LOC111193564


Basic Information

Item Value
gene id LOC111193564
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 25419540 ~ 25422258 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674930.1
aaagtAATTCTGTTTAATCTCTCTTTCAGAGATGAAGATTCTCTGGGTGATTCTAGTGGCTTTCTCTGGACTAATGGAGACCATGTCAGAGCGTTTTAATGTAGTGGGTCCAGATGCTCCTCTTGTTGCTGAAGCTGGAGAAGATCTGGTTCTGCCCTGTTCCCTTCAGCCCAACATCAGTGCTGAGGGAATGATGGTGGAGTGGCTTAGAACAGATCTGACTGATGGACTGGTCCATCTGTACAAAGATTATAAAGACACAAATGATGATCAGATTAAGACATACAGAGGGagaacagctctgtttaaagaaGAACTGAAGAAAGGAAACACCTCCCTTAAACTGTCAGCACTCCAACCTTCTGATGAGGGATCTTACAAGTGTTTAATTAAATCTGAATCCTGGTATGAGGACTTTATTCTTCGTGTTGAAATTAATGGTAAGTGCAGTAACAGATTTAATACTGTTGAAAAAGAAAGGTAtccaatttaattttattaagtcTCAAAAGACTCGTTCACTGCATAAGATTTGTCTGTATTAATacataatactaatataattcagggtgaaaaaaaatgaaaggtttCGTAAAAAATAGGCCTGATCTTCAAAAGATGAGGAATTGATGTTATTTACTTATCTGATTTACATATCTGACTTTTTTGAAGTGAAGGCAGCAGCTATTTTTTTGATAGTTCAATTCAATTACACCTGCCcaaaaaatagtataaaatgtGTGATTTTATTGAGTATcctagttttttatttttattttttcaaatgttgACCCTTTGATTTGGCATTGTTGGCTTTGATTATAGATATGCCTTCACTTTATCTGCCTCCTTGTTATTTGACCCTTGCTGCCTTCACTTCTGCAACAGACAGCCACTGCTCTatcataacatta

Function

GO: NA

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674930.1 True 914 mRNA 0.36 2 25419540 25422258

Neighbor

gene id symbol gene type direction distance location
LOC103023109 NA coding upstream 33240 25382872 ~ 25386300 (+)
LOC103022503 NA coding upstream 44708 25372806 ~ 25374832 (+)
slitrk6 slitrk6,LOC107674010,LOC107730399,LOC107558904,LOC107737039,LOC107574216,LOC107698122 coding upstream 316967 25076936 ~ 25102573 (+)
gpc6 LOC108414264,LOC105911916,LOC107730398,LOC101477426,LOC100710496,LOC107744956 coding upstream 1304079 23970691 ~ 24115461 (+)
LOC103035907 NA coding upstream 1780652 23632379 ~ 23638888 (+)
LOC103025458 NA coding downstream 1454 25423712 ~ 25449279 (+)
LOC111193460 NA coding downstream 62585 25484843 ~ 25519366 (+)
ube2f ube2f,LOC107725407,LOC107674019,LOC107556276,LOC107707607,LOC107566887 coding downstream 317969 25740227 ~ 25759643 (+)
LOC103038099 erbb4,LOC108441681,LOC108440448,LOC101079286 coding downstream 341589 25763847 ~ 26023673 (+)
LOC111193484 NA coding downstream 653440 26075698 ~ 26078799 (+)
G106255 NA non-coding upstream 16628 25360085 ~ 25402912 (+)
LOC103043670 NA non-coding upstream 17735 25400917 ~ 25401805 (+)
G106250 NA non-coding upstream 206071 25213203 ~ 25213469 (+)
G106248 NA non-coding upstream 207464 25211579 ~ 25212076 (+)
G106220 NA non-coding upstream 510511 24908744 ~ 24909029 (+)
G106274 NA non-coding downstream 29879 25452137 ~ 25542268 (+)
G106273 NA non-coding downstream 33862 25456120 ~ 25548983 (+)
G106277 NA non-coding downstream 82548 25504806 ~ 25530624 (+)
G106281 NA non-coding downstream 101319 25523577 ~ 25526560 (+)
G106282 NA non-coding downstream 104611 25526869 ~ 25527333 (+)
LOC111193563 NA other upstream 50101 25361744 ~ 25369439 (+)
G106146 NA other upstream 1006442 24411208 ~ 24413098 (+)
G106036 NA other upstream 1429948 23987207 ~ 23989592 (+)
G106017 si:ch73-12o23.1,LOC108439175,LOC108258846,LOC107722961,LOC107590719 other upstream 1495769 23915635 ~ 23923771 (+)
LOC103038624 zgc:77849,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708,LOC107564565 other upstream 2599444 22810079 ~ 22820096 (+)
LOC111193565 NA other downstream 36557 25458815 ~ 25570821 (+)
LOC103037236 NA other downstream 732159 26154417 ~ 26171801 (+)
G106661 lancl1 other downstream 2592258 28014516 ~ 28022047 (+)
G106673 NA other downstream 2644094 28066352 ~ 28066983 (+)
LOC103027743 NA other downstream 3280809 28703067 ~ 28724026 (+)

Expression


Co-expression Network