTGTCTTTTCTCCAATTAAATAATTGCCCCTCACTTGTCACTAATCTTTGTTTTCCAACACATGTTTACcagaatacatttaaatacattttctacattCTAAATAAAGCAACACACCTACTTCATACATTTGCCAAATAGTTAATTTCCTTCACAGATTCACATTTTGTTGTCACAAACCTGGATCAATATCGACTAAATCTTCCAAACCACTAACACATATTCACTGTTCCAGAGCTACACGTAGTCAATCACAGTGCAACCACTGTCAAAATGctattactgttgttttttataatgttttaaaacatttttacttaagTGTAAACATATTTTGGCAACATATTTTCCATATCTTTGAATGATACTTATAATATAGACCTATAGAGTACACAAAAATTGTCTGTGGCAGTCGTTCAAC
>XM_022674837.1
AGGTTGCTGACGGCAGAGTGAATTTTTACTGTGTGCAATGGCAACAGAAAAGCAGGGCAGTTCTGAAGATGTTTCTTCTTCTGGTGAAAGcagTAAACCACTGGAGGGGCTGTTCCACAGCCATTTAGAGGAGAGGGTTCGTCCTTTAATCGACCTGATTGATTCTCTGAGGCAGCTTGGTATTGAAGAAGATTTAGCTCTACCAAGTATAGCAGTGATTGGAGATCAGAGCTCTGGGAAAAGCTCAGTGTTGGAGGCTTTATCTGGAGTGGCCTTACCTCGAGGAAGTGGTATTGTTACCAGATGCCCTCTAGAGCTTAAGCTGAGGAAAATCAAAGGTGGAGTTCAATGGCGAGCTACCATATCTTACAGAGATGAGTACATTGAGTTTGATGACCCATCCTTGGTTGGAACTTATGTTGAAGAAGCCCAGAATGAACTGGCTGGAGATGGAGTTGGAATATGTGATGATCTCATCACACTGGAGATCATGTCTCCTGATGTGTGTGATCTCACACTGATCGATCTCCCTGGAATCGCAAGAGTTCCTGTGAAAGGTCAGCCTGACGATATTGGAGATCAGATTAAAAGTCTCATACGAAGCTTCATTGAGAAAGAACAAACTATCAATTTAGTGGTGGTCCCATGCAACGTGGACATTGCAACCACAGAGGCACTGAGAATGGCACAGGAAGTGGACCCTGAGGGAAAAAGAActctggcCATTCTAACTAAGCCAGACCTTGTTGACAAAGGAACAGAGAAAAACATACTGGATATAGTCAACAATCAGGTTATCCCTTTAAGTAAGGGATACATCATTGTTAAATGCCGTGGCCAAAGGCAGATTGATGATAAGGTCTCTCTGGCGGAGGCTACTCGAGTGGAGAAAGAATTCTTCAAACGTCATGAATACTTCAGATGCCTTCTGAATGAAGAGAAAGCAACGGTTCAGTGTCTCGCCACCAAACTGACTCAAGATCTGGTCGACCACATTAAAaaatCACTGCCTCTGCTTTCAGAGCAGATAAGGAAGCAGCTGTGGGACTGTAGAAAGGAGATGGGTCAATGTGAACCTGGCCCACCACTTGATCCACAAAAGAGGAAAGACTTTTTGATTACAacCATGATGAAATTTAATGACAAGATCAACCGCCTGTCGACTGGAGACGCAGGTAATAATGACAACTTGTTTGTTGAGCTCCGGTCAGAGTTCAAAAAGTGGAACGAATATCTTGAGAGCACAAAAACCTCATTTCACGAGACGGTCCAGACTATAATGAAAGAATACGACCTGAAATACAGAGGAAGAGAGCTGCCTGGCTTCAGCGattataatgtgtttgagaCGGCGGTGCAGATACTTGTGGTCAAACTGAAGGGACCAGCTATTGAGACACTCAGGATCATCAAAGACACAATCCAGAAACAGTTCTCAGAGGCATCCAGAGCCTGCTTTAACAACTACCCTTTCCTCCAGTGTGTTGCAACGaacaaaatagaaaacattCAGTCAAGACAAGAAGCCAAAGTGGAGCAGAGGATCCTGGAGCAGTTTGAAATGGAGGAACTGGTCTACACTCAGGATGGAATCTACTTCAAAACCTTAAATGAGACTCAGCCTGTTATGGATGGGCAGAAACCTTCAGAGGATAATTGTGCTAACCTTGACAGCAGAAGCAATTATCCTGATATGCTGAAAGCCTATTATGAGATCATAGTGCAGCGATTGGCCGACCAGGTGCCCATGCTAATCCGATACTTCATGCTGAAGGAATTTGCTCATCTGCTCTGCAAAGAGATGCTGGGATTACTGGATGGAGCCAATGTTGTTGAGGCTCTGCGGGAGGAGTCAGAAGTCAGCAGACGTCGGGTCTCCACTCAGAACCGCGTGGACCGTCTCACCATCGCTCAAGAGAAACTCAGCAACTTTGTTTGAAGAAGAGATTTGATCCGAGTTAGCACTTTAGGTGCAGCAACTTTTATTCCAGTACATTTGTATGTCAGTAAagtactgtgtttatttaccatatatattgatatatattacacacacaatagCTGTTTTTAGCGCACAATATACTGTCTAAGCATTTATTCTAGTAAAcaattatattgtaattttagaaTAATTTATGGCcgtaatatatatagtatatatatatatactagtccTCTAAGTCTTCTCTTTACTGCTGATTAGTCTGGATTAGTCCATGTTAAGATGAACTGTTGCcaggtgttgccatgtgggccagccagacctcttcctgtaccattttttttttcttcagtttatgAGTGTGTAGGAAACATCTGtattttctctaaagaaaagacatataatattaataattacagaattatctttgttttatgtatttctaGTTACAGTTTTTGACAGCCGCAGAGAAACGTTTGTGATGGAAATTTATTTCATTAAGGTGATTCACAATCAATAAGGAGGGTAAATTATTCCTTAATCATGTATGCAATTGTGACTGGAGATACGTGACTAACTGCAGAGATTAGAATGTGGGTCCGTGTCTCACATGGGCGTGCAGGACAGGTGACCACATGATCACATCCCTTGGGCATCAACCATAAAACATACGTGGCACAAGTTACTGACCAGTGCATTGGAAGGTTCTGGAAGCTACGTGTATCTAAAGGACCAGACTGGTCAAGACTGGCCAGGTGATGTACAGAGAGACATGGACTTTTACCATATAAGGCAATGGCCTGAGGGGACCTAAAAAGGTACAAATACGCTGAGATGTTGGCAGTACGGGGGGAGAGACTTTTTAACGTATTCTGTCTTTTCTCCAATTAAATAATTGCCCCTCACTTGTCACTAATCTTTGTTTTCCAACACATGTTTACcagaatacatttaaatacattttctacattCTAAATAAAGCAACACACCTACTTCATACATTTGCCAAATAGTTAATTTCCTTCACAGATTCACATTTTGTTGTCACAAACCTGGATCAATATCGACTAAATCTTCCAAACCACTAACACATATTCACTGTTCCAGAGCTACACGTAGTCAATCACAGTGCAACCACTGTCAAAATGctattactgttgttttttataatgttttaaaacatttttacttaagTGTAAACATATTTTGGCAACATATTTTCCATATCTTTGAATGATACTTATAATATAGACCTATAGAGTACACAAAAATTGTCTGTGGCAGTCGTTCAAC

