pld6 (pld6,LOC107583251)


Basic Information

Item Value
gene id pld6
gene name pld6,LOC107583251
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 7285492 ~ 7289120 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675028.1
ATGCCAGCTGTTATTTCAGCAGGGTTAGTGTCTCCTACCCAGAAAAATAAAGCTGGCATCCACCTTTCCTTCCTCCCTGAGGCCCAGCAGTCATTTGGATGTTGGCCATATGATGACTTACTGTCCGGTAGAATTCTGTCCAGTCCCGGGAATGCATCATCATTCTTTAGTGCTTGTTTTTTGCTGTGTCAGATGTCTCTGGGGCAGCTGCTGAAAATGCTGGGGCTCGGAGCAGTGGCTTTGACATTAGGAGTGGAGTGGGTAAACTGGCTGGCAAGGCGTCTGAGGCCCTGGAGGGGCCCCCAGGGGCCCTTAAAAGAAGTTCTGTTCTTTCCTTCGCCCATAACGTGCACGGAGCACCTGTACAGCCCAGACCGGACTTCACCATGCCTCTGTCCCCTCCCCCATGGGATTGACACCTCCTTCTCGCGGCTGCTGGAGCACCTCCTCTCGGCATGTGTGTCtctggagctgtgtgtgttctCCTTCTCTCACCTGGAGCTGAGCAGGGCTGTGCTGCTGTTACACGGCCGCGGGTTGGCGGTTAGAGTGCTCACAGACCGAGACTACATGTCCATCACCGGCTCTCAGATCGGTGCCCTCCGCAGGGCAGGGATCTGTGTGAGGCATGAGCTGAGTAAAGTCGTGCACATGCACCATAAGTTTGCGCTGGTAGATGGACGTAAGCTGATCACAGGCTCCCTGAACTGGACGGCCACCGCTGTCCAGAGCAACAAGGAGAACGTGATCGTGACGGAGGAGCCGGAACTGGTGCAACCCTATCGGGACGAGTTCTCCAGGCTGTGGGAGGCCAACGAcccagccaatcacaatcaCCATTTACCCAGCTCCACTGCAACAAAGGGGTTAGTGACTCACGGCAATGATGTGTAGATGGCTTTGGATTTAAGGTGAAttatcttttcttattttattagattttgttAAAGAGTTTGgaagtgttttacagtgtgatAATAATCACTT

Function

symbol description
pld6 Predicted to enable cardiolipin hydrolase activity and protein homodimerization activity. Predicted to be involved in several processes, including gamete generation; mitochondrial fusion; and piRNA metabolic process. Predicted to act upstream of or within cell differentiation; lipid catabolic process; and spermatogenesis. Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Predicted to be active in mitochondrial outer membrane. Orthologous to human PLD6 (phospholipase D family member 6).

NR:

description
PREDICTED: mitochondrial cardiolipin hydrolase

GO:

id name namespace
GO:0030719 P granule organization biological_process
GO:0043046 DNA methylation involved in gamete generation biological_process
GO:0007286 spermatid development biological_process
GO:0034587 piRNA metabolic process biological_process
GO:0008053 mitochondrial fusion biological_process
GO:0016042 lipid catabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0004519 endonuclease activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0035755 cardiolipin hydrolase activity molecular_function

KEGG:

id description
K16862 PLD6; mitochondrial cardiolipin hydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675028.1 True 987 mRNA 0.53 4 7285492 7289120

Neighbor

gene id symbol gene type direction distance location
LOC103040632 LOC108435946,LOC107747441,LOC107676094 coding upstream 3653 7272558 ~ 7281839 (+)
spp2 NA coding upstream 88495 7190324 ~ 7196997 (+)
alg11 alg11,LOC107556718 coding upstream 101599 7176528 ~ 7183893 (+)
LOC103037816 cunh3orf70,LOC108435969,LOC107556711,LOC105912663,LOC102778299 coding upstream 551510 6692275 ~ 6733982 (+)
igf2bp2 igf2bp2,LOC108435967,LOC105911772,LOC107749880,LOC107704342 coding upstream 652126 6553811 ~ 6633366 (+)
LOC103040938 rab3da,LOC103040938,LOC108435977,LOC108258507,LOC107757002,LOC107747429,LOC107675349,LOC107569532 coding downstream 5165 7294285 ~ 7318919 (+)
LOC103041253 NA coding downstream 49047 7338167 ~ 7345064 (+)
tpt1 tpt1,LOC107691594,LOC107567988,LOC107598740,LOC107654875 coding downstream 146510 7435630 ~ 7443495 (+)
pibf1 pibf1 coding downstream 180223 7469343 ~ 7538634 (+)
LOC103044305 NA coding downstream 253220 7542340 ~ 7560927 (+)
G101656 NA non-coding upstream 15349 7269806 ~ 7270143 (+)
G101636 NA non-coding upstream 110603 7174665 ~ 7174889 (+)
G101626 NA non-coding upstream 165183 7094547 ~ 7120309 (+)
G101620 NA non-coding upstream 165511 7118866 ~ 7119981 (+)
G101609 NA non-coding upstream 191422 6999086 ~ 7094070 (+)
G101674 NA non-coding downstream 80155 7369275 ~ 7369582 (+)
G101676 NA non-coding downstream 81951 7371071 ~ 7371397 (+)
G101679 LOC107655627,LOC107559781,LOC108256914,LOC108437766,LOC105901645 non-coding downstream 89142 7378262 ~ 7382475 (+)
G101767 NA non-coding downstream 160793 7449913 ~ 7452365 (+)
G101776 NA non-coding downstream 207350 7496470 ~ 7498497 (+)
G101622 zc3h13 other upstream 139152 7144802 ~ 7146340 (+)
LOC103032856 march9,LOC108435943 other upstream 288046 6955319 ~ 6997446 (+)
G101452 NA other upstream 877681 6282025 ~ 6407811 (+)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 982790 6300114 ~ 6302702 (+)
G100975 NA other upstream 2193744 5086760 ~ 5091748 (+)
LOC103042156 NA other downstream 95637 7384757 ~ 7393225 (+)
G102015 NA other downstream 1425719 8714839 ~ 8719235 (+)
LOC103025691 NA other downstream 1508625 8797745 ~ 8836081 (+)
trnar-ucu_1 NA other downstream 1544720 8833840 ~ 8833931 (+)
G102411 LOC107747660 other downstream 3236557 10525677 ~ 10526160 (+)

Expression


Co-expression Network