LOC103027651


Basic Information

Item Value
gene id LOC103027651
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 1248567 ~ 1253895 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674989.1
ttctctgCTCTCCTTTCTGCTGAGACAACGGCAATCACGCTGCTGAAACTACCGATCACAAACGTACTAGTGATCAGTCTCAGGAGGACTCAAGCACAAAACAGCAAATTCCAGTCTCTCAGTACAGACTTACTCTGAAGAAATGGACGGAGGAGATGAGCTGAGGATCGTCCTCCTGGGAAAGACTGGAGTCGGCAAAAGTTCTGTTGGGAACACAATTCTTGGAGAAAATGTGTTTGAAGCTGAATGTTCACCAGAAAGTGGAACACAGATTtgtaaaagagcagaaaaagaGATCAATGGTAGAAACATTGTTGTAATTGATACACCTGGAATATTTGATACTAACAGGCCAGAGGAAGAAGTTAAGTATGAGGTAATATCCAGTCTGGTAGAGTGTGCTCCCGGTCCTCACgtctttattttagtgttaaaggtagacagacacacagaggaaAATCAGAGAGCCCTGGAGAAACTGATGAAATATTTCACTGGTGATGCTGTTCATCATATGGTACTGCTGTTTACACACGGTGATAACCTTGAAAACATGAACATCCATGACTTCATAGAAAAGTCTGATGTTAAAGGGAAGAAGAGTGAAAAGCAATCTCTGAAAGGTCTGGTTGAGAGATTTGGGAATCGGGTTCATGTAGTTGATAATAAGCACTGGGATGAGAGCAGCAGAGTTTCAGCTGCATTAGCTTCTCTACAGGGGTTAAATCTTTCTGAACAGGCTCTCAGAGAAATTACTCAGAAAATGTCACAAACACCAGGTGATCAAACCCCCTGGTTTAATGTACTGTCAGATAACGGTGGAAATGCAGAGGCAGCAGGAAATGAGGAGCAAAGAGAATACCGAAACAATCGATATCAGCTCACCCAGCTGATGCAGAGTGTAAAAGTGATACTAACAAGATTTAATTCAGGAAACTACAGCAATGAAACCTTAGAGGCAATAGGAGAAGCCATTAATGTAGAAGTGGAAAATATCCTGTGGGAAATGGGAGTTGACAGAGCAGACATGGAGATCAAgagaagagcaagagagagagtgagaaacaaaATATGGAGACCTTTGGCTGGTGTAGCAGTAGGAATATTACTGGGAGCTTTACTGGGGGTGGGAGTTGGAGTAGCAGCTCCATTTGTGTTAGTAGCAGGTCTTATTAGAAAAGTATGGAACATGGCAACTCATCAGCATCCACAAGCTGGAGGTCCACGAGTCCAGAAAGCAGATATAGGAGCAGTAGCTGCTGCAGGAGCTGCTACAGGAATAGGAGCAGCAGTAGGAGCAGGAGCTGCTGCAGGAGCTGCTACAGGAATAGGAGCAGGACTAGGAGCTGGTGCTGCTGCAGGAGCTGCTACAGGAATAGGAGCAGGAGTAGGAGCTGGTGCTGCTGCAGGAATAGGAGCAGCAGTAGGAGCAGGAGCTGCTGCAGGAGCTGCTACAGGAATAGGAGCAGGACTAGGAGCTGGTGCTGCTGCAGGAGCTGCTACAGGAATAGGAGCAGCAGTAGGAGCAGGAGCTGCTGCAGGAGCTGCTACAGGAATAGGAGCAGGACTAGGAGCTGGTGCTGCTGCAGGAGCTGCTACAGGAATAGGAGCAGGAGTAGGAGCTGGTGCTGCTGCAGGAGCTGCTACAGGAATAGGAGCAGGAGTAGGAGCTGGTGCTGCTGCAGGAGCTGCTACAGGAATAGGAGCAGGAGTAGGAGCTGGTGCTGCTGCAGGAGCTGCTACGGGAATAGGAGCAGGACTAGGAGCTGGGATACTTCTATTATATGGAGCAGCAAAGGGTGGAGCTTCTGGCTACAAAGAATCAGAAACATCTGATAATCCGAAACAGGCAGCAGATAAAGCAGCTAAAGCTGTAACACAAAAAGCTGGAGATGTGCTGAAAGCATGCTGGAATGTGGGGAACACAGAAACTGGACCAGAGTATGAGACactaaataataacaaataa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674989.1 True 1969 mRNA 0.47 4 1248567 1253895

Neighbor

gene id symbol gene type direction distance location
LOC103027248 LOC103027248 coding upstream 4674 1240163 ~ 1243893 (+)
LOC103028492 NA coding upstream 12370 1233090 ~ 1236197 (+)
LOC111193496 NA coding upstream 19784 1218757 ~ 1228783 (+)
LOC103046652 NA coding upstream 76744 1151611 ~ 1171823 (+)
LOC103023562 NA coding upstream 280454 961275 ~ 968113 (+)
LOC103031973 dnm2,LOC105929264 coding downstream 49258 1303153 ~ 1326104 (+)
LOC103026147 NA coding downstream 101812 1355707 ~ 1366818 (+)
LOC111193583 NA coding downstream 259258 1513153 ~ 1518775 (+)
LOC111193585 NA coding downstream 276411 1530306 ~ 1534604 (+)
LOC111193586 NA coding downstream 282442 1536337 ~ 1539546 (+)
G99674 pin1,LOC107571794,LOC107727173,LOC107685032,LOC107662743 non-coding upstream 141071 1039796 ~ 1107496 (+)
G99677 NA non-coding upstream 144858 1051900 ~ 1103709 (+)
G99690 LOC108412243 non-coding upstream 162770 1081118 ~ 1085797 (+)
G99682 NA non-coding upstream 186386 1061716 ~ 1062181 (+)
G99671 NA non-coding upstream 220343 1027849 ~ 1028224 (+)
LOC103027978 NA non-coding downstream 3149 1257044 ~ 1289874 (+)
G99726 NA non-coding downstream 7847 1261742 ~ 1263514 (+)
G99734 NA non-coding downstream 79375 1333270 ~ 1333914 (+)
G99736 NA non-coding downstream 103197 1357092 ~ 1358954 (+)
G99899 NA non-coding downstream 123123 1377018 ~ 1419192 (+)
G99710 NA other upstream 64298 1181427 ~ 1184269 (+)
ubl5 ubl5 other upstream 137975 1108476 ~ 1110592 (+)
LOC111193492 NA other upstream 655367 590183 ~ 593200 (+)
LOC111193579 NA other upstream 708096 534029 ~ 540471 (+)
LOC103036139 NA other upstream 752191 487474 ~ 496376 (+)
LOC111193582 NA other downstream 42520 1296415 ~ 1298377 (+)
LOC111193593 NA other downstream 591596 1845491 ~ 1853019 (+)
LOC103047668 NA other downstream 631333 1885228 ~ 1889237 (+)
LOC103038569 NA other downstream 758134 2012029 ~ 2016263 (+)
LOC103031617 NA other downstream 779000 2032895 ~ 2038742 (+)

Expression


Co-expression Network