LOC103038099 (erbb4,LOC108441681,LOC108440448,LOC101079286)


Basic Information

Item Value
gene id LOC103038099
gene name erbb4,LOC108441681,LOC108440448,LOC101079286
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 25763847 ~ 26023673 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674933.1
TCTTCGAGCATCATCAGTACCAGAACTGATACGTACACGTACTTTCTATTCAAACCTTGGTggtattattgttatattaatatttttatgaaaattaaTATTATCACACACTATAGAAAcatacacacaatcacacaccgtacacactctctctttgaTCTATCTACATGAACTTTACCTGTTCTGGAGGAGTTAACTAGAGGACGGAGGATCTGGTGATACTAACCCAGTTTAGAAGATCTGGTGAGTTCAGCCTGTAGAAGATCAGCGGTGGAGATGAGGAGTGGGTGAGATGGAGAACCGTCAGAACCGTCCACGACTCAGCCCAATGGAGCCGGGCTCGCTTCGGTactgcctcctcctcctgctgctgctgctgcttctcaccgcGCTGGAGATCAGGACCGGAGAAGCCCAGGCAGTTTGTCCCGGCACTGACAACAAGCTCAGCACCCTGTCGGATCTGGACCAGCAGTACCACACTCTGCGCAAGTTCTACGAGAACTGTGAGGTGGTGATGGGTAATCTGGAGATCACCAGCATCGAACGGAACCGCAACCTCAACTTCCTCAAGTCGATTCGGGAGGTGACCGGCTACGTTCTGGTGGCTCTGAATCAGTTTGATTATCTTCCTCTGGAGAATCTGAGAATCATCCGCGGCACCAAACTCTACGAAGGTCGATACGCTCTGGCCATCTTCCTCAACTACAGACGAGACGGATACTTCGGCCTCCGGCAGCTCGGCCTCAAGAACCTCACCGAAATTCTGAATGGTGGGGTTTACGTGGATCAGAATAAGTTCCTGTGTCATGCGGACACCATCCACTGGCAGGACATCGTATATAACCCTCGAGCTGAACTGCTGGTGGTCCCGTCCAACAACAGCGGAAACTCATGTCGGAGATGTCACCGGTCCTGTAACGGACGCTGTTGGGGTCACCAAGAGGATCAGTGCCAAAGCTtaacGAAGATGGTGTGTGCTGAGCAGTGTGACGGGCGCTGTTTCGGACCGTACGTCAGTGACTGCTGCCACAGGGAGTGTGCCGGGGGATGCTCCGGACCCAAAGACACCGACTGCTTTgCTTGCACCAACTTCAACGACAGCGGCGCTTGTGTTACTCAGTGTCCTCAACCTTTCGTCTACAACCCGACCAGCTTCCAGCTGGAGCACAACCCTAAAGCCAAGTACACCTACGGAGCTTTCTGCGTCAAGAAGTGCCCACATAACTTTGTGGTGGACCAGAGCTCCTGTGTTCGAGCCTGCCCCAGCAACAAGATGGAGGTAGAAGAGAACCAGGTCAAAATGTGCATCCCCTGCACTGATATCTGCCCTAAAGTGTGTGATGGAATAGGAACAGGAAGTTTACAGATGGCTCAGACCGTGGACTCCAGCAACATCCACAAGTTCGTCAACTGCACCAAGATCAACGGCAACCTGATCTTCCTCATCACCGGGATCAAAGGAGACATGTACCACGGAATCGCAGCTCTGGACCCGGAGCGCCTGAACGTCTTCAGAACCGTCAGAGAGATCACAGGCTTCTTGAACATCCAGTCGTGGCCGGAGAACATGACCAACTTCGGGGTCTTTTCCAACCTTGCGACCATCGGGGGGAGATCACTGTACagTGGAATTTCGCTGTTGATCTTGAAGCTCCGCTGGATCATCTCCCTCCAGTTCCAGTCCCTGCAGGAGATCAGCGCCGGCAACGTCTACATCACCAACAACAGCCAGCTGTGCTACTACAACACCGTCAACTGGACCGGGCTGTTCCGCACTCGCGGCCAGAGAGCCGTCATCAAGAGCAACAAGGACCTGCGAGAGTGCTCTCAGCTGCAGATGGTGTGTGATAAGCTGTGTTCTGAAGAAGGATGCTGGGGTTCTGGTCCAGATCAGTGCCTGTCCTGCAAGTTCTACAGCCGGGGGAAAACCTGTGTGAAGTCCTGTAACCTCTACAGTGGAGATGTTCGGGAGTTTGCTAACGgttcagtgtgtgtggagtgtgacgGCCAGTGTGAGAAGACTGGAGACAGAACCGTGACCTGCCACGGCCCGgGTCCAGATCAGTGTACGAAGTGTCTCCATCTGAAGGACGGTCCAAACTGTGTGGAGAAATGTCCTGACGGGCTTCAGGGAGCCACCAGCTTCATCTTCAAATACGCCGAATCCAACAACGAGTGCCACCCCTGCCACCCCAACTGCACCCAGGGATGCACTGGACCCCGCATTCAAGACTGCATTGGACTACTGGACAGGACCCCTCTGATAGTCGCCGGGACGATCGGTGGGCTGTTTGTGGTGGTCATCATAGCGCTGGGGTTTGCCATTTTTGCCCGCCGCAAAAGCATCAAGAAGAAAAGGTGTCTGCGGCGCTTCCTGGAGACCGAGTTGGTGGAGCCTCTAACTCCCAGTGGAACGGCACCCAATCAGGCTCAGCTGAGGATCCTGAAGGAGACGGAGCTGAAGAGGGTGAAGATTCTGGGAACTGGAGCTTTTGGAACTGTGTATAAGGGTATCTGGGTTCCAGAGGGGGAGAGCGTGAAGATCCCAGTGGCCGTAAAGATCCTGAGTGAAACTACAGGACCCAAAGCCAGCGTGGAGTTTATGGACGAGGCGCTGATCATGGCCAGCATGGAGCACCCTCACCTGGTGCGTCTGCTGGGGGTGTGCCTGAGCCCCACCATCCAGCTGGTGACCCAGTTGATGCCCCACGGCTGCCTGCTGGACTACGTCCACGAACACAAGGACAACATCGGCTCCCAGCTGCTGCTCAACTGGTGTGTTCAGATCGCAAAGGGGATGATGTACTTGGAGGAGAGACGGCTCGTCCACAGGGACTTGGCAGCCCGTAATGTTTTGGTCAAATCCCCCAACCACATCAAGATCACTGACTTCGGCTTGGCTCGCCTGCTGGACACTAATGAGAAAGAGTACAACGCTGATGGAGGGAAGATGGCCATTAAGTGGATGGCACTGGAGTGCATTCACTACAGAAAGTTCACCCACCAGAGTGACGTCTGGAGCTATGGAGTAACCATCTGGGAGTTGATGACATTTGGAGGGAAGCCATATGATGGAATTCCTCCCTGCGAGATTCCGGAAATCCTGGAGAAAGGAGAACGTCTGCCTCAGCCGCCCATTTGCACCATAGACGTCTACATGGTCATGGTTAAATGTTGGATGATCGATGCTGACAGCAGACCCAGGTTTAAAGAGCTGGTGGCAGAGTTCTGCAGGATGGCCAGAGACCCTCAGCGGTACCTCGTCATCCAGGGGGACGACTGCATGAAGCTGCCCAGTCCAAACCACAGCAAATTCTTCCAGAGTCTTCAGGACGAGGACGACCTGAGGGACCTGATGGACATTGAGGAGTATCTGGTACCTCACCCATCCCGAGCTCAACCCGACTCTAAACAGGGTCAGTGCTGTCATCATGAAGGGGTTTTCAGCCCTCAGGAAGTTTCTGGGCTCCATTCCCGCCTggcctcctcctccagctccaccTCAGCAGGGACCCAGCGGGGGTCTCTGGCCCCTCAGGAGGAGAAGCTCTGTAATGGGAGTCTGAAGATGCAGAGCGGCGCTGGCTTTGCGGAGGACGTTAGCGCTCAGCGCTACAGCGCCAACCCCACCGTGTTCCTGCCACAGATAACACAGAGGGGGGGCACTGATAAGGACGGATACATGGCCCCCCGCAAAGATAAAAGTTCCTCAGACCGACTGAATCCAGTTGAGGAGAATCCCTTCGTCACGCGACGAACAAACGGCGAAATTCACGCGCTGGACAACCCAGGTTACCACAGTACCCCTGATGGACACCCTAAGATTGACGAGCCGTATTTTAACGAACCCCTTTACCTCAACACATTCCACAACAAAGCCAACGTCAACCAAGCAGCACTGAAGAAGAATTCAGTGGGAGGAGTTTCCAGCCCACTGGAGATGGGAACTACCACAACCAGCACATCCACCAGCAGCCACGTGCCGCTCACCACCACCCAATCCATGAGAGTCCATCACCACAGCCAGGGAGCACATGTACACTTCGCAATTCCACCAGTCCAACCTCCTCAAAGTGGACTGTTGAGTCAAAACGGCCACAGCCACGCCCACTTAGCCCAAACCATCCACACTAAACATCCCGGCAAATCCCAGCAAGGCCATCATTCTCCTCACCATTCCAGTCAGATCTGCCACCTCAACCAGCAGCTCCAACCCAGCCTCGCGGATCAGCAGGTCCACCTGGCGAAGTCCCTCGTCTCTGGTAAAAGCAGTCTCCCAGGTCACCCCGCCCACTCAGGCAGCGTATCCCAACCAGGTCCAACTGGAACCGTCATGCTCAGCAAGAAGTACTGGAAGACCTTCGACAACCCCGAGTACTGGCAGCACAGCCTCCCCCTCAAAGCCTCCTCCCAGGAGAACCCTCTCAAAGACTCGTCTCAGAGCTGCAACGCTACCAGCCTCTACAAACAAACCCTCTACAAGCAGAACGGCCGCGTACGCTCCACCGTGGTCGACAACCCGGAGTACCTGTCCGAGCTGGAGGCCATGAAGCCCGGCCAAGTTCTTCCACCACCTCCATACCGGCAGAGGAACACTGTAGTCTAACATCCCGGTCTACGTATTCAACAGAGCCTGATTCTTCAACCAGCACCTTAACCCTCCATCCTTTCCTATCACACATTCACGTACGCACCGAAATGGACAAACCCAACCTGGCCAATCGGCCAGTTTTCCACTGCAGGAACAGATGGTCAATACAGCCATGCCGTACCTTTCTTCACAACTGGTTACAATTTCTTCTTCCATttgctaaataataaaataatccttaaataaacacaaataaaccaataaataaaaacaaaaagcccAAGCAACACAGCCTCCCAACCTCCCACAAAGCAAGGAAGCAAGGAAGAGTGAGTTAGAGGAAGGTAGAGTGAAACAGAGCAAGGTAGAACAAAGTATAGCAAGGTAGATTGAGGCTgagatgaggtagagtgagacagagcgagGCATAGTGACGGTATATTGAgatagagtgagacagaggtaTAGAGTAAGGTGGATTAGTATAGCATGAGGGTATAGTGAGGCATAGTATTGTAGAGCAAGGTGGATgatagagtgatgtagagtaaggtagagtataatagagtgaggtagagggaagtTGGAGTGTGGTGGAGtatgatagagtgaggtagagtgaaggtagagtATGATAGTgtaggggtagagtgaggtagggtatAATAGAG

Function

symbol description
erbb4 Enables several functions, including epidermal growth factor receptor binding activity; protein homodimerization activity; and transmembrane receptor protein tyrosine kinase activity. Involved in several processes, including positive regulation of phosphorylation; positive regulation of signal transduction; and protein phosphorylation. Located in basolateral plasma membrane; mitochondrion; and nucleus. Part of receptor complex. Implicated in amyotrophic lateral sclerosis type 19; colorectal cancer; esophagus squamous cell carcinoma; hepatocellular carcinoma; and lung adenocarcinoma. Biomarker of carcinoma (multiple); ductal carcinoma in situ; reproductive organ cancer (multiple); and urinary bladder cancer.

NR:

description
PREDICTED: receptor tyrosine-protein kinase erbB-4-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674933.1 True 5265 mRNA 0.53 27 25763847 26023673

Neighbor

gene id symbol gene type direction distance location
ube2f ube2f,LOC107725407,LOC107674019,LOC107556276,LOC107707607,LOC107566887 coding upstream 4204 25740227 ~ 25759643 (+)
LOC111193460 NA coding upstream 244481 25484843 ~ 25519366 (+)
LOC103025458 NA coding upstream 314568 25423712 ~ 25449279 (+)
LOC111193564 NA coding upstream 341589 25419540 ~ 25422258 (+)
LOC103023109 NA coding upstream 377547 25382872 ~ 25386300 (+)
LOC111193484 NA coding downstream 52025 26075698 ~ 26078799 (+)
LOC103039357 NA coding downstream 165292 26188965 ~ 26193144 (+)
LOC103039973 NA coding downstream 221566 26245239 ~ 26248347 (+)
LOC111193566 NA coding downstream 226500 26250173 ~ 26254877 (+)
slitrk1 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 coding downstream 487448 26511121 ~ 26515238 (+)
G106370 NA non-coding upstream 53391 25710216 ~ 25710456 (+)
G106289 NA non-coding upstream 197421 25563594 ~ 25566426 (+)
G106275 NA non-coding upstream 203819 25558581 ~ 25560028 (+)
G106286 NA non-coding upstream 209132 25552591 ~ 25554715 (+)
G106284 NA non-coding upstream 217037 25542607 ~ 25546810 (+)
G106380 NA non-coding downstream 2571 26026244 ~ 26030682 (+)
G106446 NA non-coding downstream 199463 26223136 ~ 26228689 (+)
G106466 NA non-coding downstream 261219 26284892 ~ 26285416 (+)
G106476 NA non-coding downstream 286056 26309729 ~ 26309982 (+)
G106486 NA non-coding downstream 428535 26452208 ~ 26452448 (+)
LOC111193565 NA other upstream 193026 25458815 ~ 25570821 (+)
LOC111193563 NA other upstream 394408 25361744 ~ 25369439 (+)
G106146 NA other upstream 1350749 24411208 ~ 24413098 (+)
G106036 NA other upstream 1774255 23987207 ~ 23989592 (+)
G106017 si:ch73-12o23.1,LOC108439175,LOC108258846,LOC107722961,LOC107590719 other upstream 1840076 23915635 ~ 23923771 (+)
LOC103037236 NA other downstream 130744 26154417 ~ 26171801 (+)
G106661 lancl1 other downstream 1990843 28014516 ~ 28022047 (+)
G106673 NA other downstream 2042679 28066352 ~ 28066983 (+)
LOC103027743 NA other downstream 2679394 28703067 ~ 28724026 (+)
LOC111193573 NA other downstream 3125392 29149065 ~ 29159680 (+)

Expression


Co-expression Network