LOC103022670 (pgam1,LOC108436383,LOC108258456,LOC107729838,LOC107700858,LOC107598490)


Basic Information

Item Value
gene id LOC103022670
gene name pgam1,LOC108436383,LOC108258456,LOC107729838,LOC107700858,LOC107598490
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 2504485 ~ 2506380 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675014.1
tctctctctctttctctctctctctctgctgtagaGGCGGGGTATGAGTTTGATGTGTGCTACACGTCGGTACTGAAGCGTGCTATCCGGACTCTGTGGCTGGTTCTGGAGAGTATAGATCAGATGTGGCTTCCTGTGCACCGGACCTGGCGTCTGAACGAGCGGCACTACGGCGGACTAACTGGACTGAACAAGGCCGAGACTGCAGCCAAGCACGGAGAGGAGCAGGTGAAGATCTGGAGACGCTCGTACGACACGCCTCCTCCGCCCATGGAGTCCGACCACGACTTCTACTCCACCATCAGCCAGGACCGCCGGTACACCGACCTGACAGAGGACCAGCTGCCGGCGTGTGAGAGCCTGAAGGACACAATCGCTCGAGCCCTGCCGTTCTGGAACGAGGAGATAGTACCGCAGATCAAAGACGGGAAGAGGGTTCTGATCGCTGCCCACGGCAACAGTCTCCGTGGCATCGTGAAGCACCTGGAGGGAATGTCGGAGGAGGCCATCATGGAGCTGAACCTCCCCACCGGAATCCCCATCCTGTATGAACTGGACAAGAACCTGAAACCAGTGAAGCCCATGCAGTTCCTGGGGGACGAGGAGACCGTCCGCAAGGCCATGGAGGCCGTCGCTGCTCAGGGCAAGGccaagaaatagagagagagagaaagagagagagagagagagagagagagagagagagagaaagagaatagtTCACTTTATTTATCAGCTTCTAGATTTTACACTCTATCAGCACATGCCCACTATTGTGAACAATActgttataataattaaaaaacacagtctTATCATACACCCTATGCATACACCCTATGCAAGGCACATggtgatgcttattgctatcttactcccCATCAACTCTTAATGAGCttctggtgtatcttcacagcgtggatgtgcaggtcagtatcctttgCTGAGACTCACAAAAGCTCTGCGCTGTtgagatacgaacgcgccaaagtcagagctcacccgactcttaaagggaatgattactgacacactgattagagggagaacattctagaatagCATTTATTTGGTTGGAGAATATTCCATAACAGTGTTAATAAGAGaaagtcattttagagcatCATTCATTTGGAAGGAAAATAGATGTTTGTTGGGTTGGCGGGTGTTGGGTTGCCAATTGTTGTAATGCCATTTGTTGGGTTGCTGTATGTGTTGGGTTGGTATGTATTGGGGTGGCATGTTTTGGGTTGTCGTGTGTTGGGTTGGCGTG

Function

symbol description
pgam1 Enables phosphoglycerate mutase activity and protein kinase binding activity. Involved in glycolytic process; regulation of generation of precursor metabolites and energy; and respiratory burst. Located in cytosol.

NR:

description
PREDICTED: phosphoglycerate mutase 1

GO:

id name namespace
GO:0006096 glycolytic process biological_process
GO:0016311 dephosphorylation biological_process
GO:0004619 phosphoglycerate mutase activity molecular_function
GO:0004082 bisphosphoglycerate mutase activity molecular_function
GO:0004083 bisphosphoglycerate 2-phosphatase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675014.1 True 1273 mRNA 0.50 3 2504485 2506380

Neighbor

gene id symbol gene type direction distance location
LOC103025604 LOC108436360,LOC107598482,LOC107700849,LOC107747162 coding upstream 88664 2401554 ~ 2415821 (+)
khsrp khsrp coding upstream 114506 2369956 ~ 2389979 (+)
vps54 vps54,LOC107709616 coding upstream 176223 2308299 ~ 2328262 (+)
LOC103028349 NA coding upstream 274462 2222873 ~ 2230023 (+)
LOC103028654 rab1a,LOC108436370,LOC105021598,LOC107676578,LOC107666439,LOC106585917 coding upstream 291676 2205433 ~ 2212809 (+)
exosc1 exosc1,LOC107700859,LOC107598491 coding downstream 2156 2508536 ~ 2518926 (+)
pkd1 pkd1 coding downstream 268778 2775158 ~ 2916200 (+)
nthl1 nthl1 coding downstream 491179 2997559 ~ 3004262 (+)
slc9a3r2 slc9a3r2 coding downstream 502481 3008861 ~ 3031715 (+)
LOC111193603 NA coding downstream 636670 3143050 ~ 3149166 (+)
G100216 NA non-coding upstream 11267 2490799 ~ 2493218 (+)
G100205 NA non-coding upstream 68818 2432155 ~ 2435667 (+)
G100202 NA non-coding upstream 148449 2355327 ~ 2356036 (+)
G100199 NA non-coding upstream 158816 2345033 ~ 2345669 (+)
G100194 NA non-coding upstream 194382 2309716 ~ 2310103 (+)
G100221 NA non-coding downstream 19177 2525557 ~ 2537407 (+)
G100237 NA non-coding downstream 77141 2583521 ~ 2584324 (+)
G100240 NA non-coding downstream 121306 2627686 ~ 2703276 (+)
G100245 NA non-coding downstream 123432 2629812 ~ 2633083 (+)
G100249 NA non-coding downstream 149251 2655631 ~ 2673061 (+)
LOC111193601 NA other upstream 4054 2493761 ~ 2500431 (+)
avpi1 NA other upstream 41100 2451401 ~ 2463385 (+)
LOC103026535 slc25a23a,LOC103026535,LOC107594260,LOC107703801,LOC107747161,LOC108258471 other upstream 135921 2343619 ~ 2368564 (+)
c12h19orf53 LOC103027500 other upstream 168153 2333607 ~ 2336332 (+)
LOC103031088 NA other upstream 452627 2040094 ~ 2051858 (+)
LOC111193505 NA other downstream 104137 2610517 ~ 2625505 (+)
tekt4 LOC108436369 other downstream 135707 2642087 ~ 2650150 (+)
G100300 NA other downstream 538247 3044627 ~ 3046637 (+)
LOC103046164 NA other downstream 582273 3088653 ~ 3117263 (+)
G100314 NA other downstream 652276 3158656 ~ 3209330 (+)

Expression


Co-expression Network