cfap58


Basic Information

Item Value
gene id cfap58
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 13225301 ~ 13429937 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675033.1
AtggcggtggtggtgATGAAGGAGGAAGAGGTGAAGCAGGTGAAGCAGGAGAACGCTAATCTCAGTAAGATGAGGGAGGCCGCCCAGAGGAAACTGCGTCTGGTGGAAAACGAGAAACTGGAGGTGGAGCAGCAGACTTTCACGCTGAAGAACCAGATCATTGGCCTGGAAAGAGAAATGGAGATTGCGAAAAAACAGACGGAGAGCTACAAGAAGAAGATGGACGAACTGGTCAGGGAGAAAGACACTCTTCACAAGAACATGATCAAGGCAGCGAACGCCACCGAGAAGCAGCAGGATTTGGTGCGGCTGCAGAAGCAGACGAAGAAGACCCTGGACCAGGAGATTCTGGCCTACAAGGACGAGGCACAGAAGCAGCGCAAAATAATCTTTCAGCTGGAGCAGGAGCGAGACAAACACATCAACGACGCCAGCGACCTCACACAGAAGGTGTTGTTACTCATGGAGGAGATCAAAGCGCAGCAGATGCAGATATTTGAGTACAGGAAGAAGATTGCTGAAGCAGAGACCAAGCTGAACCAGCAGCAGAACCTCTATGAAGCGGTCCGGACCGACCGCAACGTCTACAGCAAGAACCTCATTGCAGCTCAGgACGAGATCACAGAGATGAAACGCAAGCTGAAGCTCATGACCCACCAGATTGATCAGCTCAAAGAAGAGATCACTGGCAAAGAGGCCACCCTGGTCAAAGAGCACCTCGAGTTCCAGCGggtggagaaagagaaggaggctcTAAAGGCCGAGCTTCAGAAGATGAGGCAGCAGGCTGAGGACACCAAGCGCTTCATTGACAATCAGGCGATGGAGGAGCGCAAGCTGCTGAGGAACATAGCGGACGCTGACGCTGAGAGAATGCGGCAGAAGAAAGAATTGGAAAAGGTGGTCAGCGAGCGGGACATCCTGGGGACGCATCTGGTGCGGCGGAATGACGAGCTGGCGCTGCTCTACGAGAAGATCAAGATTCAGCAGTCCATCCTGAACAAAGGCGAGCTCCAGTACAACCAGAGACTGGAGGACATCCGGCTGCTCAAGATGGAAATCAAGAATCTACAGAGGAAGAAGCGCAACCTGAACAAAAATGTGTCCAACATGGAGGACCTCAGACGGGAGTTACACCACATTCAGAGGGAGCTGCtcaaagagagagcgagatgtGGAGCCATGGAGCAGGAGCTGGAAAATCCAAAGAATGTTCATCGCTGGAGACAGCTTGAGGCGAGTGACCCCAGCACCTTCGAGTTGATCCAGAAGATTCACTCTCTTCAGCGGAGGTTGATAACCAAAAGCAAGGAGGTGGTGGAGAAGGAGCTTCTGCTGCAGgaaAAGGAGAAGCTGTACGTGGAGCTCAAGCACATGCTAGCTCGACGGCCTGGTCCAGAAGCAGCAGAACAGCTTAGCATCTACCAGCAGAAACTGAGGGAAAAGACCAAACTACTGAAGGCTCTAACAGCTGAGCTGAACATGTACAGATCTCAGGTTCAGGAACACAGGAACGACACCGAGAGGCTGGCCCAGGAGCTGCAGGACACCAAGAAAAAATACCTCTCCCTGAAGAAAAGAGTGCAGCAAAGCAGTGAGAAGGAGAGGAGTCTGGCCCAGGCAGGACAGCCCATCATCCAGCCTCAGCTTACTGACGGACCCCGCTTCACTGGAGGAGGCTTCAGCTTAAAACATCCCACCAGGATCACCGCCTAGAACACCCACCTccatctctatttctctttctctcccctctttttttaaattttgatcTGCTCATTCAACCTGCACAAATAAAGCCATCTCTAAGCACCCTGTCATaataaaactgtgtttctgtgaAATGAAGTcaataaattcattttttgttCATAA

