LOC111193578


Basic Information

Item Value
gene id LOC111193578
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 187147 ~ 188599 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674981.1
AGCCTCCACCCCCGTCTCCACAACGCCTACCAGCTCATCCAGACCTACCTCGGTGGTGCCAGTCTTGCGTACGTCCAGAATCTTGCAGCATCAAATATCAGCATGGACATGCCGACCTTCTTGTCACTGAACCCAGCTGTGATCAATgctctGACAGTCTCTGAAGTGAAGGCTTTGTTGGGAAATGCTAATTTAGCGGATCTGAAGAGGTATGAGAACAACACTGTGGTTCAGAACTGGGTTCGGCTGCAGCCGCAGGTCCAGCTGGACGCGCTCGCTATTGGCCTGACGGGCGGAACCGCCTCCAACAGCACCACCGCAGCACCCGCCGCCTCCAACGCTACGACTGCTAACGCTATCGCAGCTACAGCTACAACAGGTACACACACCTGGGCTAACTACAATAACTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674981.1 True 411 mRNA 0.55 3 187147 188599

Neighbor

gene id symbol gene type direction distance location
LOC107197101 NA coding upstream 4498 177680 ~ 182649 (+)
LOC103033028 NA coding upstream 17443 162996 ~ 169704 (+)
LOC103027555 NA coding upstream 61998 98126 ~ 125149 (+)
LOC111193489 NA coding upstream 169303 6084 ~ 17844 (+)
LOC103028503 NA coding downstream 27414 216013 ~ 223221 (+)
rexo5 NA coding downstream 88054 276653 ~ 293379 (+)
gtf3c1 NA coding downstream 123067 311666 ~ 341737 (+)
LOC107197104 NA coding downstream 266273 454872 ~ 459776 (+)
LOC103026069 NA coding downstream 353346 541945 ~ 548280 (+)
G99345 NA non-coding upstream 92965 92045 ~ 94182 (+)
G99344 NA non-coding upstream 98580 86699 ~ 88567 (+)
G99340 NA non-coding upstream 110125 66706 ~ 77022 (+)
G99356 NA non-coding downstream 9067 197666 ~ 200573 (+)
G99367 NA non-coding downstream 44328 232927 ~ 234373 (+)
G99368 NA non-coding downstream 46258 234857 ~ 235793 (+)
G99373 NA non-coding downstream 59341 247940 ~ 249482 (+)
G99352 thumpd1 non-coding downstream 75777 264376 ~ 265137 (+)
LOC103031902 NA other upstream 150083 20991 ~ 37064 (+)
G99561 NA other downstream 286061 474660 ~ 482219 (+)
LOC103036139 NA other downstream 298875 487474 ~ 496376 (+)
LOC111193579 NA other downstream 345430 534029 ~ 540471 (+)
LOC111193492 NA other downstream 401584 590183 ~ 593200 (+)
ubl5 ubl5 other downstream 919877 1108476 ~ 1110592 (+)

Expression


Co-expression Network