Function

NR:

description
PREDICTED: interferon-induced GTP-binding protein Mx3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674836.1 True 3240 mRNA 0.41 13 19660103 19684150
XM_022674837.1 False 3235 mRNA 0.41 14 19660005 19684150

Neighbor

gene id symbol gene type direction distance location
LOC103026741 LOC108429797 coding upstream 11894 19623428 ~ 19648111 (+)
LOC103034347 LOC108429797,LOC108258862 coding upstream 52197 19594309 ~ 19607808 (+)
LOC103040050 LOC108434714,LOC108258858 coding upstream 68068 19578289 ~ 19591937 (+)
LOC103026133 LOC108434715 coding upstream 83901 19562679 ~ 19576104 (+)
LOC103036999 LOC108434729 coding upstream 127133 19482626 ~ 19532872 (+)
LOC103039009 NA coding downstream 4810 19688960 ~ 19703422 (+)
cep97 cep97 coding downstream 29426 19713576 ~ 19727108 (+)
eed eed coding downstream 96805 19780955 ~ 19791604 (+)
hikeshi hikeshi,LOC106574699 coding downstream 108724 19792874 ~ 19798191 (+)
ccdc81 NA coding downstream 115443 19799593 ~ 19822020 (+)
G104811 NA non-coding upstream 99414 19560033 ~ 19560591 (+)
G104809 fdx1,LOC108434718,LOC108259004,LOC102789999 non-coding upstream 101016 19543703 ~ 19558989 (+)
G104799 NA non-coding upstream 123957 19534456 ~ 19536048 (+)
G104798 NA non-coding upstream 125691 19534034 ~ 19534314 (+)
G104729 NA non-coding upstream 336775 19323008 ~ 19323230 (+)
G104841 NA non-coding downstream 5950 19690100 ~ 19690589 (+)
G104891 rpl24,LOC107575619,LOC107551103,LOC107751658,LOC107662676 non-coding downstream 22496 19706646 ~ 19710814 (+)
LOC111193552 NA non-coding downstream 97979 19782129 ~ 19782686 (+)
G104921 NA non-coding downstream 129233 19813383 ~ 19863419 (+)
G104944 NA non-coding downstream 262693 19946843 ~ 19947441 (+)
G104656 pcdh8 other upstream 736802 18919060 ~ 18923203 (+)
LOC111193547 NA other upstream 2240867 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 2521032 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 2765413 16888386 ~ 16894592 (+)
LOC103037450 NA other upstream 3085572 16555694 ~ 16574433 (+)
nfkbiz nfkbiz other downstream 50076 19734226 ~ 19744924 (+)
G105276 NA other downstream 1305123 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 1334888 21019038 ~ 21028990 (+)
G105357 NA other downstream 1643042 21327192 ~ 21369204 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other downstream 2570935 22255085 ~ 22283453 (+)

Expression


Co-expression Network