tmco3 (tmco3)


Basic Information

Item Value
gene id tmco3
gene name tmco3
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 20463644 ~ 20488290 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674848.1
aagtttaatattttattattaactgcCATTTTcacttgtttaacacttaaacAAATAATGACAGCGAGCTCCGGTTATTTAATGCACCCTTAATCAACAATTAATCaagaaaaacaagtgaaaacccccaaaaatgtgggtcagcgcatgcgcagtgtcgttaggaagcacatatcgatgggtagcacaactcggcAGAACACCCGGCAGTACAAGAGCCCGATTGTTTGCTTCATTTACTGACTGTGGAGCTGAGGAGCTGAGCTGCGCACGCGAGCCGCAGCGCTTCTTCAAGGTGACTCGTCAGTCAGTAGAATGTGGGCCCTGTTTGCTCTGCTGTGCCTCAGCCTGGCAGGGGCACTGCAGCCGGGCAATCAGGTGGCCCAGCATGCCATTAAGCTTCACCGTGGGAAGGGGGCAGCTGCCGCCCATGGGCACCGTTGGGTGGCAGAAAACTGCCGGCGCCTCTCGGGCCTCTTGCGGCAGAAGAGTGCTGCTGTTAGAAAGCTGGAGGCGGCAGCGGCAGCGGTGCAGCGAGACCGAGCTCTGTCAGACGCTGAGAAGCTCTTTCAGGTGCACACGCTGGAGGTGTTCCAGAAGGAGCTGAACGAGAGCGAACGCTCTGTGTTCCAGGCTGTGCTGGGCCTCCAGCGGGTGATGAAGGGTGACTTCAGGGACGTGGTGAACATGAAGGAAAGCAGCCGCCAGAGGCTGGAGGCACTCCGAGAGGCTGCCATAAAGGAAGAAGAGGAGTATGTGGAACTGGTTGCAGCTGAAAAGCACCAGCAGGAAGCTCTGAAGGTGGCACAGGACCGCAACAAGACTCTGTCCATGCTGGATGAGATCTTGGAGGACGTCAGGAAGGCTGCCGACCGCCTGGAGGAGGAGATTGAGGACCATGTCTTTGACAACAACAAGCAGATGAAGGGGGTTAATGTCGAGGCGGTTCTGAGAgtggaggaggatgaggaggacaATAAAAGGAAGAACATGTCTCGGCAAGTGGCGGAGGGTGATCTAGGACTGAGTATGCTGATTGACTCCCAGAACAATCAATATGTGCTTACTAAACCCCGCGACTCCACCATTCCCCGCGCTGACCATCACTTCATCAAGGACCTGGTGTCTGTGGTGATGCTGTCTCTGCCCTGTGGATGGCTCTGCACTTTAATGGGATTGCCTCCAATGTTTGGCTACATAGTTTGTGGAGTTCTTTTAGGTCCCTCTGGGCTTAATAGTATTAAGTCCATGGTTCAGGTAGAGACCCTCGGGGAGTTGGGTGTGTTCTTCACTCTTTTTGTGGTTGGTCTTGAGTTCTCACCTGAGAGACTCCACAAGGTCTGGAAGATCTCTGTCCAGGGCTCCTGCTACCTCAGCCTGTTGatggtgggggcggggcttctgTGGGGACAGATGTTTAGGCTCCATCCTACTCAGACTGTGTTCATTTCCAGCTGCTTGTCGCTTTCCAGCACTCCTCTGGTGTCACGATTCCTTTCAGTTGGGAACAGAGGGGACAAGGACGGGGAACTGGACTACAGTAGCGTCCTGCTGGGAATGCTGGTGATGCAAGATGTTCAGCTGGGCCTGTTCATCGCCATCATGCCCACCCTTATCCAAGTAGGGAATGGAGACATGGACAGTGCGCTGATGGGAGGCTTACGCGTTCTGGTTCTTCTGGCCCAGGTCTTGGTCTCGTTTGCTGTcgtgctgctgctctgctggctccTCAGGTCTCACCTGATTGGTCCATTCTACAGGAAGCTGCATGCTGAGAGTAAAGGGAACAAAGAGATACTTGTTCTGGGAACCACAGCGTTTGTGTTCTTAATGCTGACAATGACAGAATTCCTGCATGTTTCAATGGAGCTCGGCTGTTTCCTTGCTGGAGCCCTCCTCTCCTCACAGGGTCACATGGTCACCAGTGAAGTCATGAGCTGTGTGGAGCCAATTAGAGACTTCCTGGCCATTATCTTCTTTGCGTCTATTGGCTTACACGTGTTCCCAACATTTGTCCTCTACGAGCTGACCATCCTACTGGTCCTTACCTTATCACTGGTGATAATGAAGTTTATCATGGCAGTGCTGGTGCTCTCTGCCATCCTGCCGCTCGGCTCCCGGCACATCCGCTGGCTGGTATCGGCTGGGCTGGCACAAGTCAGCGAGTTCTCCTTTGTCCTGGGCAGTCGGGCCCGCCGGGCTGGTATCATCTCCAGGGAGGTCTATCTGCTGGTTCTCAGTGTCACCACATTAAGTCTGTTGTTAGCACCTGTGCTGTGGAGAGCTGCCACTCTTAGATGCCTCCCTCGACCCGAGAGAAAACCGTCCACCTGACCCTCGCTCAGCACGTTTGCGGTGGCTCTCTCTCCAGTGGTGGAACTTTGTGGTACGAGAAGGGTTAAAGGCAAGGAAGCCTTCAGGTTCTGATGCACAGAAACTGTTCTAGGGAAGGTGGACAGTAGGTGGCCTTGCTGCTCTGGGATAAAGCAGTTGTTCTGACATGTCAGAACCTACTGAGGAGGTTCAAACAAGGGCAAAATgaagaatttatatatatatatatatatatatatatatatatatatatatatatatatatatatatataagacttCAGTATAAATTGTTGCTAATAGTGTACAAAgatgtttatttattcttatagATCTGCAAGCTGTAGTTGTGCTTACACGCAGGGCCGGACTGGCTATCGGGAGAAACTAAAGATTTCCTGGAGGCCTGGTCTGGTCTGTCAGCTGGACTGGGCGGCCTGAGTAGCGTCTGTTTCACGGTAGATcacagtattttaatttttattttttatttttttgccatgaCTGgtcttttatataggtttgtgagttactgtactgttaagaGTACATACACTATAAAACACCAAGGCTTTAAActaggctttgattagtattgggtttactttgtcccacaaaattagacaatatatgaagaaatccgactttattatcagaaaaatagctaaagaatgtaaacaatagatcTTAACAATAGATACACTAACAAATTTAACACGGCTcccctttacaaaattaaatattttaataaatagttccataaacactattaataaacctaaaatattcaatgtttaagtattcaaagagatatttcttaAAAGTAATATTGCACAAGTTAGACACAAGTTTAACATAAGTTTACTATACGTTGttcctgaagccattagagaCGCTacaattcctttctttctccagtcaaaaaatacattcaaatcatccttcaagctac
>XM_022674849.1
aagtttaatattttattattaactgcCATTTTcacttgtttaacacttaaacAAATAATGACAGCGAGCTCCGGTTATTTAATGCACCCTTAATCAACAATTAATCaagaaaaacaagtgaaaacccccaaaaatgtgggtcagcgcatgcgcagtgtcgttaggaagcacatatcgatgggtagcacaactcggcAGAACACCCGGCAGTACAAGAGCCCGATTGTTTGCTTCATTTACTGACTGTGGAGCTGAGGAGCTGAGCTGCGCACGCGAGCCGCAGCGCTTCTTCAAGGTAACGTTTATCTGGTGACTCGTCAGTCAGTAGAATGTGGGCCCTGTTTGCTCTGCTGTGCCTCAGCCTGGCAGGGGCACTGCAGCCGGGCAATCAGGTGGCCCAGCATGCCATTAAGCTTCACCGTGGGAAGGGGGCAGCTGCCGCCCATGGGCACCGTTGGGTGGCAGAAAACTGCCGGCGCCTCTCGGGCCTCTTGCGGCAGAAGAGTGCTGCTGTTAGAAAGCTGGAGGCGGCAGCGGCAGCGGTGCAGCGAGACCGAGCTCTGTCAGACGCTGAGAAGCTCTTTCAGGTGCACACGCTGGAGGTGTTCCAGAAGGAGCTGAACGAGAGCGAACGCTCTGTGTTCCAGGCTGTGCTGGGCCTCCAGCGGGTGATGAAGGGTGACTTCAGGGACGTGGTGAACATGAAGGAAAGCAGCCGCCAGAGGCTGGAGGCACTCCGAGAGGCTGCCATAAAGGAAGAAGAGGAGTATGTGGAACTGGTTGCAGCTGAAAAGCACCAGCAGGAAGCTCTGAAGGTGGCACAGGACCGCAACAAGACTCTGTCCATGCTGGATGAGATCTTGGAGGACGTCAGGAAGGCTGCCGACCGCCTGGAGGAGGAGATTGAGGACCATGTCTTTGACAACAACAAGCAGATGAAGGGGGTTAATGTCGAGGCGGTTCTGAGAgtggaggaggatgaggaggacaATAAAAGGAAGAACATGTCTCGGCAAGTGGCGGAGGGTGATCTAGGACTGAGTATGCTGATTGACTCCCAGAACAATCAATATGTGCTTACTAAACCCCGCGACTCCACCATTCCCCGCGCTGACCATCACTTCATCAAGGACCTGGTGTCTGTGGTGATGCTGTCTCTGCCCTGTGGATGGCTCTGCACTTTAATGGGATTGCCTCCAATGTTTGGCTACATAGTTTGTGGAGTTCTTTTAGGTCCCTCTGGGCTTAATAGTATTAAGTCCATGGTTCAGGTAGAGACCCTCGGGGAGTTGGGTGTGTTCTTCACTCTTTTTGTGGTTGGTCTTGAGTTCTCACCTGAGAGACTCCACAAGGTCTGGAAGATCTCTGTCCAGGGCTCCTGCTACCTCAGCCTGTTGatggtgggggcggggcttctgTGGGGACAGATGTTTAGGCTCCATCCTACTCAGACTGTGTTCATTTCCAGCTGCTTGTCGCTTTCCAGCACTCCTCTGGTGTCACGATTCCTTTCAGTTGGGAACAGAGGGGACAAGGACGGGGAACTGGACTACAGTAGCGTCCTGCTGGGAATGCTGGTGATGCAAGATGTTCAGCTGGGCCTGTTCATCGCCATCATGCCCACCCTTATCCAAGTAGGGAATGGAGACATGGACAGTGCGCTGATGGGAGGCTTACGCGTTCTGGTTCTTCTGGCCCAGGTCTTGGTCTCGTTTGCTGTcgtgctgctgctctgctggctccTCAGGTCTCACCTGATTGGTCCATTCTACAGGAAGCTGCATGCTGAGAGTAAAGGGAACAAAGAGATACTTGTTCTGGGAACCACAGCGTTTGTGTTCTTAATGCTGACAATGACAGAATTCCTGCATGTTTCAATGGAGCTCGGCTGTTTCCTTGCTGGAGCCCTCCTCTCCTCACAGGGTCACATGGTCACCAGTGAAGTCATGAGCTGTGTGGAGCCAATTAGAGACTTCCTGGCCATTATCTTCTTTGCGTCTATTGGCTTACACGTGTTCCCAACATTTGTCCTCTACGAGCTGACCATCCTACTGGTCCTTACCTTATCACTGGTGATAATGAAGTTTATCATGGCAGTGCTGGTGCTCTCTGCCATCCTGCCGCTCGGCTCCCGGCACATCCGCTGGCTGGTATCGGCTGGGCTGGCACAAGTCAGCGAGTTCTCCTTTGTCCTGGGCAGTCGGGCCCGCCGGGCTGGTATCATCTCCAGGGAGGTCTATCTGCTGGTTCTCAGTGTCACCACATTAAGTCTGTTGTTAGCACCTGTGCTGTGGAGAGCTGCCACTCTTAGATGCCTCCCTCGACCCGAGAGAAAACCGTCCACCTGACCCTCGCTCAGCACGTTTGCGGTGGCTCTCTCTCCAGTGGTGGAACTTTGTGGTACGAGAAGGGTTAAAGGCAAGGAAGCCTTCAGGTTCTGATGCACAGAAACTGTTCTAGGGAAGGTGGACAGTAGGTGGCCTTGCTGCTCTGGGATAAAGCAGTTGTTCTGACATGTCAGAACCTACTGAGGAGGTTCAAACAAGGGCAAAATgaagaatttatatatatatatatatatatatatatatatatatatatatatatatatatatatatataagacttCAGTATAAATTGTTGCTAATAGTGTACAAAgatgtttatttattcttatagATCTGCAAGCTGTAGTTGTGCTTACACGCAGGGCCGGACTGGCTATCGGGAGAAACTAAAGATTTCCTGGAGGCCTGGTCTGGTCTGTCAGCTGGACTGGGCGGCCTGAGTAGCGTCTGTTTCACGGTAGATcacagtattttaatttttattttttatttttttgccatgaCTGgtcttttatataggtttgtgagttactgtactgttaagaGTACATACACTATAAAACACCAAGGCTTTAAActaggctttgattagtattgggtttactttgtcccacaaaattagacaatatatgaagaaatccgactttattatcagaaaaatagctaaagaatgtaaacaatagatcTTAACAATAGATACACTAACAAATTTAACACGGCTcccctttacaaaattaaatattttaataaatagttccataaacactattaataaacctaaaatattcaatgtttaagtattcaaagagatatttcttaAAAGTAATATTGCACAAGTTAGACACAAGTTTAACATAAGTTTACTATACGTTGttcctgaagccattagagaCGCTacaattcctttctttctccagtcaaaaaatacattcaaatcatccttcaagctac

