LOC103037127


Basic Information

Item Value
gene id LOC103037127
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 16576843 ~ 16601035 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675042.1
CTCCAGGTCGCGCGCTCAGACACTGCACAATGTCCTCGCGCACCTGCTCATTTTAACGGCTGACTGAAGCTCGTTTCTCTTCCTCAGATATCGGTGATGTAATGGCAATGAGCTGAGGATCATAGTGTGAGTGTGGGgtgcctgtgtgtgtatttgtgcgtgtgagtgtgtgagtgtatgagcCTTCTCCACAGAGAGACGGAAGCAAACAAGGAACAAAGCAAAAAACTCAGAAGCTCCTCAGGAGCCTGAAGCTGCGTTTCAGCCTGCTGGTTGACTGATAAAACCATGGATTCCAGCCAAGGAGAAATGGAAGGAAATACAGAGGAACTTACAGGGAGAAAGAAGTCCCGGTTCAAGGTTCTGAAGACGCGACTGTTTGGCCGTCTAAAGAAGAAGGAGACCGAAGGCCAGATGAAGCAGAGCAAGTCCACTAGTGATGTTACTGCACAGGCTGGCAAGAGAGGTGAAGAAGAGTCAGAGGATGAGTGTAGGTATCCACAAGGGACATTAAGTTCCAGAGCACTGTCCCATGACAGCATTTTCTTGGCCGATCAGCCTCAATCCAGTACAGAGCCAACAAGGGTTCTCTCACAGGAAAATGTCCACAGCAAAATTAAAGCCCTGCAGGTGAAGCTTCAGCAACAGAACATGCGACTGGGTCCTCCTCCCTTACTGATCCCCGGAAAGCGCATTGAAGACCCTGGAACAACGTCTGAAGATGACGGTCTACCTTGCAGCCCTCCTGAAATGTCCTTCCAAGAGCATCCTGAGGCAAAAAAGCATCTCAGTTTAATAAGCTTATCAGGAACTGGCAGTGAAGAGGAAGACCAGgGTGGTTCCTCACAGCCCCCATCCAGACCTCTCTCTCCAGTCTCACGATTCACGAGTCCTCAGGCAGGGACCTCATCACCTACAGATCTTCTCTCACCCACTGCTGGAACAGATTTCTGTAGCCCTGCTCATCCAGTCACCTGCCTGGACAACTCGGCTGCTCGTCACCGCATGTCTGTGAAGCCCAGGAATCAACGTGCCAGCACCAAGGGGAGGAAACAGTCACTGGATGTGTACCGTAGTCGATCTAACAGCATGAACAATTTGGACCAGCCTCTACCAGAAAGGGAAGAAGCACCAGAAGATGTGACCTCTGCAGAGTTTGTTCACCACCAGTCCAGCTACAACTCCTCTCAAGAAATGAATCTAGAACGGGAACCATCCTCTCCCGTTTCTGTCTCAGCTCCTGTTATTGTAACACTACAAGACCAACAAGAAATCATGTTATTGGATGTGGGTCCACTAAACAAAGGTGATGAGGTGCCAAAGTCTGGTGAGCCATTGGAAACTGACCATTTAGAAGGAGATGCAAAGGAACAAACTGCTAATATTCAAGCTGACAGTAACAAAGAGGCCAAAAATCAGCCTAATCCAGTTCTAAACATAGTGACTGAGTGCAGTGAGAGTACAACACATAGGTCTTATACCATGGATCAAATGGAGGTGCTGAAAAAGGACGCAGAACCCTTGGCTAGATCCCATCCAGTTCCTGCACCACGATCCAAAAAGCCCACTGTGGATAACAGACATAACACCCCCCTGAAAACATCCAGTCCGAGACCTACAGAGGTTGAAAAGGAGACAGTTATTCCTGAGATAAGCTGCAGGAACACACCACTTTCCAAAGGCCTGGACGTATCTTCAAGCGAAAGCATTAGTAAACCACTAAGACCCAACTCTTTTCGGTTTTCCATTGCATCTGCGAAATATCGTTCCAAGAGACACAGAAGAAGtcaataa

Function

GO:

id name namespace
GO:0003884 D-amino-acid oxidase activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00472 D-Arginine and D-ornithine metabolism
ko00311 Penicillin and cephalosporin biosynthesis

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675042.1 True 1794 mRNA 0.49 9 16576843 16601035

Neighbor

gene id symbol gene type direction distance location
LOC103038100 NA coding upstream 128354 16442958 ~ 16448489 (+)
pdcd11 pdcd11,LOC104950700 coding upstream 158431 16388056 ~ 16418412 (+)
taf5 taf5,LOC102783881 coding upstream 193345 16372790 ~ 16383498 (+)
LOC103039552 NA coding upstream 251728 16321122 ~ 16325115 (+)
LOC103039857 caly,LOC103039857,LOC108434710,LOC108258305,LOC105891014,LOC107583165,LOC107684294 coding upstream 322605 16236028 ~ 16254238 (+)
LOC103036820 NA coding downstream 10566 16611601 ~ 16625584 (+)
LOC111188171 zc3h12c coding downstream 27654 16628689 ~ 16662345 (+)
LOC103036216 NA coding downstream 189713 16790748 ~ 16798890 (+)
LOC103035380 NA coding downstream 202873 16803908 ~ 16816495 (+)
vangl1 vangl1,LOC107552384,LOC107748077,LOC107588836 coding downstream 308613 16909648 ~ 17020202 (+)
G104001 NA non-coding upstream 30833 16544256 ~ 16546010 (+)
LOC111193544 NA non-coding upstream 139211 16433809 ~ 16437632 (+)
G103972 NA non-coding upstream 317845 16258785 ~ 16258998 (+)
G103945 NA non-coding upstream 490999 16085643 ~ 16085844 (+)
G103943 NA non-coding upstream 496683 16079730 ~ 16080160 (+)
G104082 LOC107662997,LOC107757412,LOC108434698,LOC107707084 non-coding downstream 81705 16682740 ~ 16687373 (+)
G104144 NA non-coding downstream 259953 16860988 ~ 16861202 (+)
G104151 NA non-coding downstream 326189 16927224 ~ 16934483 (+)
G104162 NA non-coding downstream 445737 17046772 ~ 17047740 (+)
G104177 NA non-coding downstream 581261 17182296 ~ 17182538 (+)
LOC103037450 NA other upstream 2410 16555694 ~ 16574433 (+)
col17a1 col17a1,LOC108434660,LOC107684270,LOC107583183 other upstream 69056 16463938 ~ 16507787 (+)
G104000 NA other upstream 118634 16451175 ~ 16458209 (+)
LOC103032764 LOC108443686,LOC108258285,LOC107746061,LOC107684317,LOC107566138,LOC105891017,LOC107690754,LOC107086972 other upstream 1278904 14999455 ~ 15297939 (+)
G103561 NA other upstream 1884644 14691043 ~ 14692199 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other downstream 287351 16888386 ~ 16894592 (+)
LOC103031769 prps2 other downstream 518812 17119847 ~ 17138973 (+)
LOC111193547 NA other downstream 805560 17406595 ~ 17419138 (+)
G104656 pcdh8 other downstream 2318025 18919060 ~ 18923203 (+)
nfkbiz nfkbiz other downstream 3133191 19734226 ~ 19744924 (+)

Expression


Co-expression Network