gart (gart)


Basic Information

Item Value
gene id gart
gene name gart
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 30672152 ~ 30711252 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674977.1
TCTTTCAGGAGTTCCACACGAGCAGACTCCCAGTTCACACCAGTACAGACCCGAGTCCTTCCACTGGAACCTGGACcgcagctggagcagcagcacCGCACACCCCGAGCCTTCCCTTCCCTCTGTACTGACTCCAGAACAGacagGTGCCATGGCGGAGCATGTGCTCGTGATTGGCAGTGGTGGGCGGGAGCATGCGTTGGCGTGGAAGCTGGCGCAGTCTCCTCACGTCCAGAAGGTCCTTGTGGCCCCGGGTAACGCGGGCACGGCCGACTGCGGAAAGATCTGCAACTCTGctgtcAGTGTGAGTAATCACTCTATCCTGGCTCAGTTCTGTAAAGATCATAATGTGGGACTGGTGGTTGTTGGCCCGGAGGTTCCTTTAGCTGCAGGTATTGTGGATGACCTGACGGCAGCAGGTGTGCCGTGCTTCGGGCCCTCAGCCAAGGCGGCCCAGCTGGAGGCCAGTAAAAGCTTCTCCAAGAGCTTCATGGACCGTCACGGCATCCCCACGGCccgctggagctccttcacagacCCTCAGGAGGCCTGCAGATACATTCGAGGGGCGGATTTCCCAGCTCTGGTGGTGAAGGCCAGCGGCCTGGCTGCAGGGAAAGGAGTGATTGTAGCGAAGGATAAGGATGAGGCCTGCCAGGCAGTACTGGACATCATGAAGGACAAGACGTTTGGCACAGCTGGTGATACTGTGGTGGTGGAAGAACTGCTTGAAGGAGAGGAAGTCTCTTGTCTGTGTTTCAGTGATGGGTCTACAGTAGCTGCTATGCCTCCTGCTCAGGACCATAAGAGGCTGCTGGATGGAGATCAGGGTCCGAATACGGGGGGAATGGGAGCGTACTGCCCCACCCCACAGgtatctGAGGAGATGCTTCAGCAGATCAGGACCACAGTTCTTCAGAAGACAGTAGACGGTATGAAAGAAGATGGAATTCCATATGTGGGTGTTCTGTACGCCGGGCTGATGTTAACTGATCAGGGGCCGAAGGTGCTGGAGTTTAACTGCCGATTCGGTGATCCGGAGTGTCAGgtgctgctgccgctgctgaaGAGTGATCTGTACGAGGTGCTGAAGAACACGCTGGAGTCTAAACTGGCCTCAGATCCTCCGCTGTGGTTGGACGACAGCGCTGCGGTCACTGTGGTGATGGCCAGTGAGGGATATCCTGGAGTCTATAAGAAGGGTGTGGAGATCACAGGTCTGTCTCAGCTCACAGAGATGGGACTCCAGGTGTTCCACGCCGGCACTGCCCTGAAAGAAGGAGGCGGAGTTGTGACCAGTGGTGGGCGTGTCCTAACTGTGACCGCAGTCCGGCCCACTTTAGAGAGCGCTTTACACAGCGCCAATCAGGGCGTGGCAGCGGTGGGCTTCCCCAACGCCGTGTACCGCCGAGACATCGGCCACCGAGCCATCGCCTACCTCACCCGCAccagAGGGCTGACGTATAAGGACAGTGGAGTGGATATAGCTGCAGGGAACAAGCTGGTGGATATAATCAAACCTCTGGCTAAAGCCACGTCTCGCTCAGGCTGCAGTGCTGATCTCGGAGGCTTCGCTGGGCTGTTTGACCTGAAAGCTGCTGGATTTGTTGATCCGATTCTCGTTTCTGGAACTGATGGAGTTGGTACTAAACTGAAGATTGCACAAGATTGCAACGTCCACAACACTCTCGGACAGGACCTGGTGGCCATGTGTGTGAATGATGTTCTggcccagggggcggagcctcTCTTCTTTCTGGACTATTTCTCCTGTGGGCACTTGGATGTGGGCGTGGCCTCATCTGTGATTGGTGGTATTGTGGAGGGGTGTCAGATGGCAGGATGTGCTTTGTTAGgtggagaaaCTGCAGAGATGCCGGGAGTGTATGGTGCTGGAGAGTATGACCTGGCCGGGTTCTGTGTCGGAGCTGTAGAGCGGGGGTCTCTGCTGCCCAGGCTGGGGGATATTCAAGAGGGAGACCTGCTGATTGGTGTAGCCTCCTCCGGGGTGCACAGTAACGGATTCAGCCTGGTGAGAAAAATCCTGGAGCGGGCGGGGCTCCAGTACAGCTCACCCGCCCCCTTCGGATCACCAGGACAAACCATGGGTGAGACGCTGCTCACACCAACCAAAATCTACAGCCGCCTTCTCCAGCCCATCCTGCGCAGTGGAACCGTTAAAGCCTATGCCCACATTACAGGGGGCGGCCTCCTGGAGAACATTCCCAGAGTTCTACCCAAAGAACTGGCTGTAGACCTGGATGCGACTCGCTGGAGAATTCCCTCGGTTTTCTCGTGGCTGCAGAAGGAAGGAGGACTCTCTGAGGAAGAGATGGCCCGGACGTTTAACTGTGGGCTGGGAGCGGTGCTGGTGGTGGGAAAGCAGGACGCTCAGAGGGTCCTCAGACAGCTGCAGGCCCAGGAGGAGGCGTGGATCGTTGGCTCGCTGATGCACAAACTGCCTGGTGGAGAAGCTGTGGTGGTCAGAAACCTGTTAGACAGTCTGAAGGCTGGTCCTAATCCCTCTCCTGATACCAGTGTTCTTCAGAACGGAGCTTCCCACGCAGATTCCAGCTCCCGCAAGAGGACCAAGGTGGCTGTGCTGATCTCTGGGACGGgcaCCAACCTGCAGGCCCTGATCGAGCAGACCAAGAAGCCGTCCAGCTCCGCTGAGATTGTGGTGGTGATCTCAAACCGGCCGGGGGTTCTGGGTCTGAAGAGAGCCTCCATGGCTGGAATTCAGACACGGGTGGTGGATCATAAGCTGTATGGGAGTCGTGCTGAGTTTGACAGCACTATAGACCGAGTGCTGGAGGAGTTCGGGGTGGAGGTGGTGTGTCTCGCCGGCTTCATGAGAATCCTCACCGGAAACTTCGTCAGAAAATGGAACGGGAAGCTGCTGAACATCCACCCGTCTCTGCTGCCGTCTTTTAAAGGAGTGAACGCACAGAAGCAGGCACTGCAGGCAGGAGCTCGAGTCTCCGGCTGCACCGTGCACTTCGTCGCTGAGGAGGTGGATGCTGGAGCTATCATAGCTCAGGAGGCAGTCCCTGTGCTGACCAATGACACGGAGGAAAGCCTATCGGAGCGCATCCGGGAGGCGGAGCATCGGGCGTTTCCCAGTGCGTTAGAACTGGTATCCAGTGGAGCGGTCAGACTGGGGGAGGACGGACGCCTCCTGTGGAGCCAGTCTGCGTAGAGTTCGGGCTGCGGCTAGCGTGATGAAACCTGGTTTAGATTAGAtccagtataaataaataaaattcctCTGCCTGAATTCTGAACTGAGCTTGTTTACATCACTTACTGAGAGCACAAGTGACCTTTCATTTCATTCCATTTCttttcatctcatctcatttcaTTTAATTCTATTATTTAGCTGTTAGAATGATGTAGAATGCTTATTTGTCTAGTTTAAGAGGAAGTGTAAATGTTACAAGTATTACTGTGGTTTTGTGTTATTTCTGAACATTCCATTTTTCTAATATAAACATACAACACCAGACTCCCATCTCTATGAATGatcaaaaacaccaaaatacTTAGAAACTGAAGGtcaaattgtcattttaaaaacattttttaaataattgataagAACCTTATGAATGGTTTGAAGCATTTAGgtcaataatgcacaaaaaacatgcattttctgctttttctggctactgcgcttgcgcagatctccacactgATCCAGGGCTTCTATACCAAGCACGCTGCCTCttaagctgattggctctttttgttaaaGGGTGGGtctttatctgtaaacagatGCCATGTTGAGCATTACAGAGAAGAACTCACATTTAGATTAGACACTACTTAAGTATTATTCAGACTAATAAAAGATGAATTGCATGACCAGTCCTGATGGTGAACTGCAATAGTGATGACTGTATCTGCTCTCTGCACGTGACTGTGAATACTGTAATTTCTGTTTCTCTACACTGATGTATTAAATCTTAATATTGCACAAAACCTG

