ncam2 (ncam2,LOC107721821,LOC107698913,LOC107751079)


Basic Information

Item Value
gene id ncam2
gene name ncam2,LOC107721821,LOC107698913,LOC107751079
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 29844100 ~ 30451601 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674973.1
gaGCGTCGCGCGCTCAGAGCTGGTACAGATCTCAGCTCTGCAACACGAGCACGAGccgctctgtctgtctgtatctctcgcGCTGAATCCGCTGCTGCTGAAGATGCTCCTCCAGTCCGCCCGCGTGCTGGGATTGCTGGGATTGCTGGTCTGCGGCAGTCACGctGTTCTTCAGGTGTCTATATCCCTCAACAAGGTGGAGCTGAGTGTTGGAGAGTCCAAATTCTTCACCTGCACAGTCATTGGTGAGCCGGTCAGCATCAACTGGTTCAACCCTCAAGGCGAGCGAATTATTTCCAACCAGAGGGTCGTGATGCACACGGAGGGCGTCCGGTCCAGACTCACCATCTACAACGCCATCATCGAGGACGCTGGGATATACCGGTGCCAGGCGGTGGACATCAAGGGACAGACTCAGGAGGCCACAGTGGTGCTGGAAATATACCAGAAGCTGACCTTCCGGGAGGTGAAGACGCCTCAGGAGTTTCGACAAGCAGAGGATGCCGAGGTGATGTGTGACGTGATCAGTTCTCCTGTCCCTGCCGTCTCCTGGTTCTATAAGAACCGAGAGATCACGCCGGAGAACAGCAACAGGCTCCAGGTACTTCCCAACAACAACCTCCAGATCCTGAAAGTGGCCAAAGAGGATGAGGGGGTGTACCGCTGCGAGGCGCGAGTGGAGGCCCGAGGCGAGATCGATTTCCGGGACATCGTGGTGGTGGTAAACGTTCCCCCTGTGCTGTCAGTTCCTCAGGAGGCCTTCAACGCCACGGCTGACTACCAGGAATCCGTGACATTTACCTGCATCACGTCGGGCTCTCCTGACCCTGAGGTCACATGGCTCCGGAAGGGACGACAAATCGAGAGATCTGAGCAGTACATGTTCAACATGCTTGAAGGAGGCAAGAGCACACTCACCATTAAGAACATCAGACAGGGGGACGGAGGCCCGTACACCTGCAGAGCCAGTAACAAGGCTGGAAGCAAGGAGAGCGAGATTCTACTCAAAGTGTTTGTTCAGCCGCACATCACTCATCTGAGGAACGTGACGGCGGTGGAGGGCAGCGCTGCGATGATCTCCTGCACCGCTGAGGGAGAACCTCTGCCTGAGATCTCCTGGAGGAGAGCCAGCGATGGACAGACCTTCTCTCACGGGGACAAGAGCCAGGATGGAAGAGTGGAGGTTCAAGGGCGTCACGGCAAGTCCATGCTGACCATCAGCGGAGTCCGTCTGTCTGACTGGGGTCGCTTTGATTGTGAAGCTCTCAGCAGAATCGGAGGCCATCAGAAAAGCATGTTCCTGGATATTGAGTATGCTCCAAAGTTTCAGATCAATCACACCATCTTCTACTCGTGGGAGGGGAATCCAGTAAACATTAGCTGTGACGTGATGTCCAACCCTCCAGCCACCATGCTGTGGAGACGAGACCGGTTCACCATCTCCAACGAAGGAACCAGCAACACCCGCATCCACACCGCAGAGGGAAGATCATTACTGGAGGTCACCCCGATGTCCGACCGGGATTTTGGACGCTACAACTGCACGGCCAGGAACAACATCGGCGCTCGATATCAGGAGTTTATTTTAGCACAGGCAGATGTTCCGTCCAACCCGTATTCTGTGCGATTGTCCTCGGTGTCTCAGCGCATCGCTTCAGTCACCTTTATGAAGCCTGACTCTCACGGCGGAGTTCCCATCGGACACTATATCGTCAACTACAAGGACCAGAGTTCCCAGGAGTGGAGGACGGTGAAGTCACATGGTGTACAGAcGATGGTTCTCCTGACCAGCCTGGAGCCCAACACGACCTATGAGGTCAGAGTGGCGGCCGTGAATGGAAAAGGTCAAGGGGAGTACAGCCacacggagatcttccagacgtTACCCATCCgAGAGCCCAGTCCCCCTACAGTGCACGGCCAGAGAGCTGTGGGAAAAGCCTACAGACTGGGACTGGTCAAACAGGATGATGGTGGGATGCCCATCGTGGAATACATTATAAAATACAAGACAGATAAGGAGGAGCAGTGGATGACTAAACTGGTTCCAGGTATGAATGACTTCACTGTCCTGCAGCCGCTGCAGTGGAACACGCGCTATAACGTGGAGATCACGGCCCGCAACGTTAAAGGCCTTTCAGAACCCACGTATTTCCAGTTCGTCATGCCACAGAAACCAGACATCACAGCAGACTCCCTGTTCAGCGGCCTGGGCTTGGGCGCGGTGGTGGGTCTGGGGCTGGCCGGACTGCTGCTCCTGCTGGTGCTGGTGGACGTCAGCTGCTTCTTCTTGCGTCAGTGTGGTCTGCTGATGTGCATCTCCCGAAAGCTCTGCAGCAAGAAGACCGCCACCAGCAGTAAAGGAAAAGAGCTGGAGGAGGGAAAAGCGGCCTACCTaaaactcCCTCTCAAAGAAGAAAACGGAAAAGACGTCCTAAAGCCAGACCTGATCGAGATCAAGGTGCACAGCGACAACAGCATCCACACAAAACAGGATGACAGCAAAGCGTAATGAGGGGAAGGGGGGGCGGAGAAGGACATTGTTTGGGAGGACGTTCCGAGCCTGGCCCGAACAAGACCAAaacaaccagaaaaaaaaaaaaaaacgagagaagAAAAACGCAAAGAAGCGAAAAACGGAATCCTCGGAAGCTGAACGGATGACTGAGGGCGCGCACACACACGGGCCTCTGTAAATATGTTCAAATATATAAAGAGAGTTGAgtttttattgtgataaattaatTGTCCTTTCTATTTGAATCGGCTCCAGCTGAAGGCACTTGATTTTTAAGtgacttttgttcttttttttagaccctttttctttgattttgctctCGGTTTTGGTAGGACTTTATTCATGCTTATGTTCCTTCGTTCTTTACCAATTGAAACATGTTGGGTCTCCAAGAAAACTCTGAAGAATGGAGCTTTTAAGGGTTGTGTGCCAGATTGGACGTACCACCCAACTAAACGTCTTGTCTACATTTCTACAACAGCATGTGGTCTAAGGCATGGACGTGTGCTTCAAGACAGTAGCGTTGATGTTCCTGCTGGTTTGGCCATACTCTACCTGTGCATCTGGATTTAGTGACCATCcttcaacctttattttgaggAACCAGTTGAGCAATGAAGGACAGACCAACACAGGAGACATTAAAAGACATCAGTTCGGTAACACTTCTTATGAATCCTGTAtgaattataatgcattaaatagcaaacataacatttttacagtaactGTCATAAGCTAGTTAAATACCATTTAAGTTAAAAGGattgtaaaattacaataattcaCTCTGGAAATACAATACAgcttaatactgtataataggAGTTGTAATAGAGTATTACAgcttttgtaataaataaatctattataatactgtaattacACAGCATGAAGTCACACTTTGCTGCAGTAAAGAAAATAGTAACTTATTCTTATGGCCTAAAACACTCACTGTGTCCAGGCAGTCAATTACCATTATGTAACATACTGAGTATCTAAATAGCCATGGTAGAATAGCTATGGTAGGcaaaactacacactgatggtgcaTAGTAAAGGGTGCTAGGTcacgcccattatgcaaataaaggaTGTCAGAGGGCCAATAGGAAAGATGACATTTTTGTGTAACTACAAAATATTAGAGTTTCAATTTAGGTGATACTTACTCAAAGTATTGGGTGGgtgcagagtggtccagtggtctaaatcCCAgtgtttgaatcccagtcatgcagcttgacaTCAGCTGTCGGAGTCCTGAAAGAGCAAAAATTGACCTTgttctttctgggtgggtacagtagatggcgctctttcccctcatcacttctagggtgatgttgatcagcacaaggctgcatctgtgagctgatgtatcaaaaccaaTATCTTTTGTTTGTGCATTTGTTATACTTAAATggttttcagattatcaaacaaactttctgtctgacaacatgaagcagctgaaagatcttaaaaaacaacacattattaTATCCCGATCTGAAAATattcaaaaacagataagaaaacaGGGTCATTGATCAGCTATCAGTCTagaaaagtcatttctaaagctttgagactccaaagaaccacagtgagagctattattcactaatggagaaaacatgga