Function

symbol description
tmco3 Predicted to enable solute:proton antiporter activity. Predicted to act upstream of or within cation transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMCO3 (transmembrane and coiled-coil domains 3).

NR:

description
PREDICTED: transmembrane and coiled-coil domain-containing protein 3

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015299 solute molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674848.1 False 3285 mRNA 0.48 13 20463644 20488290
XM_022674849.1 True 3299 mRNA 0.48 13 20463644 20488290

Neighbor

gene id symbol gene type direction distance location
lamp1 NA coding upstream 75282 20371424 ~ 20388362 (+)
cul4a cul4a,LOC102780633 coding upstream 99953 20335832 ~ 20363691 (+)
LOC103046697 NA coding upstream 140222 20314914 ~ 20323422 (+)
LOC103027637 LOC108429819 coding upstream 150887 20290648 ~ 20312757 (+)
LOC103046381 LOC108429788 coding upstream 176209 20281648 ~ 20287435 (+)
tfdp1 tfdp1 coding downstream 6177 20494467 ~ 20513140 (+)
grk1 grk1,grk1a,LOC107748333 coding downstream 31070 20519360 ~ 20530018 (+)
cenpe LOC107577987 coding downstream 44112 20532402 ~ 20564585 (+)
tmem255b tmem255b coding downstream 77839 20566129 ~ 20593330 (+)
LOC103029654 LOC108437114,LOC108258365 coding downstream 277452 20765742 ~ 20774329 (+)
G105041 NA non-coding upstream 39069 20348319 ~ 20424575 (+)
G105044 NA non-coding upstream 66372 20394308 ~ 20397272 (+)
G105032 NA non-coding upstream 182158 20280714 ~ 20281486 (+)
G105018 NA non-coding upstream 220289 20242905 ~ 20243355 (+)
G105017 NA non-coding upstream 225396 20237850 ~ 20238248 (+)
G105074 gas6,LOC107571980,LOC107573434 non-coding downstream 130500 20618790 ~ 20620441 (+)
G105079 NA non-coding downstream 160806 20649096 ~ 20652261 (+)
G105235 NA non-coding downstream 267003 20755293 ~ 20755532 (+)
G105271 NA non-coding downstream 340078 20828368 ~ 20860880 (+)
G105270 NA non-coding downstream 383501 20871791 ~ 20909285 (+)
nfkbiz nfkbiz other upstream 718720 19734226 ~ 19744924 (+)
G104656 pcdh8 other upstream 1540441 18919060 ~ 18923203 (+)
LOC111193547 NA other upstream 3044506 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 3324671 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 3569052 16888386 ~ 16894592 (+)
G105276 NA other downstream 500983 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 530748 21019038 ~ 21028990 (+)
G105357 NA other downstream 838902 21327192 ~ 21369204 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other downstream 1766795 22255085 ~ 22283453 (+)
LOC103045705 LOC107725350,LOC107692700,LOC108439093,LOC107565240,LOC108441473 other downstream 2036967 22525257 ~ 22588961 (+)

Expression


Co-expression Network