LOC103034347 (LOC108429797,LOC108258862)


Basic Information

Item Value
gene id LOC103034347
gene name LOC108429797,LOC108258862
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 19594309 ~ 19607808 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674839.1
aatatttgataatagaAGTATAATGAAGTACATTTAATCTGGGGTTTTGTTTGTTGAGACTTTTAGATGCTAGATGATTATTTCAGCTGACTTCAGCCACACCTATTTATTTGAAATCCAAAGACATACCTGAAAACCCCAACCTTATAACCTTGGAAATTCCAATGCAGAACGTTCAGTTTCAGATTCAGTGTTGCACTTTTGGCACTGCCTCCGACTGCGAGTGCTTATATATGGCCATACATTGAGTGTACTTTCAGTTCAGTTGTATCAGGTTGCTGAAGGCAGAGTGGTaggtaaaataattttacagtcTTATAATGCTAAGCTAATATAATACACACAGATGCTGTTGCACAGTTTTAAAGCTACTCAAATGTGCTTGTTCCATATAGAATTTTTACTGTGTGCAATGGAGAAAGAAAAGCAGGGCAGTTCTGAAGATGTTTCTTCTTCTGGTGAAAGCAGTAAACCACTGGAGGGGCTGTTCCACAGCCATTTAGAGGAGAGGGTTCGTCCTTTAATCGACCTGATTGACTCTCTGAGGCAGCTTGGTATTGAAGAAGATTTAGCTCTACCAAGTATAGCAGTGATTGGAGATCAGAGCTCTGGGAAAAGTTCAGTGTTGGAGGCTTTATCTGGAGTGGCCTTACCTCGAGGAAGTGGTATTGTTACCAGATGCCCTCTAGAGCTCAAGCTGAGGAAGCTCAAAGGTGGAGTTCAATGGCGAGCTACCATATCTTACAGAGATGAGTACATTGAGTTTGATGACCCATCCTTGGTTGGAACTTATGTTGAAGAAGCCCAGAATGAACTGGCTGGAGATGGAGTTGGAATTTGTGATGATCTCATCACACTGGAGATCATGTCTCCTGAAGTGTGTGATCTTACACTGATCGATCTCCCTGGAATCGCCAGAGTTCCTGTGAAAGGTCAGCCTGACGATATTGGAGATCAGATTAAAAGTCTCATACGAAATTTTATTGAGAAAGACCAAACCATCAATTTAGTGGTGGTCCCATGCAACGTGGACATTGCAACCACAGAGGCACTCAGAATGGCACAAGAAGTGGACCCTGAGGGAAAAAGAActctggCCATTCTAACTAAGCCAGACCTTGTTGACAAAGGAACAGAGAAAAACGTACTGGATATAGTCAAAAATCAGGTTATCCCTTTAAGTAAGGGATACATCATTGTTAAATGCCGTGGCCAGAAGCAAATTGATGATAAGGTCTCTCTGGCGGAGGCTACTCGAGTGGAGAAAGAATTCTTCAAACGTCATGAATACTTCAGATGCCTTTTGAATGAAGAGAAAGCAACAATTCAGTGTCTCGCCACCAAACTGACTCAAGACCTGGTCGACCACATCaaaAAATCACTGCCTCTGCTTTCAGAGCAGATAAAGAAGCAGCTGTGGGACTGTAGAAAGGAGATGGGTCAGTGTGAACCTGGCCCACCACTGGATCCACAAAAGAGGAAAGACTTCTTAATTACAATCATGATGAAATTTAATGACAAGATTAACCGCCTGTCGACTGGAGACGCAGGTAATAATGACAACTTGTTTGTTGAGCTCCGGTCAGAGTTCAGAAAGTGGAAGGAACATCTTGACAGCACAAAAACCTCATTTCACGAGACGGTCCAGACAATAATGAAAGAATACGACCAGAAATACAGAGGAAGAGAGCTGCCTGGCTTCAGCGattataatgtgtttgagaCGGTGGTGCAGATACTTGTGGTCAAACTGAAGGGACCGGCTATTGAGACACTCAGGATCATCAAAGAAACAATCCAGAAACAGTTCTCAGAGGCATCCAGAGCCTGCTTTAACAACTACCCTTTCCTCCAGTGTGTTGCAACGaacaaaatagaaaacattCAGTCAAAGCAAGAAGCCAAAGTGGAGCAGAGGATCCTGGAGCAATTTGAGATGGAGGAACTGGTCTACACTCAGGATGGAATCTActttaaaacaatgaatgaaacaCAGCTTGTTATGGATGGGCAGAAAGCTTCAGAGGATAATTGTGCTAACCTTGACAGCAGAAGCAATTACCCTGATATGCTGAAAGCCTATTATGAGATCGTAGTGCAGCGATTGGCCGACCAGGTGCCCATGCTAATCCGATACTTCATGCTGAAGGAATCAACTCATCTGCTCTGCAAATAGATGCTGGGGTTGCTGGATGGAGCCAATGTTGTTGAGGCTCTGCGGGAGGAGTCAGAAGTCAGCAGACGTCGTATCACCACTCAGAACCGCGTGGACCGTCTCACCATCGCTCAAGAGAAGCTCAGCAACTTTGTTTAAAGAAGAGATTTGATCCGAGTTAGCACTTTAGGTGCACCAATGTTTATTACAGTACATTTGTATGTCAGAAAAGTACTGtgcttatttttatatatatatatatattaacatataatacaaacacacatgatAGTTGTTTTAACACACAATATTCTGTCTGAGGATTTATTCTAATAAACGATTCTAttgtaattttataataattcatgccactaaaataatgataca

