LOC111193604


Basic Information

Item Value
gene id LOC111193604
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 3155218 ~ 3159534 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675018.1
ATGCCCCGAAGTGGCCGTTCTAAAGACTGCTggccaaaaagcacaaaattactgaatcttggaaagctgcgggagagtgGAGGTGAGCAATTCAAGAAAGGGTCCCAGAGGTTGAATTTGGTACTGTGTGGAACTGATGGAAAACAGAAAGCCTCCATATCAGATCTCATACTGGGCCAGAGGCAGCACAGTTCCAAGCACAGTCTGGAGCCCAGCTTAAGATGTGTAATGAGAGCTGGAGAAGTATCTGGACGCATAGTTACCCTGGTGGAGATGCCAGCTCTTTATAACCCTCCACTCCATACTGCAGAGAGAGAAGCTCTccactgtgtctctctctttgattCTGGAGTTTATGCTTTCCTCTTCATCGTTCCTGTTGGTCCCCTCACTGTTAAAGACcaagaagaaatgaagaagaTCCAGAAAACCTTCAGCTCCAGAGTGAAAGAATATTTATTGGTTGTTTTTACCACACAAGATATGCAACAGCCTGTGAGGGATTTTATTGAAGGTGACACAGAAGTAAGGAACTTTCTTGCTTTGTGTGATGATCGATATACAATAGCGGAAACAAAGATGGGAAAACCCTCCAAGCAGGCAGGTGAAAAGCTGGTGGATGAAATTATAAAGAGGATCGATGCACCGCACTATTCTCTTCACATGTATGTGACAGCTCAGGAAGAAAGAGTCAGACGTGAAATGGAGGAGGAGTATAAAGCAGAGCTGAACAAACAAGAGAATGAAATCCAGGATTTAAAGATGAAGCTCCAGTCAAAGGTTGAAGCTGAAGCACAGGATTCCAGCTGCCTAAGAATTGTGTTGATTGGAAAGACTGGAAATGGAAAGAGTGCAACAGGAAACACCATCCTGGGAAAAAATGAATTTGCAACTGAAGCCAGTATTGATTCTGTGACAAAAGTCTGCCAGAAAGGAGTTGGTGAAGTACTGGGAAGGTCAGTTGCTGTAATTGACACTCCGGGGCTCTTTGATGCCACACTGTCAATGGAACAAATCCAGCAAGAAATTGTGAAGTGCATCTCAATGTCAGCACCTGGACCCCACGCTTTCATTATAGTACTGAGTGTGGGAAGATTCAGCAAAGAAGAAGTAGACACTTTAGATATGATTAAAACTATCTTTGGTCCAAAGGCTGCAATGTTCAGTATAGTGCTGTTCACTAGAGGAGATGACCTGGAAGATCAGACAATAAACAAGTACGTAGAAAAAAGTACCAATGAGCCGGTCAGGAAGATGCTCAGAGACTGTGGAGACAGATTCATAGCATTtaataacaaagaaaaacaagaccGCACCCAGGTTTTTGAACTTCTGACTCAAATTGAAACAGTGATAAACGCAAACACATCGAGTCAGTATTTTACAAACAGCATGTTCCAAGAAGCAGAAATGTCCATCAAAAAGAAAATTGAGGAAattctgagagagaaagagaaagagattaaAGCTGAAAAGGTAAAACTTGAAACCAAATACAACCAGGAAATAGAAGAGATTAAGAAAAGACTAGAGGAAGAAAAACAGAAGgctaatgaaaaaaaactgcaaatagAGAATCATTTCAAAGAAAAAATTGAAGCTCTCAAAAAAGagtttaaagaaaaagaagaaatggaCAAGAAGAAACAGGAGATGGAAGACAAGGGCAAGGCAGAAGAAGCAAAAATGCAAATGGAAAGATGGCAAAACAGGATTAGTGAGCTAGAAATAGAGAATAAAAAGCAGAGAGATGAATTTGAAAAGCAGCTAAGTGATAAAGAAGCAGAAGAtaaaaggagagaagagagatacaAACAAGATGAAAAACTTTTGCAAAATCAGCAAAAGCAAGCCATGGAAGAACTGAGAAAAAGACAAGATGAAGACCTAAAAAGGAGAGATTTGGAGGAAGACAGAATGAGACAAAAAGAAGAGGATGAGAGACGTAATTGGGAGAGGAGAATAAAAGAGGCTGAACATGAAAGGACAGAGATACAAGAGGGCCTTAAGCGTAAACTGAGGGAAtgggaagaagagaagaaaaggcaGATAAAGGAACTACAGGAAGAGGATCGGCTAAGAAAGCAGAAGCATGCTGAAGAGCTACGATCTAAACAagaagaacagaacagaatgagagagaaatttGAAAGAGACATGGAAGAAGAAAGACttcagagagaagaagagaaacgAAAGTGGAgggaagaaagtgagagaaaagacAGTGAGTATGAGAAAAAGAAGCGTACAATGGAAGCACAGATGAAAGAACAGTATGAGCAGATGGAGAAAAGAAGGATGGAAGAGcaggagagaagaaaagaagaggatGAAGAAAGAAGAGCTGACGAAAGAAAACGACTGCAGGAAAGAGAAGCGGACATCAAGAGACAATGGAAGGAGGACATTaagaagagagaggcagaaaGCTTATAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675018.1 True 2439 mRNA 0.41 5 3155218 3159534