>XM_022674975.1
gaGCGTCGCGCGCTCAGAGCTGGTACAGATCTCAGCTCTGCAACACGAGCACGAGccgctctgtctgtctgtatctctcgcGCTGAATCCGCTGCTGCTGAAGATGCTCCTCCAGTCCGCCCGCGTGCTGGGATTGCTGGGATTGCTGGTCTGCGGCAGTCACGctGTTCTTCAGGTGTCTATATCCCTCAACAAGGTGGAGCTGAGTGTTGGAGAGTCCAAATTCTTCACCTGCACAGTCATTGGTGAGCCGGTCAGCATCAACTGGTTCAACCCTCAAGGCGAGCGAATTATTTCCAACCAGAGGGTCGTGATGCACACGGAGGGCGTCCGGTCCAGACTCACCATCTACAACGCCATCATCGAGGACGCTGGGATATACCGGTGCCAGGCGGTGGACATCAAGGGACAGACTCAGGAGGCCACAGTGGTGCTGGAAATATACCAGAAGCTGACCTTCCGGGAGGTGAAGACGCCTCAGGAGTTTCGACAAGCAGAGGATGCCGAGGTGATGTGTGACGTGATCAGTTCTCCTGTCCCTGCCGTCTCCTGGTTCTATAAGAACCGAGAGATCACGCCGGAGAACAGCAACAGGCTCCAGGTACTTCCCAACAACAACCTCCAGATCCTGAAAGTGGCCAAAGAGGATGAGGGGGTGTACCGCTGCGAGGCGCGAGTGGAGGCCCGAGGCGAGATCGATTTCCGGGACATCGTGGTGGTGGTAAACGTTCCCCCTGTGCTGTCAGTTCCTCAGGAGGCCTTCAACGCCACGGCTGACTACCAGGAATCCGTGACATTTACCTGCATCACGTCGGGCTCTCCTGACCCTGAGGTCACATGGCTCCGGAAGGGACGACAAATCGAGAGATCTGAGCAGTACATGTTCAACATGCTTGAAGGAGGCAAGAGCACACTCACCATTAAGAACATCAGACAGGGGGACGGAGGCCCGTACACCTGCAGAGCCAGTAACAAGGCTGGAAGCAAGGAGAGCGAGATTCTACTCAAAGTGTTTGTTCAGCCGCACATCACTCATCTGAGGAACGTGACGGCGGTGGAGGGCAGCGCTGCGATGATCTCCTGCACCGCTGAGGGAGAACCTCTGCCTGAGATCTCCTGGAGGAGAGCCAGCGATGGACAGACCTTCTCTCACGGGGACAAGAGCCAGGATGGAAGAGTGGAGGTTCAAGGGCGTCACGGCAAGTCCATGCTGACCATCAGCGGAGTCCGTCTGTCTGACTGGGGTCGCTTTGATTGTGAAGCTCTCAGCAGAATCGGAGGCCATCAGAAAAGCATGTTCCTGGATATTGAGTATGCTCCAAAGTTTCAGATCAATCACACCATCTTCTACTCGTGGGAGGGGAATCCAGTAAACATTAGCTGTGACGTGATGTCCAACCCTCCAGCCACCATGCTGTGGAGACGAGACCGGTTCACCATCTCCAACGAAGGAACCAGCAACACCCGCATCCACACCGCAGAGGGAAGATCATTACTGGAGGTCACCCCGATGTCCGACCGGGATTTTGGACGCTACAACTGCACGGCCAGGAACAACATCGGCGCTCGATATCAGGAGTTTATTTTAGCACAGGCAGATGTTCCGTCCAACCCGTATTCTGTGCGATTGTCCTCGGTGTCTCAGCGCATCGCTTCAGTCACCTTTATGAAGCCTGACTCTCACGGCGGAGTTCCCATCGGACACTATATCGTCAACTACAAGGACCAGAGTTCCCAGGAGTGGAGGACGGTGAAGTCACATGGTGTACAGAcGATGGTTCTCCTGACCAGCCTGGAGCCCAACACGACCTATGAGGTCAGAGTGGCGGCCGTGAATGGAAAAGGTCAAGGGGAGTACAGCCacacggagatcttccagacgtTACCCATCCgAGAGCCCAGTCCCCCTACAGTGCACGGCCAGAGAGCTGTGGGAAAAGCCTACAGACTGGGACTGGTCAAACAGGATGATGGTGGGATGCCCATCGTGGAATACATTATAAAATACAAGACAGATAAGGAGGAGCAGTGGATGACTAAACTGGTTCCAGGTATGAATGACTTCACTGTCCTGCAGCCGCTGCAGTGGAACACGCGCTATAACGTGGAGATCACGGCCCGCAACGTTAAAGGCCTTTCAGAACCCACGTATTTCCAGTTCGTCATGCCACAGAAACCAGACATCACAGACTCCCTGTTCAGCGGCCTGGGCTTGGGCGCGGTGGTGGGTCTGGGGCTGGCCGGACTGCTGCTCCTGCTGGTGCTGGTGGACGTCAGCTGCTTCTTCTTGCGTCAGTGTGGTCTGCTGATGTGCATCTCCCGAAAGCTCTGCAGCAAGAAGACCGCCACCAGCAGTAAAGGAAAAGAGCTGGAGGAGGGAAAAGCGGCCTACCTaaaactcCCTCTCAAAGAAGAAAACGGAAAAGACGTCCTAAAGCCAGACCTGATCGAGATCAAGGTGCACAGCGACAACAGCATCCACACAAAACAGGATGACAGCAAAGCGTAATGAGGGGAAGGGGGGGCGGAGAAGGACATTGTTTGGGAGGACGTTCCGAGCCTGGCCCGAACAAGACCAAaacaaccagaaaaaaaaaaaaaaacgagagaagAAAAACGCAAAGAAGCGAAAAACGGAATCCTCGGAAGCTGAACGGATGACTGAGGGCGCGCACACACACGGGCCTCTGTAAATATGTTCAAATATATAAAGAGAGTTGAgtttttattgtgataaattaatTGTCCTTTCTATTTGAATCGGCTCCAGCTGAAGGCACTTGATTTTTAAGtgacttttgttcttttttttagaccctttttctttgattttgctctCGGTTTTGGTAGGACTTTATTCATGCTTATGTTCCTTCGTTCTTTACCAATTGAAACATGTTGGGTCTCCAAGAAAACTCTGAAGAATGGAGCTTTTAAGGGTTGTGTGCCAGATTGGACGTACCACCCAACTAAACGTCTTGTCTACATTTCTACAACAGCATGTGGTCTAAGGCATGGACGTGTGCTTCAAGACAGTAGCGTTGATGTTCCTGCTGGTTTGGCCATACTCTACCTGTGCATCTGGATTTAGTGACCATCcttcaacctttattttgaggAACCAGTTGAGCAATGAAGGACAGACCAACACAGGAGACATTAAAAGACATCAGTTCGGTAACACTTCTTATGAATCCTGTAtgaattataatgcattaaatagcaaacataacatttttacagtaactGTCATAAGCTAGTTAAATACCATTTAAGTTAAAAGGattgtaaaattacaataattcaCTCTGGAAATACAATACAgcttaatactgtataataggAGTTGTAATAGAGTATTACAgcttttgtaataaataaatctattataatactgtaattacACAGCATGAAGTCACACTTTGCTGCAGTAAAGAAAATAGTAACTTATTCTTATGGCCTAAAACACTCACTGTGTCCAGGCAGTCAATTACCATTATGTAACATACTGAGTATCTAAATAGCCATGGTAGAATAGCTATGGTAGGcaaaactacacactgatggtgcaTAGTAAAGGGTGCTAGGTcacgcccattatgcaaataaaggaTGTCAGAGGGCCAATAGGAAAGATGACATTTTTGTGTAACTACAAAATATTAGAGTTTCAATTTAGGTGATACTTACTCAAAGTATTGGGTGGgtgcagagtggtccagtggtctaaatcCCAgtgtttgaatcccagtcatgcagcttgacaTCAGCTGTCGGAGTCCTGAAAGAGCAAAAATTGACCTTgttctttctgggtgggtacagtagatggcgctctttcccctcatcacttctagggtgatgttgatcagcacaaggctgcatctgtgagctgatgtatcaaaaccaaTATCTTTTGTTTGTGCATTTGTTATACTTAAATggttttcagattatcaaacaaactttctgtctgacaacatgaagcagctgaaagatcttaaaaaacaacacattattaTATCCCGATCTGAAAATattcaaaaacagataagaaaacaGGGTCATTGATCAGCTATCAGTCTagaaaagtcatttctaaagctttgagactccaaagaaccacagtgagagctattattcactaatggagaaaacatgga

