LOC103026741 (LOC108429797)


Basic Information

Item Value
gene id LOC103026741
gene name LOC108429797
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 19623428 ~ 19648111 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674838.1
ATATAGAATTTTTACTGTGTGCAATGGAGACAAAAAAACAGGGCAGTTCTGAAGATGTTGCTTCTTCTGGTGAAAGcagTAAACCACTGGAGGGGCTGTTCCACAGCCATTTAGAGGAGAGGGTTCGTCCTTTAATCGACCTGATTGATTCTCTGAGGCAGCTTGGTATTGAAGAAGATTTAGCTCTACCAAGTATAGCAGTGATTGGAGATCAGAGCTCTGGGAAAAGCTCAGTGTTGGAGGCTTTATCTGGAGTGGCCTTACCTCGAGGAAGTGGTATTGTTACCAGATGCCCTCTAGAGCTCAAGCTGAGGAAAATTAAAGGTGGAGTTCAATGGCGAGCTACCATATCTTACAGAGATGAGTACATTGAGTTTGATGACCCGTCCTTGGTTGAAACGTATGTTGAAGAAGCCCAGAATGAACTGGCTGGAGATGGAGTTGGAATATGTGATGATCTCATCACACTGGAGATCATGTCTCCTGATGTGTGTGATCTCACACTGATCGATCTCCCTGGAATCGCCAGAGTTCCTGTGAAAGGTCAGCCTGACGATATTGGAGATCAGATTAAAAGTCTCATACAAAGCTTCATTGAGAAAGAACAAACTATCAATTTAGTGGTGGTCCCATGCAACGTGGACATTGCAACCACAGAGGCACTCAGAATGGCACAGGAAGTGGACCCTGAGGGAAAAAGAActctggCCATTCTAACTAAGCCAGACCTCGTTGACAAAGGAACAGAGAAAAACATACTGGATGTAGTCAAAAATCAGGTTATCCCTTTAAGTAAGGGATACATCATTGTTAAATGCCGTGGCCAAAGGCAGATTGATGATAAGGTCTCTCTGGCAGAGGCTACTCGAGTGGAGAAAGAATTCTTCAAACGTCATGAATACTTCAGATGCCTTTTGAATGAAGAGAAAGCAACGATTCAGTGTCTCGCCACCAAACTGACTCAAGATCTGGTCGACCACATCAAAaaatCACTGCCTCTGCTTTCAGAGCAGATAAGGAAGCAGCTGTGGGACTGTAGAAAGGAGATGGGTCAGTGTGAACCTGGCCCACCACTTGATCCACAAAAGAGGAAAGACTTTTTGATTACAacCATGATGAAATTTAATAACAAGATCAACCGCCTGTCGACTGGAAGCGCAGGTAATAATGACAACTTGTTTGTTGAGCTCCGGTCAGAGTTCAAAAAGTGGAACGAATATCTTGAGAGCACAAAACCCTCATTTCACGAGACGGTGCAGACTATATTAAGAGAATACGACGAGAAATACAGAGGAAGAGAGCTGCCTGGCTTCAGCGattataatgtgtttgagaCGGCGGTGCAGATACTTGTGGTCAAACTGAAGGGACCAGCTATTGAGACACTCAGGATCATCAAAGACACAATCCAGAAACAGTTCTCAGAGGCATCCAGAGCCTGCTTTAACAACTACCCTTTCCTCCAGTGTGTTGCAATGaacaaaatagaaaacattCAGTCAAGACAAGAAGTCAAAGTGGAGCAGAGAATCCTGGAGCAGTTTGAAATGGAGGAACTGGTCTACACTCAGGATGGAATCTACTTCAAAACCTTAAAAGAGACTCAGCCTGTTATGGATGGTCAGAAAGCTTCAGAGGATAATTGTGCTAACTTTGACAGCAGAAGCAATTATTCTGATATGCTGAAAGCCTATTATGAGATCGTAGTGCAGCGATTGGCCGACCAGGTGCCCATGCTAATCCGATACTTCATGCTGAAGGAATTTGCTCATCTGCTCTGCAAAGAGATGCTGGGATTACTGGATGGAGCCAATGTTGTTGAGGCTCTGCGGGAGGAGTCAGAAGTCAGCAGACGTCGGGTCTCCACTCAGAACCGCATGGACCGTCTCACCATCGCTCAAGAGAAACTTAGCAACTTTGTTTGAAGAAGACATTTTGATCCGAATGACCACTTTAGGTGCAGCAACTTTAATTCCAGTACATTGCTGGGAAATATTTGAAATAGTTTAATATGAattatgtttgtttaattaatacatGTTAGCCCTATATTACTAAATAGTTATtgagaaattaataaacacatttccacATTGTAGAAATAATAGACGATAACTTTGAAACGCATATCATgtttcacagtatatttgatcttaaCAACACAGAGACAAtcatcctgcatcagtaaaatgtttatttcctta