Neighbor

gene id symbol gene type direction distance location
LOC111193603 NA coding upstream 6052 3143050 ~ 3149166 (+)
slc9a3r2 slc9a3r2 coding upstream 123503 3008861 ~ 3031715 (+)
nthl1 nthl1 coding upstream 150956 2997559 ~ 3004262 (+)
pkd1 pkd1 coding upstream 239018 2775158 ~ 2916200 (+)
exosc1 exosc1,LOC107700859,LOC107598491 coding upstream 636292 2508536 ~ 2518926 (+)
LOC111193506 NA coding downstream 5112 3164646 ~ 3170094 (+)
LOC111193605 NA coding downstream 22648 3182182 ~ 3183378 (+)
LOC111193507 NA coding downstream 23906 3183440 ~ 3184312 (+)
LOC111193606 NA coding downstream 30548 3190082 ~ 3200505 (+)
LOC107197534 NA coding downstream 43313 3202847 ~ 3209594 (+)
G100305 NA non-coding upstream 29638 3063953 ~ 3125580 (+)
G100288 tsc2 non-coding upstream 157802 2991418 ~ 2997416 (+)
G100282 NA non-coding upstream 181714 2918736 ~ 2973504 (+)
G100317 NA non-coding downstream 22657 3182191 ~ 3200431 (+)
G100377 nup133,LOC106564728 non-coding downstream 196044 3355578 ~ 3357876 (+)
G100387 NA non-coding downstream 231483 3391017 ~ 3394325 (+)
G100365 NA non-coding downstream 265155 3424689 ~ 3426907 (+)
G100363 btbd3,btbd3a,LOC107583195,LOC107684321,LOC107675618,LOC107594463,LOC107747408 non-coding downstream 276505 3436039 ~ 3463191 (+)
LOC103046164 NA other upstream 37955 3088653 ~ 3117263 (+)
G100300 NA other upstream 108581 3044627 ~ 3046637 (+)
tekt4 LOC108436369 other upstream 505068 2642087 ~ 2650150 (+)
LOC111193505 NA other upstream 529713 2610517 ~ 2625505 (+)
LOC111193601 NA other upstream 654787 2493761 ~ 2500431 (+)
LOC103023443 NA other downstream 67205 3226739 ~ 3229366 (+)
LOC103022119 NA other downstream 852461 4011995 ~ 4060749 (+)
G100820 akt3b,LOC108438606,LOC108259077,LOC107594289,LOC107729704,LOC107703832,LOC101071975 other downstream 1090549 4250083 ~ 4267826 (+)
atg4d atg4d other downstream 1469589 4629123 ~ 4645356 (+)
G100975 NA other downstream 1927226 5086760 ~ 5091748 (+)

Expression


Co-expression Network