Function

NR:

description
PREDICTED: interferon-induced GTP-binding protein Mx3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674839.1 True 2542 mRNA 0.42 13 19594309 19607808

Neighbor

gene id symbol gene type direction distance location
LOC103040050 LOC108434714,LOC108258858 coding upstream 2372 19578289 ~ 19591937 (+)
LOC103026133 LOC108434715 coding upstream 18205 19562679 ~ 19576104 (+)
LOC103036999 LOC108434729 coding upstream 61437 19482626 ~ 19532872 (+)
LOC103036301 pspc1,LOC108258933,LOC108434730 coding upstream 137143 19425383 ~ 19457166 (+)
LOC103025817 LOC108434731,LOC106575534,LOC106575594 coding upstream 174930 19413020 ~ 19419379 (+)
LOC103026741 LOC108429797 coding downstream 15620 19623428 ~ 19648111 (+)
LOC103039332 LOC108429797,LOC108258862 coding downstream 52197 19660005 ~ 19684150 (+)
LOC103039009 NA coding downstream 81152 19688960 ~ 19703422 (+)
cep97 cep97 coding downstream 105768 19713576 ~ 19727108 (+)
eed eed coding downstream 173147 19780955 ~ 19791604 (+)
G104811 NA non-coding upstream 33718 19560033 ~ 19560591 (+)
G104809 fdx1,LOC108434718,LOC108259004,LOC102789999 non-coding upstream 35320 19543703 ~ 19558989 (+)
G104799 NA non-coding upstream 58261 19534456 ~ 19536048 (+)
G104798 NA non-coding upstream 59995 19534034 ~ 19534314 (+)
G104729 NA non-coding upstream 271079 19323008 ~ 19323230 (+)
G104841 NA non-coding downstream 82292 19690100 ~ 19690589 (+)
G104891 rpl24,LOC107575619,LOC107551103,LOC107751658,LOC107662676 non-coding downstream 98838 19706646 ~ 19710814 (+)
LOC111193552 NA non-coding downstream 174321 19782129 ~ 19782686 (+)
G104921 NA non-coding downstream 205575 19813383 ~ 19863419 (+)
G104944 NA non-coding downstream 339035 19946843 ~ 19947441 (+)
G104656 pcdh8 other upstream 671106 18919060 ~ 18923203 (+)
LOC111193547 NA other upstream 2175171 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 2455336 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 2699717 16888386 ~ 16894592 (+)
LOC103037450 NA other upstream 3019876 16555694 ~ 16574433 (+)
nfkbiz nfkbiz other downstream 126418 19734226 ~ 19744924 (+)
G105276 NA other downstream 1381465 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 1411230 21019038 ~ 21028990 (+)
G105357 NA other downstream 1719384 21327192 ~ 21369204 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other downstream 2647277 22255085 ~ 22283453 (+)

Expression


Co-expression Network