Function

NR:

description
cilia- and flagella-associated protein 58

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675033.1 True 1875 mRNA 0.51 13 13225301 13429937

Neighbor

gene id symbol gene type direction distance location
stn1 obfc1 coding upstream 378656 12837159 ~ 12846645 (+)
LOC103028459 LOC108428195,LOC108258943,LOC107566531,LOC107710590 coding upstream 392157 12818186 ~ 12833144 (+)
LOC103028151 fstl1,LOC103028151,LOC108428196,LOC108258944,LOC106575075,LOC105019681 coding upstream 409640 12785758 ~ 12815661 (+)
LOC103027506 gja8,LOC108258942,LOC107603011,LOC107566539,LOC107746070 coding upstream 458131 12762266 ~ 12767170 (+)
bcl9 bcl9,LOC107676875,LOC107746055,LOC107746285 coding upstream 492104 12568579 ~ 12733197 (+)
LOC103043054 NA coding downstream 150190 13580127 ~ 13590984 (+)
LOC103024001 LOC108439370,LOC108258974,LOC107758869,LOC107590749 coding downstream 200680 13630617 ~ 13665746 (+)
LOC103023667 LOC108439371 coding downstream 243361 13673298 ~ 13676357 (+)
LOC103023349 LOC108439383,LOC108258976 coding downstream 246507 13676444 ~ 13680221 (+)
LOC103047056 npy2rl,LOC108439369,LOC107758849,LOC107590775,LOC107714138,LOC107665946,LOC107692719 coding downstream 343493 13773430 ~ 13805229 (+)
G103163 NA non-coding upstream 10655 13212397 ~ 13214646 (+)
G103133 neurl1,neurl1aa,LOC107676877 non-coding upstream 179418 13040640 ~ 13045883 (+)
G103130 NA non-coding upstream 190382 13034231 ~ 13034919 (+)
G103102 NA non-coding upstream 206133 13018848 ~ 13019168 (+)
G103086 NA non-coding upstream 407812 12817258 ~ 12817489 (+)
G103212 NA non-coding downstream 18275 13448212 ~ 13448448 (+)
G103218 NA non-coding downstream 55583 13485520 ~ 13486984 (+)
G103221 NA non-coding downstream 102795 13532732 ~ 13533308 (+)
G103255 NA non-coding downstream 166314 13596251 ~ 13596572 (+)
LOC111193537 NA non-coding downstream 173659 13603596 ~ 13605378 (+)
sh3pxd2a sh3pxd2a other upstream 192795 12851001 ~ 13032506 (+)
cryzl1 cryzl1 other upstream 702998 12483622 ~ 12522303 (+)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 1200537 12000639 ~ 12024764 (+)
map2k7 map2k7,LOC107676852,LOC107712243 other upstream 1930486 11274746 ~ 11294815 (+)
LOC111193528 NA other upstream 2355145 10868577 ~ 10870156 (+)
G103376 zgc:77880,LOC108439367,LOC107692630,LOC107723165,LOC103363053,LOC107758853,LOC105904859,LOC107590776 other downstream 499128 13929065 ~ 13935667 (+)
G103490 LOC106510829 other downstream 830688 14260625 ~ 14261539 (+)
G103551 NA other downstream 1188698 14618635 ~ 14619082 (+)
G103561 NA other downstream 1261106 14691043 ~ 14692199 (+)
LOC103032764 LOC108443686,LOC108258285,LOC107746061,LOC107684317,LOC107566138,LOC105891017,LOC107690754,LOC107086972 other downstream 1569518 14999455 ~ 15297939 (+)

Expression


Co-expression Network