Function

symbol description
gart Predicted to enable phosphoribosylamine-glycine ligase activity and phosphoribosylformylglycinamidine cyclo-ligase activity. Acts upstream of or within camera-type eye development; chordate embryonic development; and pigmentation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytosol. Is expressed in several structures, including alar plate midbrain region; digestive system; nervous system; pigment cell; and yolk syncytial layer. Orthologous to human GART (phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase).

NR:

description
trifunctional purine biosynthetic protein adenosine-3

GO:

id name namespace
GO:0043010 camera-type eye development biological_process
GO:0009113 purine nucleobase biosynthetic process biological_process
GO:0006189 'de novo' IMP biosynthetic process biological_process
GO:0043473 pigmentation biological_process
GO:0032259 methylation biological_process
GO:0009790 embryo development biological_process
GO:0005737 cytoplasm cellular_component
GO:0008168 methyltransferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004637 phosphoribosylamine-glycine ligase activity molecular_function
GO:0004641 phosphoribosylformylglycinamidine cyclo-ligase activity molecular_function
GO:0004644 phosphoribosylglycinamide formyltransferase activity molecular_function

KEGG:

id description
K11787 GART; phosphoribosylamine--glycine ligase / phosphoribosylglycinamide formyltransferase / phosphoribosylformylglycinamidine cyclo-ligase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674977.1 True 3994 mRNA 0.53 22 30672152 30711252

Neighbor

gene id symbol gene type direction distance location
LOC111193577 LOC108429857,LOC108258902 coding upstream 3408 30661999 ~ 30668744 (+)
LOC111193471 NA coding upstream 124791 30540261 ~ 30547361 (+)
ncam2 ncam2,LOC107721821,LOC107698913,LOC107751079 coding upstream 220551 29844100 ~ 30451601 (+)
LOC111193470 NA coding upstream 1013730 29656537 ~ 29658422 (+)
LOC103025432 NA coding upstream 1084030 29563196 ~ 29588122 (+)
adamts5 adamts5,LOC107751075,LOC107698897 coding downstream 550028 31261280 ~ 31300421 (+)
adamts1 adamts1,LOC107698918,LOC107751074 coding downstream 601488 31312740 ~ 31319149 (+)
cyyr1 cyyr1,LOC107751099 coding downstream 614442 31325694 ~ 31341351 (+)
app app,appa,LOC108258852,LOC107593741,LOC107698920 coding downstream 636049 31347301 ~ 31402273 (+)
G107267 NA non-coding upstream 143668 30493001 ~ 30528484 (+)
G107261 NA non-coding upstream 207221 30401626 ~ 30464931 (+)
G107128 NA non-coding upstream 216382 30448327 ~ 30455770 (+)
G107250 NA non-coding upstream 473208 30198295 ~ 30198944 (+)
G107243 NA non-coding upstream 504028 30167318 ~ 30168124 (+)
G107342 NA non-coding downstream 3928 30715180 ~ 30716606 (+)
G107389 NA non-coding downstream 21416 30732668 ~ 30732900 (+)
G107394 NA non-coding downstream 32425 30743677 ~ 30744047 (+)
G107396 NA non-coding downstream 34179 30745431 ~ 30745631 (+)
G107397 NA non-coding downstream 49418 30760670 ~ 30790277 (+)
G107117 NA other upstream 891225 29780326 ~ 29780927 (+)
LOC111193573 NA other upstream 1512472 29149065 ~ 29159680 (+)
LOC103027743 NA other upstream 1948126 28703067 ~ 28724026 (+)
G106673 NA other upstream 2605169 28066352 ~ 28066983 (+)
G106661 lancl1 other upstream 2650105 28014516 ~ 28022047 (+)

Expression


Co-expression Network