Function

NR:

description
PREDICTED: interferon-induced GTP-binding protein Mx3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674838.1 True 2204 mRNA 0.43 13 19623428 19648111

Neighbor

gene id symbol gene type direction distance location
LOC103034347 LOC108429797,LOC108258862 coding upstream 15620 19594309 ~ 19607808 (+)
LOC103040050 LOC108434714,LOC108258858 coding upstream 31491 19578289 ~ 19591937 (+)
LOC103026133 LOC108434715 coding upstream 47324 19562679 ~ 19576104 (+)
LOC103036999 LOC108434729 coding upstream 90556 19482626 ~ 19532872 (+)
LOC103036301 pspc1,LOC108258933,LOC108434730 coding upstream 166262 19425383 ~ 19457166 (+)
LOC103039332 LOC108429797,LOC108258862 coding downstream 11894 19660005 ~ 19684150 (+)
LOC103039009 NA coding downstream 40849 19688960 ~ 19703422 (+)
cep97 cep97 coding downstream 65465 19713576 ~ 19727108 (+)
eed eed coding downstream 132844 19780955 ~ 19791604 (+)
hikeshi hikeshi,LOC106574699 coding downstream 144763 19792874 ~ 19798191 (+)
G104811 NA non-coding upstream 62837 19560033 ~ 19560591 (+)
G104809 fdx1,LOC108434718,LOC108259004,LOC102789999 non-coding upstream 64439 19543703 ~ 19558989 (+)
G104799 NA non-coding upstream 87380 19534456 ~ 19536048 (+)
G104798 NA non-coding upstream 89114 19534034 ~ 19534314 (+)
G104729 NA non-coding upstream 300198 19323008 ~ 19323230 (+)
G104841 NA non-coding downstream 41989 19690100 ~ 19690589 (+)
G104891 rpl24,LOC107575619,LOC107551103,LOC107751658,LOC107662676 non-coding downstream 58535 19706646 ~ 19710814 (+)
LOC111193552 NA non-coding downstream 134018 19782129 ~ 19782686 (+)
G104921 NA non-coding downstream 165272 19813383 ~ 19863419 (+)
G104944 NA non-coding downstream 298732 19946843 ~ 19947441 (+)
G104656 pcdh8 other upstream 700225 18919060 ~ 18923203 (+)
LOC111193547 NA other upstream 2204290 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 2484455 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 2728836 16888386 ~ 16894592 (+)
LOC103037450 NA other upstream 3048995 16555694 ~ 16574433 (+)
nfkbiz nfkbiz other downstream 86115 19734226 ~ 19744924 (+)
G105276 NA other downstream 1341162 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 1370927 21019038 ~ 21028990 (+)
G105357 NA other downstream 1679081 21327192 ~ 21369204 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other downstream 2606974 22255085 ~ 22283453 (+)

Expression


Co-expression Network