Function

symbol description
ncam2 Acts upstream of or within response to hypoxia. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Is expressed in brain; sensory system; and swim bladder. Orthologous to human NCAM2 (neural cell adhesion molecule 2).

NR:

description
PREDICTED: neural cell adhesion molecule 2 isoform X1

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K06491 NCAM, CD56; neural cell adhesion molecule

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674973.1 True 4166 mRNA 0.49 17 29844100 30451601
XM_022674975.1 False 4163 mRNA 0.48 17 29844100 30451601

Neighbor

gene id symbol gene type direction distance location
LOC111193470 NA coding upstream 185678 29656537 ~ 29658422 (+)
LOC103025432 NA coding upstream 255978 29563196 ~ 29588122 (+)
donson LOC107555241 coding upstream 286057 29538337 ~ 29558043 (+)
LOC103025657 runx1,LOC108429862,LOC107571884 coding upstream 324266 29417222 ~ 29519834 (+)
LOC103024513 LOC107555266,LOC106574727,LOC106575573,LOC108429863,LOC107568777,LOC107709315,LOC107718016,LOC105889574,LOC100333907 coding upstream 602503 29208551 ~ 29241597 (+)
LOC111193471 NA coding downstream 88660 30540261 ~ 30547361 (+)
LOC111193577 LOC108429857,LOC108258902 coding downstream 210398 30661999 ~ 30668744 (+)
gart gart coding downstream 220551 30672152 ~ 30711252 (+)
adamts5 adamts5,LOC107751075,LOC107698897 coding downstream 809679 31261280 ~ 31300421 (+)
adamts1 adamts1,LOC107698918,LOC107751074 coding downstream 861139 31312740 ~ 31319149 (+)
G107127 NA non-coding upstream 12132 29831737 ~ 29831968 (+)
G107121 NA non-coding upstream 35285 29808575 ~ 29808815 (+)
G107113 NA non-coding upstream 76106 29767531 ~ 29767994 (+)
G107111 LOC108264080 non-coding upstream 90860 29752736 ~ 29753240 (+)
G107106 NA non-coding upstream 123233 29720626 ~ 29720867 (+)
G107267 NA non-coding downstream 41400 30493001 ~ 30528484 (+)
G107342 NA non-coding downstream 263579 30715180 ~ 30716606 (+)
G107389 NA non-coding downstream 281067 30732668 ~ 30732900 (+)
G107394 NA non-coding downstream 292076 30743677 ~ 30744047 (+)
G107396 NA non-coding downstream 293830 30745431 ~ 30745631 (+)
G107117 NA other upstream 63173 29780326 ~ 29780927 (+)
LOC111193573 NA other upstream 684420 29149065 ~ 29159680 (+)
LOC103027743 NA other upstream 1120074 28703067 ~ 28724026 (+)
G106673 NA other upstream 1777117 28066352 ~ 28066983 (+)
G106661 lancl1 other upstream 1822053 28014516 ~ 28022047 (+)

Expression


Co-expression Network