LOC111193577 (LOC108429857,LOC108258902)


Basic Information

Item Value
gene id LOC111193577
gene name LOC108429857,LOC108258902
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 30661999 ~ 30668744 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674976.1
CCAGTCCATTAGGAGGCAGCACTGATCCATTTCTCCAGTCCAGCAACAGGAGGAAAATCCACCAACCACAAcactacagcagcagcaacagatcAACGGAGTCTCTACAAACTCTTATTTGATGTAAGGTCTGGACGGGTCAGTATCAGTCAGGGTTTTAGGATGGAGGTGGCTCCACCCGGTCGTGATCCCGAAGCCTCTGTAAGCAGAAGCGGTAAAGCCGATGCTGAGGAGgaaggggaggaggaggaggtggtgcaCACGGCCATGCTGTGGTCCATTCAGGAGGCAGTGGAGAGGCAGACCCTTCAGATCGGGGTCTCGGCCTGCGGAGCTACAGCTGTGGTGGACGTGCTTCAGGCTCTGGGGATTACTGTAGCTCCAGAGACGGCCGACCACTGCGTTCGGACCAGACTGAGGAGAAACGATTCCCCACTGCCTGATTACCTTCACTCACGCAGCAACGCTGGTGCCACCCACCACCAGCTGATAGAAGGGGCAGAGCAGGCGAGTGGAGGTCGAGTGCTTGGGAGGTTCTTTGGTTTTTACCCAGCGAGGCGGGTAAAGCTGGTACCCTGGCTGGCGCGCTGGATCAGGAGAGGAGCTGTGCCTGTAGCCACCATGAACATGCAGCGGGGAGTAGCAGAGGGGGAGGAAATCCCTGATGCCTGGCATCACCAGCTGATCTTCGGGGTGGCACCCAATGCTGTGTTCATGACTAATCCTCTGGATGTGGCTGGTGAAGAAGACGTTCATGTACGTCTGTGCAGTGAATCTGTGCTGCTGATCCGCCGTGAAGACGTCTTAAAGAGGCTAACGCTGGACTGCCCACTCtcactgatctcagatcagcagGCTGACCCCCGCTGGAAAACCATCAATGTTGAAGgTCAAGTTAAGCAGATGATAAATGAAGAAGACCACAGTGATCAGGACCATCCAAAAACGACGCACATAACCATCCCCGCAgcgtacagctctggaatcaCGCTCTTCACTCTCAGAGACTCTGCAGTTGGTCAGGAGCTGCTCGGTGCTCCAGAGCTGCCTGTGTTATAGTCAGCAGTTCACTATGATCTGCATCGTGTCTGGACTTGTCCTTCATGCAGCTCGTTGCTGTGCTTCTTATAGATGATGTGCAATTGAAGTTTTGTGTCAGTATTTTAATCTGTACGAAAACGATTAGCGAGATTTTTAACACTGTATTCTCTGGCAGACTGGTAAAAGGTGGAAGTTTTGGCGTGTTGCACTTGTGTAAACTTGTCCACTCTGCTGTTGTGAAGAACATCATACTTTtagatgtgtaaaactgatttatttatataaattaaaagccTGGAAATCAGTGTACTGAAGGGATATGGCAACACAGTGCACTGGTTTTCAGTTCTGCCTGTGTGAATgcatcttaaatatttttatcttattattaggggtgtaaCTTTACAGAAAATTCACGGTTTGGTTCACACCTCGGTATAAACCCCACGGTGCAGTATGTTTTCAATACGTTTTCGGTacggttggtggaaaaaaataatttcataacaatgaatcttcattataaccatgtttagTTTTTGGGGATGGAATATTGTAACAGGGctcgagctcttttattaaatgcttaaaaccag

Function

NR:

description
PREDICTED: uncharacterized protein LOC108429857

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674976.1 True 1637 mRNA 0.49 5 30661999 30668744

Neighbor

gene id symbol gene type direction distance location
LOC111193471 NA coding upstream 114638 30540261 ~ 30547361 (+)
ncam2 ncam2,LOC107721821,LOC107698913,LOC107751079 coding upstream 210398 29844100 ~ 30451601 (+)
LOC111193470 NA coding upstream 1003577 29656537 ~ 29658422 (+)
LOC103025432 NA coding upstream 1073877 29563196 ~ 29588122 (+)
donson LOC107555241 coding upstream 1103956 29538337 ~ 29558043 (+)
gart gart coding downstream 3408 30672152 ~ 30711252 (+)
adamts5 adamts5,LOC107751075,LOC107698897 coding downstream 592536 31261280 ~ 31300421 (+)
adamts1 adamts1,LOC107698918,LOC107751074 coding downstream 643996 31312740 ~ 31319149 (+)
cyyr1 cyyr1,LOC107751099 coding downstream 656950 31325694 ~ 31341351 (+)
app app,appa,LOC108258852,LOC107593741,LOC107698920 coding downstream 678557 31347301 ~ 31402273 (+)
G107267 NA non-coding upstream 133515 30493001 ~ 30528484 (+)
G107261 NA non-coding upstream 197068 30401626 ~ 30464931 (+)
G107128 NA non-coding upstream 206229 30448327 ~ 30455770 (+)
G107250 NA non-coding upstream 463055 30198295 ~ 30198944 (+)
G107243 NA non-coding upstream 493875 30167318 ~ 30168124 (+)
G107342 NA non-coding downstream 46436 30715180 ~ 30716606 (+)
G107389 NA non-coding downstream 63924 30732668 ~ 30732900 (+)
G107394 NA non-coding downstream 74933 30743677 ~ 30744047 (+)
G107396 NA non-coding downstream 76687 30745431 ~ 30745631 (+)
G107397 NA non-coding downstream 91926 30760670 ~ 30790277 (+)
G107117 NA other upstream 881072 29780326 ~ 29780927 (+)
LOC111193573 NA other upstream 1502319 29149065 ~ 29159680 (+)
LOC103027743 NA other upstream 1937973 28703067 ~ 28724026 (+)
G106673 NA other upstream 2595016 28066352 ~ 28066983 (+)
G106661 lancl1 other upstream 2639952 28014516 ~ 28022047 (+)

Expression


Co-expression Network