Gene
RNA
| Item | Value |
|---|---|
| gene id | G53651 |
| gene name | NA |
| gene type | unknown |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000009 |
| NCBI id | null |
| chromosome length | 16003125 |
| location | 6245564 ~ 6248392 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| unnamed protein product, partial |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU61103 | True | 2541 | TUCP | 0.41 | 2 | 6245564 | 6248392 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000009_06212264_06213131 | NA | coding | upstream | 31749 | 6212264 ~ 6213815 (+) |
| CI01000009_06205817_06207701 | TEX30 | coding | upstream | 37853 | 6205817 ~ 6207711 (+) |
| CI01000009_06195742_06204011 | KDELC1 | coding | upstream | 41215 | 6195742 ~ 6204349 (+) |
| CI01000009_06130188_06193279 | STXBP5L | coding | upstream | 52160 | 6130064 ~ 6193404 (+) |
| CI01000009_06002120_06017019 | GTF2E1 | coding | upstream | 227782 | 6002120 ~ 6017782 (+) |
| CI01000009_06943591_06952628 | NA | coding | downstream | 693232 | 6941624 ~ 6953067 (+) |
| CI01000009_06975071_07009147 | ARHGAP15 | coding | downstream | 726679 | 6975071 ~ 7009417 (+) |
| CI01000009_07051811_07054331 | NA | coding | downstream | 802326 | 7050718 ~ 7054625 (+) |
| CI01000009_07091022_07092696 | NA | coding | downstream | 842526 | 7090918 ~ 7092801 (+) |
| CI01000009_07101768_07105835 | NA | coding | downstream | 852877 | 7101269 ~ 7106009 (+) |
| G53669 | NA | non-coding | upstream | 1196 | 6215668 ~ 6244368 (+) |
| G53661 | NA | non-coding | upstream | 30104 | 6215073 ~ 6215460 (+) |
| G53666 | NA | non-coding | upstream | 149959 | 6065067 ~ 6095605 (+) |
| G53733 | NA | non-coding | upstream | 199841 | 6045521 ~ 6045723 (+) |
| G53723 | NA | non-coding | upstream | 209135 | 6036196 ~ 6036429 (+) |
| G53886 | NA | non-coding | downstream | 271507 | 6519899 ~ 6530269 (+) |
| G53890 | NA | non-coding | downstream | 288757 | 6537149 ~ 6537383 (+) |
| G53901 | NA | non-coding | downstream | 322019 | 6570411 ~ 6570613 (+) |
| G53903 | NA | non-coding | downstream | 328324 | 6576716 ~ 6577142 (+) |
| G54433 | NA | non-coding | downstream | 384152 | 6632544 ~ 6632778 (+) |
| CI01000009_05931829_05943829 | KCNH3 | other | upstream | 312763 | 5931718 ~ 5943899 (+) |
| G53388 | NA | other | upstream | 706510 | 5522242 ~ 5540638 (+) |
| CI01000009_03202999_03207060 | MPC2, MPC2.S | other | upstream | 3036580 | 3202207 ~ 3208984 (+) |
| G51529 | NA | other | upstream | 3182977 | 3062033 ~ 3062587 (+) |
| G51274 | NA | other | upstream | 3895078 | 2255099 ~ 2350486 (+) |
| G56100 | NA | other | downstream | 2880908 | 9129300 ~ 9130286 (+) |
| CI01000009_09853929_09854476 | SAP18 | other | downstream | 3604967 | 9853929 ~ 9856587 (+) |
| CI01000009_11761868_11765848 | ORMDL1.S, ORMDL1 | other | downstream | 5512394 | 11761606 ~ 11766944 (+) |
| G57811 | NA | other | downstream | 5685550 | 11933942 ~ 11935251 (+) |
| CI01000009_12432736_12435509 | NA | other | downstream | 6184166 | 12432538 ~ 12436017 (+) |
